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Pathak K, Mishra S, Bairagi S, Rajeshwaree B, Dutta A, Ghosh S. Thiolate-Bridged Heterodinuclear Manganese–Cobalt Complexes with Bridging Hydride Ligands. Organometallics 2022. [DOI: 10.1021/acs.organomet.2c00421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Kriti Pathak
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, India
| | - Shivankan Mishra
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, India
| | - Subhash Bairagi
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, India
| | - B. Rajeshwaree
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Arnab Dutta
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Sundargopal Ghosh
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, India
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2
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Börner M, Fuhrmann D, Klose J, Krautscheid H, Kersting B. Ethereal Hydroperoxides: Powerful Reagents for S-Oxygenation of Bridging Thiophenolate Functions. Inorg Chem 2021; 60:13517-13527. [PMID: 34415154 DOI: 10.1021/acs.inorgchem.1c01854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
S-Oxygenation of thiophenolate bridges by ethereal hydroperoxides was studied. [NiII2LS(PhCO2)]+ (1), where LS = macrocyclic aminethiolate supporting ligand, is S-oxygenated readily in a mixed methanol/acetonitrile solution with ether/dioxygen at room temperature in the presence of daylight. The reactions were found to depend strongly on the choice of the ether. Uptake of two O atoms occurs in dioxane to give a mixed thiolate/sulfinate complex [NiII2LSO2(PhCO2)]+ (2) containing the rare five-membered Ni(μ1,1-S)(μ1,2-OS)Ni core. In tetrahydrofuran, four O atoms are taken up by 1 to generate the bis(sulfinate) species [NiII2LSO4(PhCO2)]+ (3). A mono-S-oxygenated sulfenate intermediate can be detected by electrospray ionization mass spectrometry. The oxygenation reactions proceed in high yields without complex disintegration and invariably provide μ1,2-bridging sulfinates as established by spectroscopy (IR and UV/vis), X-ray crystallography, and accompanying density functional theory calculations. The oxygenation of the S atoms has a strong impact on the electronic structures of the nickel complexes. The monosulfinate complex 2 has an S = 2 ground state resulting from moderate ferromagnetic exchange coupling interactions (J = +15.7 cm-1; H = -2JS1S2), while an antiferromagnetic exchange interaction in 3 shows the presence of a ground state with spin S = 0 (J = -0.56 cm-1).
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Affiliation(s)
- Martin Börner
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany.,Leibniz-Institut für Oberflächenmodifizierung, Abteilung Funktionale Oberflächen, Permoserstrasse 15, D-04318 Leipzig, Germany
| | - Daniel Fuhrmann
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany
| | - Jennifer Klose
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany
| | - Harald Krautscheid
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany
| | - Berthold Kersting
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany
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3
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Edmonds KA, Jordan MR, Giedroc DP. COG0523 proteins: a functionally diverse family of transition metal-regulated G3E P-loop GTP hydrolases from bacteria to man. Metallomics 2021; 13:6327566. [PMID: 34302342 PMCID: PMC8360895 DOI: 10.1093/mtomcs/mfab046] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 07/15/2021] [Indexed: 01/13/2023]
Abstract
Transition metal homeostasis ensures that cells and organisms obtain sufficient metal to meet cellular demand while dispensing with any excess so as to avoid toxicity. In bacteria, zinc restriction induces the expression of one or more Zur (zinc-uptake repressor)-regulated Cluster of Orthologous Groups (COG) COG0523 proteins. COG0523 proteins encompass a poorly understood sub-family of G3E P-loop small GTPases, others of which are known to function as metallochaperones in the maturation of cobalamin (CoII) and NiII cofactor-containing metalloenzymes. Here, we use genomic enzymology tools to functionally analyse over 80 000 sequences that are evolutionarily related to Acinetobacter baumannii ZigA (Zur-inducible GTPase), a COG0523 protein and candidate zinc metallochaperone. These sequences segregate into distinct sequence similarity network (SSN) clusters, exemplified by the ZnII-Zur-regulated and FeIII-nitrile hydratase activator CxCC (C, Cys; X, any amino acid)-containing COG0523 proteins (SSN cluster 1), NiII-UreG (clusters 2, 8), CoII-CobW (cluster 4), and NiII-HypB (cluster 5). A total of five large clusters that comprise ≈ 25% of all sequences, including cluster 3 which harbors the only structurally characterized COG0523 protein, Escherichia coli YjiA, and many uncharacterized eukaryotic COG0523 proteins. We also establish that mycobacterial-specific protein Y (Mpy) recruitment factor (Mrf), which promotes ribosome hibernation in actinomycetes under conditions of ZnII starvation, segregates into a fifth SSN cluster (cluster 17). Mrf is a COG0523 paralog that lacks all GTP-binding determinants as well as the ZnII-coordinating Cys found in CxCC-containing COG0523 proteins. On the basis of this analysis, we discuss new perspectives on the COG0523 proteins as cellular reporters of widespread nutrient stress induced by ZnII limitation.
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Affiliation(s)
- Katherine A Edmonds
- Department of Chemistry, Indiana University, Bloomington, IN 47405-7102, USA
| | - Matthew R Jordan
- Department of Chemistry, Indiana University, Bloomington, IN 47405-7102, USA.,Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA
| | - David P Giedroc
- Department of Chemistry, Indiana University, Bloomington, IN 47405-7102, USA.,Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA
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Wu YY, Hong JC, Tsai RF, Pan HR, Huang BH, Chiang YW, Lee GH, Cheng MJ, Hsu HF. Ligand-Based Reactivity of Oxygenation and Alkylation in Cobalt Complexes Binding with (Thiolato)phosphine Derivatives. Inorg Chem 2020; 59:4650-4660. [PMID: 32186861 DOI: 10.1021/acs.inorgchem.9b03740] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In our efforts to understand the nature of metal thiolates, we have explored the chemistry of cobalt ion supported by (thiolato)phosphine ligand derivatives. Herein, we synthesized and characterized a square-planar CoII complex binding with a bidentate (thiolato)phosphine ligand, Co(PS1″)2 (1) ([PS1″]- = [P(Ph)2(C6H3-3-SiMe3-2-S)]-). The complex activates O2 to form a ligand-based oxygenation product, Co(OPS1″)2 (2) ([OPS1″]- = [PO(Ph)2(C6H3-3-SiMe3-2-S)]-). In addition, an octahedral CoIII complex with a tridentate bis(thiolato)phosphine ligand, [NEt4][Co(PS2*)2] (3) ([PS2*]2- = [P(Ph)(C6H3-3-Ph-2-S)2]2-), was obtained. Compound 3 cleaves the C-Cl bond in dichloromethane via an S-based nucleophilic attack to generate a chloromethyl thioether group. Two isomeric products, [Co(PS2*)(PSSCH2Cl*)] (4 and 4') ([PSSCH2Cl*]- = [P(Ph)(C6H3-3-Ph-2-S)(C6H3-3-Ph-2-SCH2Cl)]-), were isolated and fully characterized. Both transformations, oxygenation of a CoII-bound phosphine donor in 1 and alkylation of a CoIII-bound thiolate in 3, were monitored by spectroscopic methods. These reaction products were isolated and fully characterized. Density functional theory (DFT, the B3LYP functional) calculations were performed to understand the electronic structure of 1 as well as the pathway of its transformation to 2.
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Affiliation(s)
- Yi-Ying Wu
- Department of Chemistry, National Cheng Kung University, Tainan 701, Taiwan
| | - Jia-Cheng Hong
- Department of Chemistry, National Cheng Kung University, Tainan 701, Taiwan
| | - Ruei-Fong Tsai
- Department of Chemistry and Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Hung-Ruei Pan
- Department of Chemistry, National Cheng Kung University, Tainan 701, Taiwan
| | - Bo-Hua Huang
- Department of Chemistry, National Cheng Kung University, Tainan 701, Taiwan
| | - Yun-Wei Chiang
- Department of Chemistry and Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Gene-Hsiang Lee
- Department of Chemistry, National Taiwan University, Taipei 106, Taiwan
| | - Mu-Jeng Cheng
- Department of Chemistry, National Cheng Kung University, Tainan 701, Taiwan
| | - Hua-Fen Hsu
- Department of Chemistry, National Cheng Kung University, Tainan 701, Taiwan
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Keegan BC, Ocampo D, Shearer J. pH Dependent Reversible Formation of a Binuclear Ni 2 Metal-Center Within a Peptide Scaffold. INORGANICS 2019; 7:90. [PMID: 38046130 PMCID: PMC10691859 DOI: 10.3390/inorganics7070090] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2023] Open
Abstract
A disulfide-bridged peptide containing two Ni2+ binding sites based on the nickel superoxide dismutase protein, {Ni2(SODmds)}, has been prepared. At physiological pH (7.4) it was found that the metal sites are mononuclear with a square planar NOS2 coordination environment with the two sulfur-based ligands derived from cysteinate residues, the nitrogen ligand derived from the amide backbone and a water ligand. Furthermore, S K-edge X-ray absorption spectroscopy indicated that the two cysteinate sulfur atoms ligated to nickel are each protonated. Elevation of the pH to 9.6 results in the deprotonation of the cysteinate sulfur atoms, and yields a binuclear, cysteinate bridged Ni22+ center with each nickel contained in a distorted square planar geometry. At both pH = 7.4 and 9.6 the nickel sites are moderately air sensitive, yielding intractable oxidation products. However, at pH = 9.6 {Ni2(SODmds)} reacts with O2 at an ~3.5-fold faster rate than at pH = 7.4. Electronic structure calculations indicate the reduced reactivity at pH = 7.4 is a result of a reduction in S(3p) character and deactivation of the nucleophilic frontier molecular orbitals upon cysteinate sulfur protonation.
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Affiliation(s)
- Brenna C. Keegan
- Department of Chemistry, Trinity University, 1 Trinity Place, San Antonio, TX 78212, U.S.A
| | - Daniel Ocampo
- Department of Chemistry, Trinity University, 1 Trinity Place, San Antonio, TX 78212, U.S.A
| | - Jason Shearer
- Department of Chemistry, Trinity University, 1 Trinity Place, San Antonio, TX 78212, U.S.A
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Jiang F, Siegler MA, Bouwman E. Synthesis and characterization of a series of transition metal compounds of thioether and disulfide ligands. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2018.10.047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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7
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Khandelwal S, Zamader A, Nagayach V, Dolui D, Mir AQ, Dutta A. Inclusion of Peripheral Basic Groups Activates Dormant Cobalt-Based Molecular Complexes for Catalytic H2 Evolution in Water. ACS Catal 2019. [DOI: 10.1021/acscatal.8b04640] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Shikha Khandelwal
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Afridi Zamader
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Vivek Nagayach
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Dependu Dolui
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Ab Qayoom Mir
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Arnab Dutta
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
- Center for Sustainable Development, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
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Jiang F, Siegler MA, Bouwman E. The Reactivity of Fe
II
and Co
II
Disulfide Compounds with Dihydrogen Peroxide. Eur J Inorg Chem 2018. [DOI: 10.1002/ejic.201800962] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Feng Jiang
- Leiden Institute of Chemistry Gorlaeus Laboratories Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
| | - Maxime A. Siegler
- Department of Chemistry Gorlaeus Laboratories Johns Hopkins University 3400 N. Charles Street 21218 Baltimore Maryland United States
| | - Elisabeth Bouwman
- Leiden Institute of Chemistry Gorlaeus Laboratories Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
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Synthesis and reactivity of a mononuclear non-haem cobalt(IV)-oxo complex. Nat Commun 2017; 8:14839. [PMID: 28337985 PMCID: PMC5376677 DOI: 10.1038/ncomms14839] [Citation(s) in RCA: 116] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Accepted: 02/03/2017] [Indexed: 12/21/2022] Open
Abstract
Terminal cobalt(IV)-oxo (CoIV-O) species have been implicated as key intermediates in various cobalt-mediated oxidation reactions. Herein we report the photocatalytic generation of a mononuclear non-haem [(13-TMC)CoIV(O)]2+ (2) by irradiating [CoII(13-TMC)(CF3SO3)]+ (1) in the presence of [RuII(bpy)3]2+, Na2S2O8, and water as an oxygen source. The intermediate 2 was also obtained by reacting 1 with an artificial oxidant (that is, iodosylbenzene) and characterized by various spectroscopic techniques. In particular, the resonance Raman spectrum of 2 reveals a diatomic Co-O vibration band at 770 cm-1, which provides the conclusive evidence for the presence of a terminal Co-O bond. In reactivity studies, 2 was shown to be a competent oxidant in an intermetal oxygen atom transfer, C-H bond activation and olefin epoxidation reactions. The present results lend strong credence to the intermediacy of CoIV-O species in cobalt-catalysed oxidation of organic substrates as well as in the catalytic oxidation of water that evolves molecular oxygen.
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Xia Y, Cui W, Liu Z, Zhou L, Cui Y, Kobayashi M, Zhou Z. Construction of a subunit-fusion nitrile hydratase and discovery of an innovative metal ion transfer pattern. Sci Rep 2016; 6:19183. [PMID: 26755342 PMCID: PMC4709657 DOI: 10.1038/srep19183] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2015] [Accepted: 12/07/2015] [Indexed: 01/10/2023] Open
Abstract
Metallochaperones are metal-binding proteins designed to deliver the appropriate metal to a target protein. The metal is usually transferred between different proteins. In this study, we discovered that metal was transferred between the same subunit of a mutant nitrile hydratase (NHase). Various “activator proteins” mediate the trafficking of metal ions into NHases. We constructed fusion NHases by fusing the β- and α-subunits and/or the “activator proteins” of the NHase from Pseudomonas putida. The fusion NHases exhibited higher thermostability and tolerance to high concentrations of the product amide. The mechanism of the cobalt incorporation changed from a self-subunit swapping pattern to an apoprotein-specific molecular chaperone pattern in vivo and a metallochaperone pattern in vitro. Notably, the cobalt transfer occurred between the same α-subunit in the metallochaperone pattern. These results not only demonstrated the superiority of fusion-type NHases, but also revealed an innovative metal ion transfer pattern in metalloprotein biosynthesis.
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Affiliation(s)
- Yuanyuan Xia
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Wenjing Cui
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Zhongmei Liu
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Li Zhou
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Youtian Cui
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Michihiko Kobayashi
- Institute of Applied Biochemistry, and Graduate School of Life and Environmental Sciences, The University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan
| | - Zhemin Zhou
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
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Bresson C, Spezia R, Solari PL, Jankowski CK, Den Auwer C. XAS examination of glutathione–cobalt complexes in solution. J Inorg Biochem 2015; 142:126-31. [DOI: 10.1016/j.jinorgbio.2014.10.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2014] [Revised: 10/17/2014] [Accepted: 10/17/2014] [Indexed: 01/09/2023]
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12
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Renfrew AK, Bryce NS, Hambley TW. Delivery and release of curcumin by a hypoxia-activated cobalt chaperone: a XANES and FLIM study. Chem Sci 2013. [DOI: 10.1039/c3sc51530c] [Citation(s) in RCA: 114] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
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