Rational Design of a Ratiometric and Targetable Fluorescent Probe for Imaging Lysosomal Zinc Ions

Advances in Organic Fluorescent Probes for Intracellular Zn2+ Detection and Bioimaging

Zinc ions (Zn2+) play a key role in maintaining and regulating protein structures and functions. To better understand the intracellular Zn2+ homeostasis and signaling role, various fluorescent sensors have been developed that allow the monitoring of Zn2+ concentrations and bioimaging in live cells in real time. This review highlights the recent development of organic fluorescent probes for the detection and imaging of intracellular Zn2+, including the design and construction of the probes, fluorescent response mechanisms, and their applications to intracellular Zn2+ detection and imaging on-site. Finally, the current challenges and prospects are discussed.

Aza-phenol Based Macrocyclic Probes Design for "CHEF-on" Multi Analytes Sensor: Crystal Structure Elucidation and Application in Biological Cell Imaging

Metal bound macrocyclic compounds found in biological systems inspired us to design and synthesize two Robson-type macrocyclic Schiff-base chemosensors, H ₂ L1 (H ₂ L1=1,11-dimethyl-6,16-dithia-3,9,13,19-tetraaza-1,11(1,3)-dibenzenacycloicosaphane-2,9,12,19-tetraene-1,11-diol) and H ₂ L2 (H ₂ L2=1,11-dimethyl-6,16-dioxa-3,9,13,19-tetraaza-1,11(1,3)-dibenzenacycloicosaphane-2,9,12,19-tetraene-1,11-diol). Both the chemosensors have been characterized with different spectroscopic techniques. They act as multianalyte sensor and exhibit "turn-on" fluorescence toward different metal ions in 1X PBS (Phosphate Buffered Saline) solution. In presence of Zn²⁺, Al³⁺, Cr³⁺ and Fe³⁺ ions, H ₂ L1 exhibits ∼6-fold enhancement of emission intensity, while H ₂ L2 shows ∼6-fold enhancement of emission intensity in the presence of Zn²⁺, Al³⁺ and Cr³⁺ ions. The interaction between the different metal ion and chemosensor have been examined by absorption, emission, and ¹H NMR spectroscopy as well as by ESI-MS⁺ analysis. We have successfully isolated and solved the crystal structure of the complex [Zn(H ₂ L1)(NO₃)]NO₃ (1) by X-ray crystallography. The crystal structure of 1 shows 1:1 metal:ligand stoichiometry and helps to understand the observed PET-Off-CHEF-On sensing mechanism. LOD values of H ₂ L1 and H ₂ L2 toward metal ions are found to be ∼10^-8 and ∼10^-7 M, respectively. Large Stokes shifts of the probes against analytes (∼100 nm) make them a suitable candidate for biological cell imaging studies. Robson type phenol based macrocyclic fluorescence sensors are very scarce in the literature. Therefore, the tuning of structural parameters as the number and nature of donor atoms, their relative locations and presence of rigid aromatic groups can lead to the design of new chemosensors, which can accommodate different charged/neutral guest(s) inside its cavity. The study of the spectroscopic properties of this type of macrocyclic ligands and their complexes might open a new avenue of chemosensors.

A Schiff-based AIE fluorescent probe for Zn2+ detection and its application as "fluorescence paper-based indicator"

A Schiff-based aggregation induced emission (AIE) fluorescent probe with excited intramolecular proton transfer (ESIPT) mechanism was synthesized by grafting 2-hydrazinobenzothiazole onto 2,6-diformyl-4-methylphenol. The probe recognizes Zn²⁺ selectively and sensitively, accompanied by a significant fluorescence emission increasement change from light yellow-green to strong green. Additionally, a stabilization time of at least 30 min was kept in the recognition process. Besides, a linear relationship was observed between the concentration of Zn²⁺ and the fluorescence intensity at 525 nm (0.05-10 µM). And thus, the probe can detect Zn²⁺ quantitatively in aqueous solution with a low detection limit of 1.9 × 10^-8 M. Based on the AIE property and the selective recognition of Zn²⁺, SCH was strategically loaded on the filter paper to develop a novel paper-based indicator for on-site and high-efficiency detection of Zn²⁺. The results showed that the paper-based indicator could be conveniently applied to the visual inspection of Zn²⁺ as expected and SCH in the paper-based indicators fortunately exhibited a better stability. Furthermore, our comprehensive application evaluations have confirmed that SCH was capable of detecting Zn²⁺ in real water samples and imaging Zn²⁺ in living cells roundly.

3-Hydroxyflavone derivatives: promising scaffolds for fluorescent imaging in cells

As a typical class of excited-state intramolecular proton transfer (ESIPT) molecules, 3-hydroxyflavone derivatives (3HF, also known as flavonols) have received much attention recently. Thereinto, the role of hydrophobic microenvironment is significant importance in promoting the process and effects of ESIPT, which can be regulated by the solvents, the existence of metal ions and proteins rich with α-helix structures or the advanced DNA structures. Considering that plenty of biological macromolecules offer cellular hydrophobic microenvironment, enhancing the ESIPT effects and resulting in dual emission, 3HF could be a promising scaffold for the development of fluorescent imaging in cells. Furthermore, as the widespread occurance of compounds with biological activity in plants, 3HF derivatives are much more secure to be cellular diagnosis and treatment integrated fluorescent probes. In this review, multiple regulatory strategies for the fluorescence emission of 3HF derivatives have been collectively and comprehensively analyzed, including the solvent effects, metal chelation, interaction with proteins or DNAs, which would be beneficial for ESIPT-promoting or ESIPT-blocking processes and then enhance or control the fluorescence emission of 3HF effectively. We expect that this review would provide a new perspective to develop novel 3HF-based fluorescent sensors for imaging in cells and plants.

Ratiometric sensing of Zn2+ with a new benzothiazole-based fluorescent sensor and living cell imaging

A new fluorescent probe, 3-(benzo[d]thiazol-2-yl)-5-bromosalicylaldehyde-⁴N-phenyl thiosemicarbazone (BTT), for ratiometric sensing of Zn²⁺ ions in methanol/HEPES buffer solution (3 : 2, pH = 7.4) is reported in this paper. The presence of Zn²⁺ ions yields a significant blue shift in the maximum emission of BTT from 570 nm to 488 nm, accompanied by a clear color change from orange to green. This emission change of BTT upon binding to Zn²⁺ in a 1 : 1 ratio may be due to the block of excited state intramolecular proton transfer (ESIPT) as well as chelation enhanced fluorescence (CHEF) on complex formation. The limit of detection (LOD) determined for Zn²⁺ quantitation was down to 37.7 nM. In addition, the probe BTT displays the ability to image both exogenous Zn²⁺ ions loaded into HeLa cells and endogenous Zn²⁺ distribution in living SH-SY5Y neuroblastoma cells.

Subcellular localised small molecule fluorescent probes to image mobile Zn2

Zn2+, as the second most abundant d-block metal in the human body, plays an important role in a wide range of biological processes, and the dysfunction of its homeostasis is related to many diseases, including Type 2 diabetes, Alzheimer's disease and prostate and breast cancers. Small molecule fluorescent probes, as effective tools for real-time imaging, have been widely used to study Zn2+ related processes. However, the failure to control their localisation in cells has limited their utility somewhat, as they are generally incapable of studying individual processes in a specific cellular location. This perspective presents an overview of the recent developments in specific organelle localised small molecule fluorescent Zn2+ probes and their application in biological milieu, which could help to extend our understanding of the mechanisms that cells use to respond to dysfunction of zinc homeostasis and its roles in disease initiation and development.

The development of two fluorescent chemosensors for the selective detection of Zn2+ and Al3+ ions in a quinoline platform by tuning the substituents in the receptor part: elucidation of the structures of the metal-bound chemosensors and biological studies

Two aminoquinoline-based chemosensors (HL1 and HL2) are reported for selective detection of Zn²⁺ and Al³⁺ ions.

Endoplasmic reticulum targeting fluorescent probes to image mobile Zn2

Zn2+ plays an important role in the normal function of the endoplasmic reticulum (ER) and its deficiency can cause ER stress, which is related to a wide range of diseases. In order to provide tools to better understand the role of mobile Zn2+ in ER processes, the first custom designed ER-localised fluorescent Zn2+ probes have been developed through the introduction of a cyclohexyl sulfonylurea as an ER-targeting unit with different Zn2+ receptors. Experiments in vitro and in cellulo show that both probes have a good fluorescence switch on response to Zn2+, high selectivity over other cations, low toxicity, ER-specific targeting ability and are efficacious imaging agents for mobile Zn2+ in four different cell lines. Probe 9 has been used to detect mobile Zn2+ changes under ER stress induced by both tunicamycin or thapsigargin, which indicates that the new probes should allow a better understanding of the mechanisms cells use to respond to dysfunction of zinc homeostasis in the ER and its role in the initiation and progression of diseases to be developed.

An alternative modular 'click-SNAr-click' approach to develop subcellular localised fluorescent probes to image mobile Zn2+

Zn2+ is involved in a number of biological processes and its wide-ranging roles at the subcellular level, especially in specific organelles, have not yet been fully established due to a lack of tools to image it effectively. We report a new and efficient modular double 'click' approach towards a range of sub-cellular localised probes for mobile zinc. Through this methodology, endoplasmic reticulum, mitochondria and lysosome localised probes were successfully prepared which show good fluorescence responses to mobile Zn2+in vitro and in cellulo whilst a non-targeting probe was synthesized as a control. The methodology appears to have wide-utility for the generation of sub-cellular localised probes by incorporating specific organelle targeting vectors for mobile Zn2+ imaging.

Small-molecule fluorescent probes for specific detection and imaging of chemical species inside lysosomes

In the past few years, the preparation of novel small-molecule fluorescent probes for specific detection and imaging of chemical species inside lysosomes has attracted considerable attention because of their wide applications in chemistry, biology, and medical science. This feature article summarizes the recent advances in the design and preparation of small-molecule fluorescent probes for specific detection of chemical species inside lysosomes. In addition, their properties and applications for the detection and imaging of pH, H2O2, HOCl, O2˙-, lipid peroxidation, H2S, HSO3-, thiols, NO, ONOO-, HNO, Zn2+, Cu2+, enzymes, etc. in lysosomes are discussed as well.

A novel fluorescent turn-on probe for imaging biothiols based on SNAr substitution-skeletal rearrangement strategy

2is a novel fluorescent turn-on probe for imaging biothiols based on S_NAr substitution-skeletal rearrangement strategy with dramatic fluorescence enhancement and high sensitivity.

Fluorescent Proteins for Investigating Biological Events in Acidic Environments

The interior lumen of acidic organelles (e.g., endosomes, secretory granules, lysosomes and plant vacuoles) is an important platform for modification, transport and degradation of biomolecules as well as signal transduction, which remains challenging to investigate using conventional fluorescent proteins (FPs). Due to the highly acidic luminal environment (pH ~ 4.5⁻6.0), most FPs and related sensors are apt to lose their fluorescence. To address the need to image in acidic environments, several research groups have developed acid-tolerant FPs in a wide color range. Furthermore, the engineering of pH insensitive sensors, and their concomitant use with pH sensitive sensors for the purpose of pH-calibration has enabled characterization of the role of luminal ions. In this short review, we summarize the recent development of acid-tolerant FPs and related functional sensors and discuss the future prospects for this field.

A hexa-quinoline basedC3-symmetric chemosensor for dual sensing of zinc(ii) and PPi in an aqueous mediumviachelation induced “OFF–ON–OFF” emission

“OFF–ON–OFF” luminescence switching behavior of a hexa-quinoline based sensor towards Zn²⁺and PPi in an aqueous buffer medium is demonstrated.

A diketopyrrolopyrrole-based fluorescent probe for investigating mitochondrial zinc ions

We report a diketopyrrolopyrrole-based fluorescent probe DPP-Mito, which is low toxicity and mitochondrial-specific localization and could monitor the changes in the intracellular Zn²⁺ concentrations.

Polymerization led selective detection and removal of Zn2+and Cd2+ions: isolation of Zn- and Cd-MOFs and reversibility studies

Two post-functionalized chemosensors display remarkable sensing of Zn²⁺and Cd²⁺ionsviagenerating corresponding metal–organic frameworks (MOFs), whereas nitrate and nitrite ions reverse the MOF-polymerization process.

Imaging of formaldehyde in plants with a ratiometric fluorescent probe

The fluorescence monitoring of formaldehyde in real environmental samples and live plant tissues is of great importance for physiological and pathological studies. However, there is a lack of suitable chemical tools to directly trace and measure the formaldehyde activity in bio-systems, and developing effective and, in particular, selective sensors for mapping formaldehyde in live tissues still remains a great challenge. Here, we demonstrate for the first time that the ratiometric fluorescence monitoring of formaldehyde in live plant tissues is achieved with a newly developed ratiometric fluorescent probe, FAP, which effectively eliminated interference from other comparative analytes. Live tissue analyses reveal that FAP can potentially detect exogenous and endogenous formaldehyde in live Arabidopsis thaliana tissues, exposing a potential application for biological and pathological studies of formaldehyde.

Low-Affinity Zinc Sensor Showing Fluorescence Responses with Minimal Artifacts

The study of the zinc biology requires molecular probes with proper zinc affinity. We developed a low-affinity zinc probe (HBO-ACR) based on an azacrown ether (ACR) and an 2-(2-hydroxyphenyl)benzoxazole (HBO) fluorophore. This probe design imposed positive charge in the vicinity of a zinc coordination center, which enabled fluorescence turn-on responses to high levels of zinc without being affected by the pH and the presence of other transition-metal ions. Steady-state and transient photophysical investigations suggested that such a high tolerance benefits from orchestrated actions of proton-induced nonradiative and zinc-induced radiative control. The zinc bioimaging utility of HBO-ACR has been fully demonstrated with the use of human pancreas epidermoid carcinoma, PANC-1 cells, and rodent hippocampal neurons from cultures and acute brain slices. The results obtained through our studies established the validity of incorporating positively charged ionophores for the creation of low-affinity probes for the visualization of biometals.

Zinc(II) Ion Sensing in Aqueous Micellar Solution Using Modified Bipyridine-Based "Turn-On" Fluorescent Probes and its Application in Bioimaging

The bipyridine-based constructs 4-(pyridine-2-yl)-3H-pyrrolo[2,3-c]quinoline (PPQ) and [6-(3H-pyrrolo[2,3-c]quinolin-4-yl)pyridin-2-yl]methanol (PPQ-OH) and their assemblies with surfactants are evaluated as turn-on fluorescent sensors for Zn²⁺ ions in aqueous solution. This study strives to overcome the problem of low water solubility of the hydrophobic PPQ and PPQ-OH by using micelles. Whereas the ligands show selective sensing behavior for Zn²⁺ over important biological cations including Na⁺ , K⁺ , Ca²⁺ , Mg²⁺ in anionic sodium dodecyl sulfate and non-ionic Tween 80 micelles, no Zn²⁺ sensing is observed in cationic cetyltrimethylammonium bromide micelles. Unlike in DMF, Cd²⁺ interference is observed in aqueous conditions, which can be avoided either by performing the study at pH≥9 or by carrying out a time-resolved fluorescence study. Analysis of the Job plot data, the fluorescence lifetimes, and experiments on varying micellar shape and pH, confirms that the coordination volume of the resulting octahedral metal complex and formation of a five-membered chelate ring are critical factors for Cd²⁺ interference. The described sensing systems are capable of detecting Zn²⁺ ions at the micromolar level. Additionally, it is shown that PPQ and PPQ-OH can be used to detect Zn²⁺ in HeLa cells under physiological conditions in bioimaging studies.

A two-photon fluorescent probe for lysosomal zinc ions

The selective detection of zinc ions in lysosomes over that in cytosol is achieved with a fluorescent probe, which enabled the fluorescence imaging of endogenous zinc ions in lysosomes of NIH 3T3 cells as well as mouse hippocampal tissues by two-photon microscopy under excitation at 900 nm.

A DPA-based highly selective and sensitive fluorescent probe for mercuric ions and its imaging in living cells

A DPA-based fluorescent probe was designed and synthesized for the recognition of mercuric ions and imaging in living cells. The fluorescent probe exhibits excellent selectivity and sensitivity toward Hg²⁺, and the detection limit was calculated to be 5.49 nM.

Near-infrared fluorescent probes based on piperazine-functionalized BODIPY dyes for sensitive detection of lysosomal pH

Three acidotropic, near-infrared fluorescent probes based on piperazine-modified BODIPY dyes (A, B and C) have been developed for the sensitive and selective detection of lysosomal pH in living cells. Probes A and B display low solubilities in aqueous solutions, whereas probe C is highly water-soluble. The fluorescent responsive mechanism of these probes to lysosomal pH is based on intramolecular charge transfer (ICT) and potential photo-induced electron transfer from piperazine moieties at 3,5-positions to BODIPY cores in the near-infrared region. The sensitivity and selectivity of the probes to pH over metal ions have been investigated by spectroscopic analysis in aqueous solutions. The probes have low auto-fluorescence at physiological pH conditions, whereas their fluorescence intensities significantly increase when pH is shifted to an acidic condition. Furthermore, these three probes were successfully applied to the in vitro lysosome imaging inside normal endothelial and breast cancer cells.

A fluorescent indicator for imaging lysosomal zinc(II) with Förster resonance energy transfer (FRET)-enhanced photostability and a narrow band of emission

We demonstrate a strategy to transfer the zinc(II) sensitivity of a fluoroionophore with low photostability and a broad emission band to a bright and photostable fluorophore with a narrow emission band. The two fluorophores are covalently connected to afford an intramolecular Förster resonance energy transfer (FRET) conjugate. The FRET donor in the conjugate is a zinc(II)-sensitive arylvinylbipyridyl fluoroionophore, the absorption and emission of which undergo bathochromic shifts upon zinc(II) coordination. When the FRET donor is excited, efficient intramolecular energy transfer occurs to result in the emission of the acceptor boron dipyrromethene (4,4-difluoro-4-bora-3a,4a-diaza-s-indacene or BODIPY) as a function of zinc(II) concentration. The broad emission band of the donor/zinc(II) complex is transformed into the strong, narrow emission band of the BODIPY acceptor in the FRET conjugates, which can be captured within the narrow emission window that is preferred for multicolor imaging experiments. In addition to competing with other nonradiative decay processes of the FRET donor, the rapid intramolecular FRET of the excited FRET-conjugate molecule protects the donor fluorophore from photobleaching, thus enhancing the photostability of the indicator. FRET conjugates 3 and 4 contain aliphatic amino groups, which selectively target lysosomes in mammalian cells. This subcellular localization preference was verified by using confocal fluorescence microscopy, which also shows the zinc(II)-enhanced emission of 3 and 4 in lysosomes. It was further shown using two-color structured illumination microscopy (SIM), which is capable of extending the lateral resolution over the Abbe diffraction limit by a factor of two, that the morpholino-functionalized compound 4 localizes in the interior of lysosomes, rather than anchoring on the lysosomal membranes, of live HeLa cells.

A reversible fluorescent-colorimetric imino-pyridyl bis-Schiff base sensor for expeditious detection of Al3+ and HSO3− in aqueous media

A reversible fluorescent-colorimetric imino-pyridyl bis-Schiff base receptor (N¹E,N⁴E)-N¹,N⁴-bis(pyridine-4-ylmethylene)benzene-1,4-diamine (L) for easy, convenient, rapid and sensitive detection of both Al³⁺ and HSO₃⁻ in aqueous medium has been developed.

Highly selective arylhydrazone based “ON–OFF” fluorescent chemosensors for Zn2+ion, inhibitors for KB cell, 4LRH cancer protein and DFT studies

Arylhydrazone based new Zn²⁺“ON–OFF” chemosensors in neutral aqueous ethanol medium have been designed by simple method. Additionally their cytotoxic activity towards KB cell and molecular docking with 4LRH cancer proteins also investigated.

Naphthalene diimides as red fluorescent pH sensors for functional cell imaging

Water-soluble naphthalene diimides have been designed and synthesized as cell permeable pH “turned-on” fluorescent sensors for cellular applications.

Photoluminescence imaging of Zn2+in living systems

Advances in PL imaging techniques, such as confocal microscopy, two photon microscopy, lifetime and optical imaging techniques, have made remarkable contributions in Zn²⁺tracking.

A Fluorescent Indicator for Imaging Lysosomal Zinc(II) with Förster Resonance Energy Transfer (FRET)-Enhanced Photostability and a Narrow Band of Emission

We demonstrate a strategy to transfer the zinc(II) sensitivity of a fluoroionophore with low photostability and a broad emission band to a bright and photostable fluorophore with a narrow emission band. The two fluorophores are covalently connected to afford an intramolecular Förster resonance energy transfer (FRET) conjugate. The FRET donor in the conjugate is a zinc(II)-sensitive arylvinylbipyridyl fluoroionophore, the absorption and emission of which undergo bathochromic shifts upon zinc(II) coordination. When the FRET donor is excited, efficient intramolecular energy transfer occurs to result in the emission of the acceptor boron dipyrromethene (4,4-difluoro-4-bora-3a,4a-diaza-s-indacene or BODIPY) as a function of zinc(II) concentration. The broad emission band of the donor/zinc(II) complex is transformed into the strong, narrow emission band of the BODIPY acceptor in the FRET conjugates, which can be captured within the narrow emission window that is preferred for multicolor imaging experiments. In addition to competing with other nonradiative decay processes of the FRET donor, the rapid intramolecular FRET of the excited FRET-conjugate molecule protects the donor fluorophore from photobleaching, thus enhancing the photostability of the indicator. FRET conjugates 3 and 4 contain aliphatic amino groups, which selectively target lysosomes in mammalian cells. This subcellular localization preference was verified by using confocal fluorescence microscopy, which also shows the zinc(II)-enhanced emission of 3 and 4 in lysosomes. It was further shown using two-color structured illumination microscopy (SIM), which is capable of extending the lateral resolution over the Abbe diffraction limit by a factor of two, that the morpholino-functionalized compound 4 localizes in the interior of lysosomes, rather than anchoring on the lysosomal membranes, of live HeLa cells.

Biologically targeted probes for Zn2+: a diversity oriented modular "click-SNAr-click" approach†Electronic supplementary information (ESI) available: Full experimental details including characterisation of all novel compounds can be found in the ESI. See DOI: 10.1039/c4sc01249f

We describe a one-pot strategy for the high yielding, operationally simple synthesis of fluorescent probes for Zn2+ that bear biological targeting groups and exemplify the utility of our method through the preparation of a small library of sensors. Investigation of the fluorescence behaviour of our library revealed that although all behaved as expected in MeCN, under biologically relevant conditions in HEPES buffer, a plasma membrane targeting sensor displayed a dramatic switch on response to excess Zn2+ as a result of aggregation phenomena. Excitingly, in cellulo studies in mouse pancreatic islets demonstrated that this readily available sensor was indeed localised to the exterior of the plasma membrane and clearly responded to the Zn2+ co-released when the pancreatic beta cells were stimulated to release insulin. Conversely, sensors that target intracellular compartments were unaffected. These results demonstrate that this sensor has the potential to allow the real time study of insulin release from living cells and exemplifies the utility of our simple synthetic approach.

In vivo ratiometric Zn2+ imaging in zebrafish larvae using a new visible light excitable fluorescent sensor

A visible light excitable ratiometric Zn(2+) sensor was developed by integrating a Zn(2+) chelator as the ICT donor of the fluorophore sulfamoylbenzoxadiazole, which displays the Zn(2+)-induced hypsochromic emission shift (40 nm) and favors the in vivo ratiometric Zn(2+) imaging in zebrafish larvae.

Fluorescence turn-on detection of Sn2+ in live eukaryotic and prokaryotic cells

Fluorescence turn-on probes for selective detection of Sn(ii) in live eukaryotic and prokaryotic cells were developed.

A turn-on fluorescent probe for imaging lysosomal hydrogen sulfide in living cells

A 1,8-naphthalimide-derived fluorescent probe for lysosomal H₂S based on the reduction of azide is reported.