Ab initio studies of the relative energetics of glycine and its zwitterion

Accurate and reliable thermochemistry by data analysis of complex thermochemical networks using Active Thermochemical Tables: the case of glycine thermochemistry

Active Thermochemical Tables (ATcT) were successfully used to resolve the existing inconsistencies related to the thermochemistry of glycine, based on statistically analyzing and solving a thermochemical network that includes >3350 chemical species interconnected by nearly 35 000 thermochemically-relevant determinations from experiment and high-level theory. The current ATcT results for the 298.15 K enthalpies of formation are -394.70 ± 0.55 kJ mol-1 for gas phase glycine, -528.37 ± 0.20 kJ mol-1 for solid α-glycine, -528.05 ± 0.22 kJ mol-1 for β-glycine, -528.64 ± 0.23 kJ mol-1 for γ-glycine, -514.22 ± 0.20 kJ mol-1 for aqueous undissociated glycine, and -470.09 ± 0.20 kJ mol-1 for fully dissociated aqueous glycine at infinite dilution. In addition, a new set of thermophysical properties of gas phase glycine was obtained from a fully corrected nonrigid rotor anharmonic oscillator (NRRAO) partition function, which includes all conformers. Corresponding sets of thermophysical properties of α-, β-, and γ-glycine are also presented.

Nitrogen Isotopic Reduced Partition Function Ratios of Glycine and Serine in Water

The nitrogen isotopic reduced partition function ratio (RPFR) of glycine (Gly) and serine (Ser) in water has been evaluated by a couple of methods. The experimental fact that those amino acids are present in the zwitterionic form in water has been best reproduced when trihydrated Gly and Ser molecules were treated by the discrete microsolvation method coupled with the self-consistent reaction field (SCRF) approach. The RPFR values of Gly and Ser in water at 25 °C are evaluated as 1.11152 and 1.11070, respectively, and the equilibrium constant of the nitrogen isotope exchange reaction between the two amino acids is calculated as 1.0007 ± 0.0008 at 25 °C. Equivalent results may be obtained by the SCRF method for non- and monohydrated molecules in the zwitterionic form.

Galvanic Tongue Stimulation Inhibits Five Basic Tastes Induced by Aqueous Electrolyte Solutions

Galvanic tongue stimulation (GTS) modulates taste sensation. However, the effect of GTS is contingent on the electrode polarity in the proximity of the tongue. If an anodal electrode is attached in the proximity of the tongue, an electrical or metallic taste is elicited. On the other hand, if only cathodal electrode is attached in the proximity of the tongue, the salty taste, which is induced by electrolyte materials, is inhibited. The mechanism of this taste inhibition is not adequately understood. In this study, we aim to demonstrate that the inhibition is cause by ions, which elicit taste and which migrate from the taste sensors on the tongue by GTS. We verified the inhibitory effect of GTS on all five basic tastes induced by electrolyte materials. This technology is effective for virtual reality systems and interfaces to support dietary restrictions. Our findings demonstrate that cathodal-GTS inhibits all the five basic tastes. The results also support our hypothesis that the effects of cathodal-GTS are caused by migrating tasting ions in the mouth.

An atoms-in-molecules study of the genetically-encoded amino acids: I. Effects of conformation and of tautomerization on geometric, atomic, and bond properties

The theory of Atoms-In-Molecules (AIM) is a partitioning of the real space of a molecule into disjoint atomic constituents as determined by the topology of the electron density, rho(r). This theory identifies an atom in a molecule with a quantum mechanical open system and, consequently, all of the atom's properties are unambiguously defined. AIM recovers the basic empirical cornerstone of chemistry: that atoms and functional groups possess characteristic and additive properties that in many cases exhibit a remarkable transferability between different molecules. As a result, the theory enables the theoretical synthesis of a large molecule and the prediction of its properties by joining fragments that are predetermined as open systems. The present article is the first of a series (in preparation) that explore this possibility for polypeptides by determining the transferability of the building blocks: the amino acid residues. Transferability of group properties requires transferability of the electron density rho(r), which in turn requires the transferability of the geometric parameters. This article demonstrates that these parameters are conformation-insensitive for a representative amino acid, leucine, and that the atomic and bond properties exhibit a corresponding transferability. The effects of hydrogen bonding are determined and a set of geometrical conditions for the occurrence of such bonding is identified. The effects of transforming neutral leucine into its zwitter-ionic form on its atomic and bond properties are shown to be localized primarily to the sites of ionization.

First generation and characterization of the enol of glycine, H(2)N--CH=C(OH)(2), in the gas phase

The enol of glycine, H(2)N-CH&dbond;C(OH)(2), is generated in the gas phase by neutralization of the corresponding radical cation, which is available by dissociative electron ionization of isoleucine. Reionization approximately 0.6 micros later shows that the isolated enol (2) exists and does not isomerize to the significantly more stable glycine molecule, H(2)N--CH(2)--COOH (1); hence the intramolecular tautomerization 2-->1 must be associated with high barriers. The neutralization-reionization reactivity of 1(+*) further confirms that neutral glycine has a canonical structure (1) and is not a zwitterion. The unimolecular chemistry of 1(+*) is dominated by C--C bond cleavage to the immonium ion (+)H(2)NCH(2); in sharp contrast, 2(+*) primarily loses H(2)O. The ylide ion (+)H(3)N--CH(*)--COOH, an intermediate in the water loss from 2(+*), is found to readily equilibrate to 2(+*) prior to dissociation. Tautomers 1(+*) and 2(+*) differ in their charge-stripping behavior, with only 2(+*) forming a stable dication. The radical anions 1(-*) and 2(-*), formed by charge reversal of 1(+*) and 2(+*), respectively, dissociate extensively to (mainly) different closed-shell fragment anions. An important channel is H(*) loss; 1(-*) yields the carboxylate ion H(2)N--CH(2)--COO(-) whereas 2(-*) yields the enolate ion H(2)N--CH=C(OH)O(-).

Investigations of gas-phase lithium-peptide adducts: Tandem. mass spectrometry and semiempirical studies

Tandem mass spectrometry using a hybrid mass spectrometer of BEqQ geometry was used to investigate the gas-phase formation of the [An (+) Li - H)(+) ion from lithium-peptide adducts. High resolution mass measurements as well as precursor and product ion scans of five peptides indicate that one source of [An (+) Li - H) arises from [An (+) Li](+). Semiempirical calculations (MNOO) and metastable ion decomposition studies of the peptide Gly-Gly-Gly show that the lithium ion prefers to coordinate to the three internal carbonyls of the neutral molecule to give a species that is energetically more stable than the lithiated zwitterion by 305 kJ/mol. Theoretical and experimental evidence suggest that the monolithiated precursor ion population may be a distribution of structural isomers. (J Am Soc Mass Spectrom 1990, 1, 473-480).

Monte Carlo computer simulation of the aqueous hydration of the glycine zwitterion at 25 degree C

Monte Carlo computer simulation on a dilute aqueous solution of the glycine zwitterion are reported. The results are presented in terms of the Quasi-Component Distribution Functions (QCDF) of Ben Naim and partitioned into atomic and functional group contributions using the Proximity Criterion. The Proximity Criterion analysis has been extended to orientational properties and a new normalization procedure has been introduced for the radial distribution functions obtained by the Proximity Criterion. The solvation environment of the glycine zwitterion is found to contain, on the average, 14.4 water molecules out of which 3.2 belong to the ammonium group, 6.1 to the methylene group and 5.1 to the carboxyl group. The importance of the many-body statistical mechanical approach to hydration is emphasized by our finding that the configuration corresponding to the absolute minimum of the glycine zwitterion-water potential surface was found to have negligible statistical weight in the aqueous simulation.