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Hernandes IS, Da Silva HC, Dos Santos HF, De Almeida WB. Unveiling the Molecular Structure of Antimalarial Drugs Chloroquine and Hydroxychloroquine in Solution through Analysis of 1H NMR Chemical Shifts. J Phys Chem B 2021; 125:3321-3342. [PMID: 33760611 DOI: 10.1021/acs.jpcb.1c00609] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Chloroquine (CQ) and hydroxychloroquine (HCQ) have been standard antimalarial drugs since the early 1950s, and very recently, the possibility of their use for the treatment of COVID-19 patients has been considered. To understand the drug mode of action at the submicroscopic level (atoms and molecules), molecular modeling studies with the aid of computational chemistry methods have been of great help. A fundamental step in such theoretical investigations is the knowledge of the predominant drug molecular structure in solution, which is the real environment for the interaction with biological targets. Our strategy to access this valuable information is to perform density functional theory (DFT) calculations of 1H NMR chemical shifts for several plausible molecular conformers and then find the best match with experimental NMR profile in solution (since it is extremely sensitive to conformational changes). Through this procedure, after optimizing 30 trial distinct molecular structures (ωB97x-D/6-31G(d,p)-PCM level of calculation), which may be considered representative conformations, we concluded that the global minimum (named M24), stabilized by an intramolecular N-H hydrogen bond, is not likely to be observed in water, chloroform, and dimethyl sulfoxide (DMSO) solution. Among fully optimized conformations (named M1 to M30, and MD1 and MD2), we found M12 (having no intramolecular H-bond) as the most probable structure of CQ and HCQ in water solution, which is a good approximate starting geometry in drug-receptor interaction simulations. On the other hand, the preferred CQ and HCQ structure in chloroform (and CQ in DMSO-d6) solution was assigned as M8, showing the solvent effects on conformational preferences. We believe that the analysis of 1H NMR data in solution can establish the connection between the macro level (experimental) and the sub-micro level (theoretical), which is not so apparent to us and appears to be more appropriate than the thermodynamic stability criterion in conformational analysis studies.
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Affiliation(s)
- Isabel S Hernandes
- Laboratório de Química Computacional e Modelagem Molecular (LQC-MM), Departamento de Química Inorgânica, Instituto de Química, Universidade Federal Fluminense (UFF), Outeiro de São João Batista s/n, Campus do Valonguinho, Centro, Niterói 24020-141, Rio de Janeiro, Brazil
| | - Haroldo C Da Silva
- Laboratório de Química Computacional e Modelagem Molecular (LQC-MM), Departamento de Química Inorgânica, Instituto de Química, Universidade Federal Fluminense (UFF), Outeiro de São João Batista s/n, Campus do Valonguinho, Centro, Niterói 24020-141, Rio de Janeiro, Brazil
| | - Hélio F Dos Santos
- Núcleo de Estudos em Química Computacional (NEQC), Departamento de Química, ICE, Universidade Federal de Juiz de Fora (UFJF), Campus Universitário, Martelos, Juiz de Fora 36036-330, Minas Gerais, Brazil
| | - Wagner B De Almeida
- Laboratório de Química Computacional e Modelagem Molecular (LQC-MM), Departamento de Química Inorgânica, Instituto de Química, Universidade Federal Fluminense (UFF), Outeiro de São João Batista s/n, Campus do Valonguinho, Centro, Niterói 24020-141, Rio de Janeiro, Brazil
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Jeremić MS, Radovanović MD, Bisceglie F, Kojić VV, Jelić R, Matović ZD. Rhodium(III) in a cage of the 1,3-propanediamine-N,N,N′-triacetate chelate: X-ray structure, solution equilibria, computational study and biological behavior. Polyhedron 2018. [DOI: 10.1016/j.poly.2018.08.075] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Caneda-Martínez L, Valencia L, Fernández-Pérez I, Regueiro-Figueroa M, Angelovski G, Brandariz I, Esteban-Gómez D, Platas-Iglesias C. Toward inert paramagnetic Ni(ii)-based chemical exchange saturation transfer MRI agents. Dalton Trans 2018; 46:15095-15106. [PMID: 29067395 DOI: 10.1039/c7dt02758c] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The Ni2+ complexes with hexadentate ligands containing two 6-methylpicolinamide groups linked by ethane-1,2-diamine (dedpam) or cyclohexane-1,2-diamine (chxdedpam) spacers were investigated as potential contrast agents in magnetic resonance imaging (MRI). The properties of the complexes were compared to that of the analogues containing 6-methylpicolinate units (dedpa2- and chxdedpa2-). The X-ray structure of the [Ni(dedpam)]2+ complex reveals a six-coordinated metal ion with a distorted octahedral environment. The protonation constants of the dedpa2- and dedpam ligands and the stability constants of their Ni2+ complexes were determined using pH-potentiometry and spectrophotometric titrations (25 °C, 0.15 M NaCl). The [Ni(dedpa)] complex (log KNiL = 20.88(1)) was found to be considerably more stable than the corresponding amide derivative [Ni(dedpam)]2+ (log KNiL = 14.29(2)). However, the amide derivative [Ni(chxdedpam)]2+ was found to be considerably more inert with respect to proton-assisted dissociation than the carboxylate derivative [Ni(chxdedpa)]. A detailed 1H NMR and DFT study was conducted to assign the 1H NMR spectra of the [Ni(chxdedpa)] and [Ni(chxdedpam)]2+ complexes. The observed 1H NMR paramagnetic shifts were found to be dominated by the Fermi contact contribution. The amide resonances of [Ni(chxdedpam)]2+ at 91.5 and 22.2 ppm were found to provide a sizeable chemical exchange saturation transfer effect, paving the way for the development of NiCEST agents based on these rigid non-macrocyclic platforms.
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Affiliation(s)
- Laura Caneda-Martínez
- Universidade da Coruña, Centro de Investigacións Científicas Avanzadas (CICA) and Departamento de Química, Facultade de Ciencias, 15071, A Coruña, Galicia, Spain.
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Jeremić MS, Wadepohl H, Kojić VV, Jakimov DS, Jelić R, Popović S, Matović ZD, Comba P. Synthesis, structural analysis, solution equilibria and biological activity of rhodium(iii) complexes with a quinquedentate polyaminopolycarboxylate. RSC Adv 2017. [DOI: 10.1039/c6ra26199j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Two new Rh(iii)–ed3a complexes [Rh(ed3a)(OH2)]·H2O and Na[Rh(ed3a)Cl]·H2O have shown good antitumor activity, especially against HeLa cell line.
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Affiliation(s)
- Marija S. Jeremić
- University of Kragujevac
- Faculty of Science
- Department of Chemistry
- 34000 Kragujevac
- Serbia
| | - Hubert Wadepohl
- Universität Heidelberg, Anorganisch-Chemisches Institut and Interdisciplinary Center for Scientific Computing (IWR)
- Heidelberg
- Germany
| | - Vesna V. Kojić
- Oncology Institute of Vojvodina
- Faculty of Medicine
- University of Novi Sad
- 21204 Sremska Kamenica
- Serbia
| | - Dimitar S. Jakimov
- Oncology Institute of Vojvodina
- Faculty of Medicine
- University of Novi Sad
- 21204 Sremska Kamenica
- Serbia
| | - Ratomir Jelić
- University of Kragujevac
- Faculty of Medical Sciences
- 34000 Kragujevac
- Serbia
| | - Suzana Popović
- University of Kragujevac
- Faculty of Medical Sciences
- 34000 Kragujevac
- Serbia
| | - Zoran D. Matović
- University of Kragujevac
- Faculty of Science
- Department of Chemistry
- 34000 Kragujevac
- Serbia
| | - Peter Comba
- Universität Heidelberg, Anorganisch-Chemisches Institut and Interdisciplinary Center for Scientific Computing (IWR)
- Heidelberg
- Germany
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Emerson AJ, Hawes CS, Knowles GP, Chaffee AL, Batten SR, Turner DR. Coordination polymers from a flexible alkyldiamine-derived ligand. CrystEngComm 2017. [DOI: 10.1039/c7ce01133d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
A traditionally good chelating motif, propanediamine, has been incorporated into a robust coordination framework with vacant amine sites.
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Elhabiri M, Abada S, Sy M, Nonat A, Choquet P, Esteban-Gómez D, Cassino C, Platas-Iglesias C, Botta M, Charbonnière LJ. Importance of Outer-Sphere and Aggregation Phenomena in the Relaxation Properties of Phosphonated Gadolinium Complexes with Potential Applications as MRI Contrast Agents. Chemistry 2015; 21:6535-46. [DOI: 10.1002/chem.201500155] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2015] [Indexed: 11/10/2022]
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Regueiro-Figueroa M, Lima LMP, Blanco V, Esteban-Gómez D, de Blas A, Rodríguez-Blas T, Delgado R, Platas-Iglesias C. Reasons behind the Relative Abundances of Heptacoordinate Complexes along the Late First-Row Transition Metal Series. Inorg Chem 2014; 53:12859-69. [DOI: 10.1021/ic501869y] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Martín Regueiro-Figueroa
- Departamento
de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira-Rúa da Fraga 10, 15008 A Coruña, Spain
| | - Luís M. P. Lima
- Instituto
de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal
| | - Víctor Blanco
- Departamento
de Química Orgánica, Facultad de Ciencias, Universidad de Granada, Campus Fuentenueva S/N, 18071 Granada, Spain
| | - David Esteban-Gómez
- Departamento
de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira-Rúa da Fraga 10, 15008 A Coruña, Spain
| | - Andrés de Blas
- Departamento
de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira-Rúa da Fraga 10, 15008 A Coruña, Spain
| | - Teresa Rodríguez-Blas
- Departamento
de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira-Rúa da Fraga 10, 15008 A Coruña, Spain
| | - Rita Delgado
- Instituto
de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal
| | - Carlos Platas-Iglesias
- Departamento
de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira-Rúa da Fraga 10, 15008 A Coruña, Spain
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