Coordination sphere flexibility of active-site models for Fe-only hydrogenase: studies in intra- and intermolecular diatomic ligand exchange

The crystal structure of pentakis(carbonyl)-{μ-[2,3-bis(sulfanyl)propan-1-olato]}-(triphenylphosphane)diiron (Fe–Fe)C26H21Fe2O6PS2

C26H21Fe2O6PS2, monoclinic, P21/c (no. 14), a = 9.0892(6) Å, b = 27.6631(18) Å, c = 11.3409(8) Å, β = 106.409(2)°, V = 2735.4(3) Å3, Z = 4, R gt (F) = 0.0670, wR ref (F 2) = 0.1620, T = 296(2) K.

Computational and Experimental Investigations of the Fe2(μ-S2)/Fe2(μ-S)2 Equilibrium

Density functional theory (DFT) calculations on Fe2S2(CO)6-2n(PMe3)2n for n = 0, 1, and 2 reveal that the most electron-rich derivatives (n = 2) exist as diferrous disulfides lacking an S-S bond. The thermal interconversion of the FeII2(S)2 and FeI2(S2) valence isomers is symmetry-forbidden. Related electron-rich diiron complexes [Fe2S2(CN)2(CO)4]2- of an uncertain structure are implicated in the biosynthesis of [FeFe]-hydrogenases. Several efforts to synthesize electron-rich derivatives of Fe2(μ-S2)(CO)6 (1) are described. First, salts of iron persulfido cyanides [Fe2(μ-S2)(CO)5(CN)]- and [Fe2(μ-S2)(CN)(CO)4(PPh3)]- were prepared by the reactions of NaN(tms)2 with 1 and Fe2(μ-S2)(CO)5(PPh3), respectively. Alternative approaches to electron-rich diiron disulfides targeted Fe2(μ-S2)(CO)4(diphosphine). Whereas the preparation of Fe2(μ-S2)(CO)4(dppbz) was straightforward, that of Fe2(μ-S2)(CO)4(dppv) required an indirect route involving the oxidation of Fe2(μ-SH)2(CO)4(dppv) (dppbz = C6H4-1,2-(PPh2)2, dppv = cis-C2H2(PPh2)2). DFT calculations indicate that the oxidation of Fe2(μ-SH)2(CO)4(dppv) produces singlet diferrous disulfide Fe2(μ-S)2(CO)4(dppv), which is sufficiently long-lived as to be trapped by ethylene. The reaction of 1 and dppv mainly afforded Fe2(μ-SCH=CHPPh2)(μ-SPPh2)(CO)5, implicating a S-centered reaction.

Photodynamics of Asymmetric Di-Iron-Cyano Hydrogenases Examined by Time-Resolved Mid-Infrared Spectroscopy

Two anionic asymmetric Fe-Fe hydrogenase model compounds containing a single cyano (CN) and five carboxyl (CO) ligands, [Et₄N][Fe₂(μ-S₂C₃H₆)(CO)₅(CN)₁] and [Et₄N][Fe₂(μ-S₂C₂H₄)(CO)₅(CN)₁], dissolved in room-temperature acetonitrile, are examined. The molecular asymmetry affects the redox potentials of the central iron atoms, thus changing the photophysics and possible catalytic properties of the compounds. Femtosecond ultraviolet excitation with mid-infrared probe spectroscopy of the model compounds was employed to better understand the ultrafast dynamics of the enzyme-active site. Continuous ultraviolet lamp excitation with Fourier transform infrared (FTIR) spectroscopy was also used to explore stable product formation on the second timescale. For both model compounds, two timescales are observed; a 20-30 ps decay and the formation of a long-lived photoproduct. The picosecond decay is assigned to vibrational cooling and rotational dynamics, while the residual spectra remain for up to 300 ps, suggesting the formation of new photoproducts. Static FTIR spectroscopy yielded a different stable photoproduct than that observed on the ultrafast timescale. Density functional theory calculations simulated photoproducts for CO-loss and CN-loss isomers, and the resulting photoproduct spectra suggest that the picosecond transients arise from a complex mixture of isomerization after CO-loss, while dimerization and formation of a CN-containing Fe-CO-Fe bridged species are also considered.

[FeFe]-Hydrogenases: maturation and reactivity of enzymatic systems and overview of biomimetic models

[FeFe]-hydrogenases recieved increasing interest in the last decades. This review summarises important findings regarding their enzymatic reactivity as well as inorganic models applied as electro- and photochemical catalysts.

Synthetic Metallodithiolato Ligands as Pendant Bases in [FeIFeI], [FeI[Fe(NO)]II], and [(μ-H)FeIIFeII] Complexes

The development of ligands with specific stereo- and electrochemical requirements that are necessary for catalyst design challenges synthetic chemists in academia and industry. The crucial aza-dithiolate linker in the active site of [FeFe]-H₂ase has inspired the development of synthetic analogues that utilize ligands which serve as conventional σ donors with pendant base features for H⁺ binding and delivery. Several MN₂S₂ complexes (M = Ni²⁺, [Fe(NO)]²⁺, [Co(NO)]²⁺, etc.) utilize these cis-dithiolates to bind low valent metals and also demonstrate the useful property of hemilability, i.e., alternate between bi- and monodentate ligation. Herein, synthetic efforts have led to the isolation and characterization of three heterotrimetallics that employ metallodithiolato ligand binding to di-iron scaffolds in three redox levels, (μ-pdt)[Fe(CO)₃]₂, (μ-pdt)[Fe(CO)₃][(Fe(NO))^II(IMe)(CO)]⁺, and (μ-pdt)(μ-H)[Fe^II(CO)₂(PMe₃)]₂⁺ to generate (μ-pdt)[(Fe^I(CO)₃][Fe^I(CO)₂·NiN₂S₂] (1), (μ-pdt)[Fe^I(CO)₃][(Fe(NO))^II(IMe)(CO)]⁺ (2), and (μ-pdt)(μ-H)[Fe^II(CO)₂(PMe₃)][Fe^II(CO)(PMe₃)·NiN₂S₂]⁺ (3) complexes (pdt = 1,3-propanedithiolate, IMe = 1,3-dimethylimidazole-2-ylidene, NiN₂S₂ = [N,N'-bis(2-mercaptidoethyl)-1,4-diazacycloheptane] nickel(II)). These complexes display efficient metallodithiolato binding to the di-iron scaffold with one thiolate-S, which allows the free unbound thiolate to potentially serve as a built-in pendant base to direct proton binding, promoting a possible Fe-H^-···⁺H-S coupling mechanism for the electrocatalytic hydrogen evolution reaction (HER) in the presence of acids. Ligand substitution studies on 1 indicate an associative/dissociative type reaction mechanism for the replacement of the NiN₂S₂ ligand, providing insight into the Fe-S bond strength.

Hydrophilic quaternary ammonium-group-containing [FeFe]H2ase models prepared by quaternization of the pyridyl N atoms in pyridylazadiphosphine- and pyridylmethylazadiphosphine-bridged diiron complexes with various electrophiles

The first aromatic quaternary ammonium-group-containing [FeFe]H₂ase models have been prepared and some of them found to be catalysts for H₂ production under CV conditions.

Ultrafast Photodynamics of Cyano-Functionalized [FeFe] Hydrogenase Model Compounds

[FeFe] hydrogenases are efficient enzymes that produce hydrogen gas under mild conditions. Synthetic model compounds containing all CO or mixed CO/PMe3 ligands were previously studied by us and others with ultrafast ultraviolet or visible pump-infrared probe spectroscopy in an effort to better understand the function and interactions of the active site with light. Studies of anionic species containing cyano groups, which more closely match the biological active site, have been elusive. In this work, two model compounds dissolved in room-temperature acetonitrile solution were examined: [Fe2(μ-S2C3H6)(CO)4(CN)2]2- (1) and [Fe2(μ-S2C2H4)(CO)4(CN)2]2- (2). These species exhibit long-lived transient signals consistent with loss of one CO ligand with potential isomerization of newly formed ground electronic state photoproducts, as previously observed with all-CO and CO/PMe3-containing models. We find no evidence for fast (ca. 150 ps) relaxation seen in the all-CO and CO/PMe3 compounds because of the absence of the metal-to-metal charge transfer band in the cyano-functionalized models. These results indicate that incorporation of cyano ligands may significantly alter the electronic properties and photoproducts produced immediately after photoexcitation, which may influence the catalytic activity of model compounds when attached to photosensitizers.

Intramolecular stabilization of a catalytic [FeFe]-hydrogenase mimic investigated by experiment and theory

The mono-substituted complex [Fe2(CO)5(μ-naphthalene-2-thiolate)2(P(PhOMe-p)3)] was prepared taking after the structural principles from both [NiFe] and [FeFe]-hydrogenase enzymes. Crystal structures are reported for this complex and the all carbonyl analogue. The bridging naphthalene thiolates resemble μ-bridging cysteine amino acids. One of the naphthyl moieties forms π-π stacking interactions with the terminal bulky phosphine ligand in the crystal structure and in calculations. This interaction stabilizes the reduced and protonated forms during electrocatalytic proton reduction in the presence of acetic acid and hinders the rotation of the phosphine ligand. The intramolecular π-π stabilization, the electrochemistry and the mechanism of the hydrogen evolution reaction were investigated using computational approaches.

Structural and Kinetic Studies of Intermediates of a Biomimetic Diiron Proton-Reduction Catalyst

One-electron reduction and subsequent protonation of a biomimetic proton-reduction catalyst [FeFe(μ-pdt)(CO)₆] (pdt = propanedithiolate), 1, were investigated by UV-vis and IR spectroscopy on a nano- to microsecond time scale. The study aimed to provide further insight into the proton-reduction cycle of this [FeFe]-hydrogenase model complex, which with its prototypical alkyldithiolate-bridged diiron core is widely employed as a molecular, precious metal-free catalyst for sustainable H₂ generation. The one-electron-reduced catalyst was obtained transiently by electron transfer from photogenerated [Ru(dmb)₃]⁺ in the absence of proton sources or in the presence of acids (dichloro- or trichloroacetic acid or tosylic acid). The reduced catalyst and its protonation product were observed in real time by UV-vis and IR spectroscopy, leading to their structural characterization and providing kinetic data on the electron and proton transfer reactions. 1 features an intact (μ²,κ²-pdt)(μ-H)Fe₂ core in the reduced, 1^-, and reduced-protonated states, 1H, in contrast to the Fe-S bond cleavage upon the reduction of [FeFe(bdt)(CO)₆], 2, with a benzenedithiolate bridge. The driving-force dependence of the rate constants for the protonation of 1^- (k_pt = 7.0 × 10⁵, 1.3 × 10⁷, and 7.0 × 10⁷ M^-1 s^-1 for the three acids used in this study) suggests a reorganization energy >1 eV and indicates that hydride complex 1H is formed by direct protonation of the Fe-Fe bond. The protonation of 1^- is sufficiently fast even with the weaker acids, which excludes a rate-limiting role in light-driven H₂ formation under typical conditions.

Photochemical Dynamics of a Trimethyl-Phosphine Derivatized [FeFe]-Hydrogenase Model Compound

Though there have been many studies on photosensitizers coupled to model complexes of the [FeFe]-hydrogenases, few have looked at how the models react upon exposure to light. To extract photoreaction information, ultrafast time-resolved UV/visible pump, IR probe spectroscopy was performed on Fe₂(μ-S₂C₂H₄)(CO)₄(PMe₃)₂ (2b) dissolved in heptane and acetonitrile and the photochemical dynamics were determined. Excitation with 532 and 355 nm light produces bleaches and new absorptions that decay to half their original intensity with time constants of 300 ± 120 ps and 380 ± 210 ps in heptane and acetonitrile, respectively. These features persist to the microsecond timescale. The dynamics of 2b are assigned to formation of an initial set of photoproducts, which were a mixture of excited-state tricarbonyl isomers. These isomers decay into another set of long-lived photoproducts in which approximately half the excited-state tricarbonyl isomers recombine with CO to form another complex mixture of tricarbonyl and tetracarbonyl isomers.

Mechanistic Insight into Electrocatalytic H2 Production by [Fe2(CN){μ-CN(Me)2}(μ-CO)(CO)(Cp)2]: Effects of Dithiolate Replacement in [FeFe] Hydrogenase Models

DFT has been used to investigate viable mechanisms of the hydrogen evolution reaction (HER) electrocatalyzed by [Fe₂(CN){μ-CN(Me)₂}(μ-CO)(CO)(Cp)₂] (1) in AcOH. Molecular details underlying the proposed ECEC electrochemical sequence have been studied, and the key functionalities of CN^- and amino-carbyne ligands have been elucidated. After the first reduction, CN^- works as a relay for the first proton from AcOH to the carbyne, with this ligand serving as the main electron acceptor for both reduction steps. After the second reduction, a second protonation occurs at CN^- that forms a Fe(CNH) moiety: i.e., the acidic source for the H₂ generation. The hydride (formally 2e/H⁺), necessary to the heterocoupling with H⁺ is thus provided by the μ-CN(Me)₂ ligand and not by Fe centers, as occurs in typical L₆Fe₂S₂ derivatives modeling the hydrogenase active site. It is remarkable, in this regard, that CN^- plays a role more subtle than that previously expected (increasing electron density at Fe atoms). In addition, the role of AcOH in shuttling protons from CN^- to CN(Me)₂ is highlighted. The incompetence for the HER of the related species [Fe₂{μ-CN(Me)₂}(μ-CO)(CO)₂(Cp)₂]⁺ (2⁺) has been investigated and attributed to the loss of proton responsiveness caused by CN^- replacement with CO. In the context of hydrogenase mimicry, an implication of this study is that the dithiolate strap, normally present in all synthetic models, can be removed from the Fe₂ core without loss of HER, but the redox and acid-base processes underlying turnover switch from a metal-based to a ligand-based chemistry. The versatile nature of the carbyne, once incorporated in the Fe₂ scaffold, could be exploited to develop more active and robust catalysts for the HER.

[FeFe]-Hydrogenase H-Cluster Mimics with Various -S(CH2)nS- Linker Lengths (n = 2-8): A Systematic Study

The effect of the nature of the dithiolato ligand on the physical and electrochemical properties of synthetic H-cluster mimics of the [FeFe]-hydrogenase is still of significant concern. In this report we describe the cyclization of various alkanedithiols to afford cyclic disulfide, tetrasulfide, and hexasulfide compounds. The latter compounds were used as proligands for the synthesis of a series of [FeFe]-hydrogenase H-cluster mimics having the general formulas [Fe₂(CO)₆{μ-S(CH₂)_nS}] (n = 4-8), [Fe₂(CO)₆{μ-S(CH₂)_nS}]₂ (n = 6-8), and [Fe₂(CO)₆{(μ-S(CH₂)_nS)₂}] (n = 6-8). The resulting complexes were characterized by ¹H and ¹³C{¹H} NMR and IR spectroscopic techniques, mass spectrometry, and elemental analysis as well as X-ray analysis. The purpose of this research was to study the influence of the systematic increase of n from 2 to 7 on the redox potentials of the models and the catalytic ability in the presence of acetic acid (AcOH) by applying cyclic voltammetry.

Dynamic Flexibility of Hydrogenase Active Site Models Studied with 2D-IR Spectroscopy

Hydrogenase enzymes enable organisms to use H₂ as an energy source, having evolved extremely efficient biological catalysts for the reversible oxidation of molecular hydrogen. Small-molecule mimics of these enzymes provide both simplified models of the catalysis reactions and potential artificial catalysts that might be used to facilitate a hydrogen economy. We have studied two diiron hydrogenase mimics, μ-pdt-[Fe(CO)₃]₂ and μ-edt-[Fe(CO)₃]₂ (pdt = propanedithiolate, edt = ethanedithiolate), in a series of alkane solvents and have observed significant ultrafast spectral dynamics using two-dimensional infrared (2D-IR) spectroscopy. Since solvent fluctuations in nonpolar alkanes do not lead to substantial electrostatic modulations in a solute's vibrational mode frequencies, we attribute the spectral diffusion dynamics to intramolecular flexibility. The intramolecular origin is supported by the absence of any measurable solvent viscosity dependence, indicating that the frequency fluctuations are not coupled to the solvent motional dynamics. Quantum chemical calculations reveal a pronounced coupling between the low-frequency torsional rotation of the carbonyl ligands and the terminal CO stretching vibrations. The flexibility of the CO ligands has been proposed to play a central role in the catalytic reaction mechanism, and our results highlight that the CO ligands are highly flexible on a picosecond time scale.

Selenium makes the difference: protonation of [FeFe]-hydrogenase mimics with diselenolato ligands

The synthetic models of the active site of an [FeFe]-hydrogenase containing a Sn atom in the bridgehead of the diselenato ligand, namely [Fe₂(CO)₆{μ-(SeCH₂Se)SnMe₂}],3and [Fe₂(CO)₆{μ-(SeCH₂)₂SnMe₂}],4have been synthesized and characterized by spectroscopic methods.