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Sulfur ligated oxoiron(IV) centre in fenton-like reaction: Theoretical postulation and experimental verification. CATAL COMMUN 2022. [DOI: 10.1016/j.catcom.2022.106536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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2
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Saputri WD, Pranowo HD, Schuler MJ, Hofer TS. Cu 2+ in liquid ammonia-The impact of solvent flexibility and electron correlation in ab initio quantum mechanical charge field molecular dynamics. J Comput Chem 2020; 41:2168-2176. [PMID: 32735755 DOI: 10.1002/jcc.26379] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 06/13/2020] [Indexed: 11/06/2022]
Abstract
The impact of solvent flexibility and electron correlation on the simulation results of Cu2+ in liquid ammonia has been investigated via an ab initio quantum mechanical charge field molecular dynamics (QMCF MD) simulation approach. To achieve this, three different simulation systems were considered in this study, namely Cu2+ in rigid and flexible ammonia at Hartree-Fock (HF) level of theory, as well as resolution of identity second order Møller-Plesset (MP2) perturbation theory in the rigid body case. In all cases, a stable octahedral [Cu(NH3 )6 ]2+ complex subject to dynamic Jahn-Teller distortions without the occurrence of ligand exchange was observed. The Cu2+ - NH3 distance in the first shell agrees well with the experimental and other theoretical data. In all three cases, the structural data shows that the rigid-body ammonia model in conjunction with the HF level of theory provides accurate data for the first solvation shell, while at the same time, the computational demand and thus the achievable simulation time are much more beneficial. The vibrational analysis of the Cu2+ - NH3 interaction yields similar force constants in the three investigated systems indicating that there is no distinct difference on the dynamical properties of the first solvation shell. In addition to the QMCF MD simulations, a number of natural bond orbital (NBO) analyses were carried out, confirming the strong electrostatic character of the Cu2+ - NH3 interaction.
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Affiliation(s)
- Wahyu Dita Saputri
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Yogyakarta, Indonesia.,Austrian-Indonesian Centre for Computational Chemistry, Universitas Gadjah Mada, Yogyakarta, Indonesia
| | - Harno Dwi Pranowo
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Yogyakarta, Indonesia.,Austrian-Indonesian Centre for Computational Chemistry, Universitas Gadjah Mada, Yogyakarta, Indonesia
| | - Manuel J Schuler
- Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innsbruck, Austria
| | - Thomas S Hofer
- Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innsbruck, Austria
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3
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Buchanan CA, Ko E, Cira S, Balasubramanian M, Goldsmith BR, Singh N. Structures and Free Energies of Cerium Ions in Acidic Electrolytes. Inorg Chem 2020; 59:12552-12563. [PMID: 32845625 DOI: 10.1021/acs.inorgchem.0c01645] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The Ce3+/Ce4+ redox potential changes with the electrolyte, which could be due to unequal anion complexation free energies between Ce3+ and Ce4+ or a change in the solvent electrostatic screening. Ce complexation with anions and solvent screening also affect the solubility of Ce and charge transfer kinetics for electrochemical reactions involving waste remediation and energy storage. We report the structures and free energies of cerium complexes in seven acidic electrolytes based on Extended X-ray Absorption Fine Structure, UV-vis, and Density Functional Theory calculations. Ce3+ coordinates with nine water molecules as [Ce(H2O)9]3+ in all studied electrolytes. However, Ce4+ complexes with anions in all electrolytes except HClO4. Thus, our results suggest that Ce4+-anion complexation leads to the large shifts in standard redox potential. Long range screening effects are smaller than the anion complexation energies but could be responsible for changes in the Ce solubility with acid.
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Affiliation(s)
- Cailin A Buchanan
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States.,Catalysis Science and Technology Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Eunbyeol Ko
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States.,Catalysis Science and Technology Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Spencer Cira
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Mahalingam Balasubramanian
- Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - Bryan R Goldsmith
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States.,Catalysis Science and Technology Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Nirala Singh
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States.,Catalysis Science and Technology Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
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4
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Acher E, Masella M, Vallet V, Réal F. Properties of the tetravalent actinide series in aqueous phase from a microscopic simulation self-consistent engine. Phys Chem Chem Phys 2020; 22:2343-2350. [PMID: 31932817 DOI: 10.1039/c9cp04912f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the context of nuclear fuel recycling and environmental issues, the understanding of the properties of radio-elements with various approaches remains a challenge regarding their dangerousness. Moreover, experimentally, some issues are also of importance; first, it is imperative to work at sufficiently high concentrations to reach the sensitivities of the analytical tools, however this condition often leads to precipitation for some of them; second, stabilizing specific oxidation states of some actinides remains a challenge, thus making it difficult to extract general trends across the actinide series. Complementary to experiments, modeling can be used to unbiasedly probe the actinide's properties in an aquatic environment and offers a predictive tool. We report the first molecular dynamics simulations based on homogeneously built force fields for the whole series of the tetravalent actinides in aqueous phase from ThIV to BkIV and including PuIV. The force fields used to model the interactions among the constituents include polarization and charge donation microscopic effects. They are built from a self-consistent iterative ab initio based engine that can be included in future developments as an element of a potential machine learning procedure devoted to generating accurate force fields. The comparison of our simulated hydrated actinide properties to available experimental data shows the model robustness and the relevance of our parameter assignment engine. Moreover, our simulated structural, dynamical and evolution of the hydration free energy data show that, apart from AmIV and CmIV, the actinide properties change progressively along the series.
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Investigation of the preferential solvation and dynamical properties of Cu+ in 18.6% aqueous ammonia solution using ab initio quantum mechanical charge field (QMCF) molecular dynamics and NBO analysis. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2018.11.022] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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6
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Shen S, Chi X, Dong J, Huo S, Tian H, Xu L, Shi T. Oxidation of the drug tiopronin by Cerium(IV) in perchloric acid media: Kinetic and mechanistic analyses. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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7
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Saleh M, Hofer TS. Structure and dynamics of Ni2+ in liquid ammonia: A quantum mechanical charge field molecular dynamics (QMCF-MD) study. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2016.09.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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8
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Canaval LR, Passler PP, Rode BM. The hydration properties of Gd(III) and Tb(III): An ab initio quantum mechanical molecular dynamics study. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.02.043] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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9
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Elmaci G, Frey CE, Kurz P, Zümreoğlu-Karan B. Water Oxidation Catalysis by Birnessite@Iron Oxide Core–Shell Nanocomposites. Inorg Chem 2015; 54:2734-41. [DOI: 10.1021/ic502908w] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Gökhan Elmaci
- Chemistry
Department, Hacettepe University, Beytepe Campus, 06800 Ankara, Turkey
| | - Carolin E. Frey
- Institut für Anorganische und Analytische Chemie, Albert-Ludwigs-Universität Freiburg, Albertstraße 21, 79104 Freiburg, Germany
| | - Philipp Kurz
- Institut für Anorganische und Analytische Chemie, Albert-Ludwigs-Universität Freiburg, Albertstraße 21, 79104 Freiburg, Germany
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10
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Codolà Z, Gómez L, Kleespies ST, Que L, Costas M, Lloret-Fillol J. Evidence for an oxygen evolving iron-oxo-cerium intermediate in iron-catalysed water oxidation. Nat Commun 2015; 6:5865. [PMID: 25609387 DOI: 10.1038/ncomms6865] [Citation(s) in RCA: 113] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Accepted: 11/17/2014] [Indexed: 02/08/2023] Open
Abstract
The non-haem iron complex α-[Fe(II)(CF3SO3)2(mcp)] (mcp=(N,N'-dimethyl-N,N'-bis(2-pyridylmethyl)-1,2-cis-diaminocyclohexane) reacts with Ce(IV) to oxidize water to O2, representing an iron-based functional model for the oxygen evolving complex of photosystem II. Here we trap an intermediate, characterized by cryospray ionization high resolution mass spectrometry and resonance Raman spectroscopy, and formulated as [(mcp)Fe(IV)(O)(μ-O)Ce(IV)(NO3)3](+), the first example of a well-characterized inner-sphere complex to be formed in cerium(IV)-mediated water oxidation. The identification of this reactive Fe(IV)-O-Ce(IV) adduct may open new pathways to validate mechanistic notions of an analogous Mn(V)-O-Ca(II) unit in the oxygen evolving complex that is responsible for carrying out the key O-O bond forming step.
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Affiliation(s)
- Zoel Codolà
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus de Montilivi, 17071 Girona, Spain
| | - Laura Gómez
- Department of Chemistry and Center for Metals in Biocatalysis, University of Minnesota, 207 Pleasant St S.E., Minneapolis, Minnesota 55455, USA
| | - Scott T Kleespies
- Serveis Tècnics de Recerca (STR), Parc Cientific i Tecnològic, Universitat de Girona, 17003 Girona, Spain
| | - Lawrence Que
- Serveis Tècnics de Recerca (STR), Parc Cientific i Tecnològic, Universitat de Girona, 17003 Girona, Spain
| | - Miquel Costas
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus de Montilivi, 17071 Girona, Spain
| | - Julio Lloret-Fillol
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus de Montilivi, 17071 Girona, Spain
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11
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Lithium(I) in liquid ammonia: A quantum mechanical charge field (QMCF) molecular dynamics simulation study. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2014.11.066] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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12
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Canaval LR, Rode BM. The hydration properties of Eu(II) and Eu(III): An ab initio quantum mechanical molecular dynamics study. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2014.10.060] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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13
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Theoretical Study on the Hydration Structure of Divalent Radium Ion Using Fragment Molecular Orbital–Molecular Dynamics (FMO–MD) Simulation. J SOLUTION CHEM 2014. [DOI: 10.1007/s10953-014-0235-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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14
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Tirler AO, Hofer TS. Structure and Dynamics of the Uranyl Tricarbonate Complex in Aqueous Solution: Insights from Quantum Mechanical Charge Field Molecular Dynamics. J Phys Chem B 2014; 118:12938-51. [DOI: 10.1021/jp503171g] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Andreas O. Tirler
- Theoretical
Chemistry Division,
Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80-82, A-6020 Innsbruck, Austria
| | - Thomas S. Hofer
- Theoretical
Chemistry Division,
Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80-82, A-6020 Innsbruck, Austria
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15
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Kalaji A, Skanthakumar S, Kanatzidis MG, Mitchell JF, Soderholm L. Changing Hafnium Speciation in Aqueous Sulfate Solutions: A High-Energy X-ray Scattering Study. Inorg Chem 2014; 53:6321-8. [DOI: 10.1021/ic500938k] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Ali Kalaji
- Chemical
Sciences and Engineering Division, ‡Materials Science Division, Argonne National
Laboratory, Argonne, Illinois 60439, United States
| | - S. Skanthakumar
- Chemical
Sciences and Engineering Division, ‡Materials Science Division, Argonne National
Laboratory, Argonne, Illinois 60439, United States
| | - Mercouri G. Kanatzidis
- Chemical
Sciences and Engineering Division, ‡Materials Science Division, Argonne National
Laboratory, Argonne, Illinois 60439, United States
| | - John F. Mitchell
- Chemical
Sciences and Engineering Division, ‡Materials Science Division, Argonne National
Laboratory, Argonne, Illinois 60439, United States
| | - L. Soderholm
- Chemical
Sciences and Engineering Division, ‡Materials Science Division, Argonne National
Laboratory, Argonne, Illinois 60439, United States
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16
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Computational Vibrational Spectroscopy of glycine in aqueous solution – Fundamental considerations towards feasible methodologies. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.03.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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17
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Canaval LR, Weiss AK, Rode BM. Structure and dynamics of the Th4+-ion in aqueous solution – An ab initio QMCF-MD study. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.08.020] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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18
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Hitzenberger M, Hofer TS, Weiss AKH. Solvation properties and behaviour of lutetium(III) in aqueous solution—A quantum mechanical charge field (QMCF) study. J Chem Phys 2013; 139:114306. [DOI: 10.1063/1.4820879] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
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19
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Moin ST, Hofer TS, Weiss AKH, Rode BM. Dynamics of ligand exchange mechanism at Cu(II) in water: An ab initio quantum mechanical charge field molecular dynamics study with extended quantum mechanical region. J Chem Phys 2013; 139:014503. [DOI: 10.1063/1.4811114] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
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20
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Lutz OMD, Messner CB, Hofer TS, Glätzle M, Huck CW, Bonn GK, Rode BM. Combined Ab Initio Computational and Infrared Spectroscopic Study of the cis- and trans-Bis(glycinato)copper(II) Complexes in Aqueous Environment. J Phys Chem Lett 2013; 4:1502-1506. [PMID: 26282305 DOI: 10.1021/jz400288c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The cis- and trans-bis(glycinato)copper(II) complexes in aqueous solution have been investigated by means of a combined theoretical and experimental approach. The conducted quantum mechanical charge field molecular dynamics (QMCF-MD) studies, being the first quantum mechanical simulations of organometallic complexes by this method, yielded accurate structural details of the investigated isomers as well as novel dynamic data, which has successfully been confirmed and extended by subsequent mid-infrared measurements. The spectroscopic results, critically assessed by adjacent multivariate data analysis, indicate an isomeric stability at ambient conditions, vanishing at elevated temperatures.
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Affiliation(s)
- Oliver M D Lutz
- †Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, ‡Institute of Analytical Chemistry and Radiochemistry, and ⊥General and Inorganic Chemistry Divison, Institute of General, Inorganic and Theoretical Chemistry, Leopold-Franzens University, Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Christoph B Messner
- †Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, ‡Institute of Analytical Chemistry and Radiochemistry, and ⊥General and Inorganic Chemistry Divison, Institute of General, Inorganic and Theoretical Chemistry, Leopold-Franzens University, Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Thomas S Hofer
- †Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, ‡Institute of Analytical Chemistry and Radiochemistry, and ⊥General and Inorganic Chemistry Divison, Institute of General, Inorganic and Theoretical Chemistry, Leopold-Franzens University, Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Matthias Glätzle
- †Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, ‡Institute of Analytical Chemistry and Radiochemistry, and ⊥General and Inorganic Chemistry Divison, Institute of General, Inorganic and Theoretical Chemistry, Leopold-Franzens University, Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Christian W Huck
- †Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, ‡Institute of Analytical Chemistry and Radiochemistry, and ⊥General and Inorganic Chemistry Divison, Institute of General, Inorganic and Theoretical Chemistry, Leopold-Franzens University, Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Günther K Bonn
- †Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, ‡Institute of Analytical Chemistry and Radiochemistry, and ⊥General and Inorganic Chemistry Divison, Institute of General, Inorganic and Theoretical Chemistry, Leopold-Franzens University, Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Bernd M Rode
- †Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, ‡Institute of Analytical Chemistry and Radiochemistry, and ⊥General and Inorganic Chemistry Divison, Institute of General, Inorganic and Theoretical Chemistry, Leopold-Franzens University, Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
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21
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Pedevilla PA, Hofer TS, Randolf BR, Rode BM. Simulation of Ir(III) in Aqueous Solution: The Most Inert Ion Hydrate. Aust J Chem 2012. [DOI: 10.1071/ch12303] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The ab initio quantum mechanical charge field (QMCF) molecular dynamics (MD) approach at Hartree-Fock level was used to simulate the tripositive iridium ion in aqueous solution, evaluating structure and dynamics of its hydrate complex. The Ir-OH2 force constant was of particular interest because of the observed high inertness of Ir(iii) in aqueous solution. Iridium forms three hydration shells. Six water molecules coordinate the ion in the first hydration shell in a well defined octahedral geometry, and no exchanges took place during the simulation time of 15 ps. The second hydration shell is very flexible, however, with a mean residence time of a water molecule of 3.6 ps. The third shell can be identified only by a slight ordering effect. This investigation classified the Ir-OH2 force constant as the strongest ion-OH2 bond known to date.
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