Antibonding delocalization: geminal interaction of .sigma.-bonds and angle strain

Hyperconjugation in hydrocarbons: Not just a “mild sort of conjugation”

This article emphasizes two underappreciated aspects of hyperconjugation in hydrocarbons, two-way hyperconjugation and hyperconjugation in tight spaces. Nonplanar polyenes [e.g., cyclooctatetraene (D2d), biphenyl (D2), styrene (C1)], the nonplanar rotational transition states (TSs) of planar polyenes (e.g., perpendicular 1,3-butadiene), as well as the larger nonplanar Hückel or Möbius annulenes, are stabilized by effective σ-electron delocalization (involving either the C–C or C–H bonds) via two-way hyperconjugation. The collective consequence of two-way hyperconjugation in molecules can be nearly as stabilizing as π-conjugation effects in planar polyenes. Reexamination of the σ- vs. π-bond strength of ethylene results in surprising counterintuitive insights. Strained rings and cages (e.g., cyclopropane and tetrahedrane derivatives, the cubyl cation, etc.) can foster unexpectedly large hyperconjugation stabilizations due to their highly deformed ring angles. The thermochemical stabilities of these species rely on a fine balance between their opposing destabilizing geometrical features and stabilizing hyperconjugative effects in tight spaces (adjustable via substituent effects). We hope to help dispel chemists’ prejudice in viewing hyperconjugation as merely a “mild” effect with unimportant consequences for interpreting the structures and energies of molecules.

Aziridine alkaloids as potential therapeutic agents

The present review describes research on natural aziridine alkaloids isolated from both terrestrial and marine species, as well as their lipophilic semi-synthetic, and/or synthetic analogs. Over 130 biologically active aziridine-containing compounds demonstrate confirmed pharmacological activity including antitumor, antimicrobial, antibacterial effects. The structures, origin, and biological activities of aziridine alkaloids are reviewed. Consequently this review emphasizes the role of aziridine alkaloids as an important source of drug prototypes and leads for drug discovery.

Structure, Strain, and Degenerate Rearrangement of Tricyclo[2.1.0.0]pentasilane and Related Molecules

We theoretically investigate a highly strained tricyclic silane (tricyclo[2.1.0.0 1,3]pentasilane (4b), an isomer of pentasila[1.1.1]propellane (3b)) composed of three fused three-membered rings. The central ring is distorted. One of the fusion bonds in the central ring is shorter than the normal Si-Si single bond (2.350 A) whereas the other is as long as the fusion bonds in bicyclo[1.1.0]tetrasilane (2b) (2.860 A) and 3b (2.778 A). The tricyclic silane is less strained than the carbon congener and more strained than the isomer 3b. The electron delocalization between one of the fusion bonds and the geminal Si-Si ring bonds elongates the fusion bond and stabilizes the molecules to reduce the strain. The silanes composed of the fused three-membered rings are less strained than the carbon congener. A degenerate rearrangement of a three-membered ring is predicted. The enthalpy of activation of the rearrangement of the distorted central ring is low (7.2 kcal/mol) for 4b, but appreciable (22.3 kcal/mol) for the germanium congener, tricyclo[2.1.0.0(1,3)]pentagermane (4c). We investigate the effects of the substituents on the distortion of the central three-membered ring and the degenerate rearrangement.

Activity difference between alpha-COOH and beta-COOH in N-phosphorylaspartic acids

N-phosphorylamino acids are chemically active species that have many biomimic activities. alpha-COOH in amino acids and peptides behaviors rather differently than beta-COOH in many biochemical processes and takes a more important role in the origin of life. Activity differences between alpha-COOH and beta-COOH in the peptide formation of phosphoryl amino acids are studied by 1D, 2D NMR techniques and by ab initio and density functional theory (DFT) calculations in this paper. Phosphoryl dipeptide is formed directly from phosphoryl aspartic acids without any coupling reagents. Only the alpha-dipeptide ester is observed by 1D (1)H, (13)C, and (31)P NMR and 2D NMR. In the ab initio and DFT calculations, the pentacoordinate phosphorane intermediates containing five-membered rings are predicted to be more favored than those with six-membered rings. Both the experimental results and the theoretical calculations suggest that only the alpha-COOH group is activated by N-phosphorylation in N-phosphorylaspartic acid under mild conditions.

Pentagon stability: cyclic delocalization of lone pairs through sigma conjugation and design of polycyclophosphanes

The orbital-phase theory was applied to propose pentagon stability in a well-defined manner. Cyclic delocalization of the lone pair electrons on the five-membered ring atoms through the vicinal sigma bonds was shown to be favored by the orbital-phase properties. The pentagon stability was found to be outstanding in saturated phosphorus five-membered rings in the puckered conformation, and was substantiated by the negative strain energy of cyclopentaphosphane, P(5)H(5) (3). The relative increments of the remarkable increase in the strain energies of protonation on the different atoms in the most stable conformers supported the significance of the cyclic delocalization of the lone pairs. Pentagon stability led to the design of three novel polycyclic phosphanes, P(12)H(4) (18), P(13)H(3) (19), and P(14)H(2) (20), with low strain energies due to many puckered pentagon units in them. The low stability of the dodecahedron P(20) (22) was suggested by the high strain energy due to its planar pentagon units. The pentagon stability is less significant in the saturated nitrogen ring molecules due to the greater energy gap between the n and sigma orbitals.

Orbital phase control of the preferential branching of chain molecules

The orbital phase theory was applied to the stabilities of the branched isomers (1) of E(4)H(10) (E = C, Si, Ge, Sn) relative to the normal ones (2). The orbital phase prediction was confirmed by ab initio molecular orbital (MO) and density functional theory (DFT) calculations as well as by some experimental results. Further applications to the relative stabilities of other alkane and alkene isomers lead to the preference of the branched to the normal isomers, the neopentane-type to isobutane-type branching, the terminal to inner methyl branching, and the methyl to ethyl inner substitution in the longer alkanes, as well as the preference of isobutene to 2-butene moieties. The preferential stabilization of the branched isomers was shown to be general and controlled by the orbital phase.