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Hanessian S. My 50-Plus Years of Academic Research Collaborations with Industry. A Retrospective. J Org Chem 2024; 89:9147-9186. [PMID: 38865159 DOI: 10.1021/acs.joc.4c00652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2024]
Abstract
A retrospective is presented highlighting the synthesis of selected "first-in-kind" natural products, their synthetic analogues, structure elucidations, and rationally designed bioactive synthetic compounds that were accomplished because of collaborations with past and present pharmaceutical and agrochemical companies. Medicinal chemistry projects involving structure-based design exploiting cocrystal structures of small molecules with biologically relevant enzymes, receptors, and bacterial ribosomes with synthetic small molecules leading to marketed products, clinical candidates, and novel drug prototypes were realized in collaboration. Personal reflections, historical insights, behind the scenes stories from various long-term projects are shared in this retrospective article.
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Affiliation(s)
- Stephen Hanessian
- Department of Chemistry, Université de Montréal, P.O. Box 6128, Succ. Centre-ville, Montréal, Québec, Canada H3C 3J7
- Department of Pharmaceutical Sciences, University of California, Irvine, California 91266, United States
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Affiliation(s)
| | - Brian R. James
- Department of Chemistry, University of British Columbia, Vancouver, British Columbia, Canada
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Turner J, Muraoka A, Bedenbaugh M, Childress B, Pernot L, Wiencek M, Peterson YK. The Chemical Relationship Among Beta-Lactam Antibiotics and Potential Impacts on Reactivity and Decomposition. Front Microbiol 2022; 13:807955. [PMID: 35401470 PMCID: PMC8988990 DOI: 10.3389/fmicb.2022.807955] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 02/14/2022] [Indexed: 12/05/2022] Open
Abstract
Beta-lactam antibiotics remain one of the most commonly prescribed drug classes, but they are limited by their propensity to cause hypersensitivity reactions (e.g., from allergy to anaphylaxis) as well as by the emergence of bacteria with a myriad of resistance mechanisms such as β-lactamases. While development efforts continue to focus on overcoming resistance, there are ongoing concerns regarding cross-contamination of β-lactams during manufacturing and compounding of these drugs. Additionally, there is a need to reduce levels of drugs such as β-lactam antibiotics in waste-water to mitigate the risk of environmental exposure. To help address future development of effective remediation chemistries and processes, it is desired to better understand the structural relationship among the most common β-lactams. This study includes the creation of a class-wide structural ordering of the entire β-lactam series, including both United States Food and Drug Association (US-FDA)-approved drugs and experimental therapies. The result is a structural relational map: the “Lactamome,” which positions each substance according to architecture and chemical end-group. We utilized a novel method to compare the structural relationships of β-lactam antibiotics among the radial cladogram and describe the positioning with respect to efficacy, resistance to hydrolysis, reported hypersensitivity, and Woodward height. The resulting classification scheme may help with the development of broad-spectrum treatments that reduce the risk of occupational exposure and negative environmental impacts, assist practitioners with avoiding adverse patient reactions, and help direct future drug research.
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Affiliation(s)
- Jonathan Turner
- College of Medicine, Medical University of South Carolina, Charleston, SC, United States
- College of Pharmacy, Medical University of South Carolina, Charleston, SC, United States
| | - Alyssa Muraoka
- College of Pharmacy, Medical University of South Carolina, Charleston, SC, United States
| | | | - Blaine Childress
- South Carolina Research Authority, Greenville, SC, United States
| | | | | | - Yuri K. Peterson
- College of Pharmacy, Medical University of South Carolina, Charleston, SC, United States
- *Correspondence: Yuri K. Peterson,
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Arribat M, Cavelier F, Rémond E. Phosphorus-containing amino acids with a P–C bond in the side chain or a P–O, P–S or P–N bond: from synthesis to applications. RSC Adv 2020. [DOI: 10.1039/c9ra10917j] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Strategies for the preparation of phosphorus-containing amino acids and their utility in the organic chemistry, physico-chemistry, agrochemistry, and pharmacology fields are reported.
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Affiliation(s)
| | - Florine Cavelier
- Institut des Biomolécules Max Mousseron
- IBMM
- UMR 5247
- CNRS
- Université de Montpellier
| | - Emmanuelle Rémond
- Institut des Biomolécules Max Mousseron
- IBMM
- UMR 5247
- CNRS
- Université de Montpellier
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Brenek SJ, Caron S, Chisowa E, Colon-Cruz R, Delude MP, Drexler MT, Handfield RE, Jones BP, Nadkarni DV, Nelson JD, Olivier M, Weekly RM, Bellinger GCA, Brkic Z, Choi N, Desneves J, Lee MAP, Pearce W, Watson JK. Development of a Second-Generation Process to Antibacterial Candidate Sulopenem. Org Process Res Dev 2012. [DOI: 10.1021/op300130p] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | - G. C. A. Bellinger
- IDT Australia Limited, 45 Wadhurst Drive,
Boronia, Victoria 3155, Australia
| | - Zinka Brkic
- IDT Australia Limited, 45 Wadhurst Drive,
Boronia, Victoria 3155, Australia
| | - Neil Choi
- IDT Australia Limited, 45 Wadhurst Drive,
Boronia, Victoria 3155, Australia
| | - Joe Desneves
- IDT Australia Limited, 45 Wadhurst Drive,
Boronia, Victoria 3155, Australia
| | - Marcia A.-P. Lee
- IDT Australia Limited, 45 Wadhurst Drive,
Boronia, Victoria 3155, Australia
| | - Wayne Pearce
- IDT Australia Limited, 45 Wadhurst Drive,
Boronia, Victoria 3155, Australia
| | - Jessica K. Watson
- IDT Australia Limited, 45 Wadhurst Drive,
Boronia, Victoria 3155, Australia
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Abdou WM. Chemical Reactivity of Alkylidene Phosphoranes and the Relevant Phosphonium Salts Toward Some Carbon-Nitrogen Systems. PHOSPHORUS SULFUR 2010. [DOI: 10.1080/10426500210248] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Wafaa M. Abdou
- a National Research Centre , Dokki, Cairo , 12622 , Egypt
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Kolodiazhnyi OI. Methods of preparation ofC-substituted phosphorus ylides and their application in organic synthesis. RUSSIAN CHEMICAL REVIEWS 2007. [DOI: 10.1070/rc1997v066n03abeh000232] [Citation(s) in RCA: 166] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Abstract
An orally active penem antibiotic, Farom (generic name: faropenem), was designed by the conformational analysis of active and inactive penem derivatives. Faropenem showed potent activity against a wide variety of bacteria including extended-spectrum beta-lactamase (ESBL)-producing ones. The mechanism of the stability against ESBL was elucidated by modeling the Michaelis complex of faropenem and Toho-1, an ESBL. Modeling of a complex of faropenem at the active site of a penicillin-binding protein 2 (PBP2) model suggested the characteristic affinity for faropenem with PBP2 of Escherichia coli. Faropenem has been totally synthesized from (R)-1,3-butanediol. The synthetic intermediate, a 3-hydroxyethyl-4-acetoxyazetidinone derivative, was efficiently prepared by the 2 + 2 coupling of a optically active vinylsulfide derivative and chlorosulfonyl isocyanate, followed by the substitution of the acetoxy group for the thiophenyl group at the C-4 position.
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Affiliation(s)
- M Ishiguro
- Suntory Institute for Bioorganic Research, 1-1-1 Wakayamadai, Shimamoto-cho, Mishima-gun, Osaka 618-8503, Japan
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Ren XF, Konaklieva MI, Shi H, Dickey S, Lim DV, Gonzalez J, Turos E. Studies on Nonconventionally Fused Bicyclic β-Lactams. J Org Chem 1998. [DOI: 10.1021/jo9811219] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xiao-Feng Ren
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, Department of Biology, University of South Florida, Tampa, Florida 33620, Departamento de Quimica Organica e Inorganica, Universidad de Oviedo, 33071-Oviedo, Spain, and Department of Chemistry, University of South Florida, Tampa, Florida 33620
| | - Monika I. Konaklieva
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, Department of Biology, University of South Florida, Tampa, Florida 33620, Departamento de Quimica Organica e Inorganica, Universidad de Oviedo, 33071-Oviedo, Spain, and Department of Chemistry, University of South Florida, Tampa, Florida 33620
| | - Hongchang Shi
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, Department of Biology, University of South Florida, Tampa, Florida 33620, Departamento de Quimica Organica e Inorganica, Universidad de Oviedo, 33071-Oviedo, Spain, and Department of Chemistry, University of South Florida, Tampa, Florida 33620
| | - Sonja Dickey
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, Department of Biology, University of South Florida, Tampa, Florida 33620, Departamento de Quimica Organica e Inorganica, Universidad de Oviedo, 33071-Oviedo, Spain, and Department of Chemistry, University of South Florida, Tampa, Florida 33620
| | - Daniel V. Lim
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, Department of Biology, University of South Florida, Tampa, Florida 33620, Departamento de Quimica Organica e Inorganica, Universidad de Oviedo, 33071-Oviedo, Spain, and Department of Chemistry, University of South Florida, Tampa, Florida 33620
| | - Javier Gonzalez
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, Department of Biology, University of South Florida, Tampa, Florida 33620, Departamento de Quimica Organica e Inorganica, Universidad de Oviedo, 33071-Oviedo, Spain, and Department of Chemistry, University of South Florida, Tampa, Florida 33620
| | - Edward Turos
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, Department of Biology, University of South Florida, Tampa, Florida 33620, Departamento de Quimica Organica e Inorganica, Universidad de Oviedo, 33071-Oviedo, Spain, and Department of Chemistry, University of South Florida, Tampa, Florida 33620
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Konaklieva MI, Shi H, Turos E. Palladium-promoted derivatizations of novel C-fused penem ring systems. Tetrahedron Lett 1997. [DOI: 10.1016/s0040-4039(97)10376-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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13
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Planchenault D, Wisedale R, Gallagher T, Hales NJ. A Direct and Convergent Approach to Penams and Penems. J Org Chem 1997. [DOI: 10.1021/jo962367l] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Synthesis and antibacterial activity of (1′R, 5R, 6R)-2-tert-butyl-6-(1′-hydroxyethyl)penem-3-carboxylic acid. Bioorg Med Chem Lett 1997. [DOI: 10.1016/s0960-894x(97)00070-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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15
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Davies GM, Hitchcock PB, Loakes D, Young DW. Synthesis of reactive γ-lactams related to penicillins and cephalosporins. Tetrahedron Lett 1996. [DOI: 10.1016/0040-4039(96)01135-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Cabri W, Candiani I, Zarini F, Bedeschi A. Zinc halides-mediated nucleophilic attack of thioacid salts in non protic media. A key step in the total synthesis of penems. Tetrahedron Lett 1994. [DOI: 10.1016/s0040-4039(00)76913-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Inhibition of human leukocyte elastase. 5. Inhibition by 6-alkyl substituted penem benzyl esters. Bioorg Med Chem Lett 1993. [DOI: 10.1016/s0960-894x(01)80939-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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18
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Pirotte B, Dive G, Delarge J, Masereel B, Dupont L, Thunus L, Schynts M, Coyette J, Frère JM. Synthèse, étude théorique et évaluation biologique de dérivés du 4-amino-4H-1,2,4-triazole analogues des antibiotiques β-lactamiques. Eur J Med Chem 1992. [DOI: 10.1016/0223-5234(92)90003-j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Wentland MP, Hansen PE, Schow SR, Daum SJ. An efficient method for the synthesis of 4-benzoylthioazetidinones. Tetrahedron Lett 1989. [DOI: 10.1016/s0040-4039(00)70633-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Baldwin JE, Freeman RT, Lowe C, Schofield CJ, Lee E. A γ-lactam analogue of the penems possessing antibacterial activity. Tetrahedron 1989. [DOI: 10.1016/s0040-4020(01)89088-8] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Allen NE, Boyd DB, Campbell JB, Deeter JB, Elzey TK, Foster BJ, Hatfield LD, Hobbs JN, Hornback WJ, Hunden DC, Jones ND, Kinnick MD, Morin JM, Munroe JE, Swartzendruber JK, Vogt DG. Molecular modeling of γ-lactam analogues of β-lactam antibacterial agents: synthesis and biological evaluation of selected penem and carbapenem analoques. Tetrahedron 1989. [DOI: 10.1016/s0040-4020(01)80055-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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22
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Synthesis and biological evaluation of new C (4) heterofunctionalized monocyclic β-lactams derived from penicillin G. Eur J Med Chem 1988. [DOI: 10.1016/0223-5234(88)90100-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Affiliation(s)
- S W McCombie
- Schering-Plough Corporation, Bloomfield, New Jersey 07003
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Baldwin JE, Lowe C, Schofield CJ, Lee E. A γ-lactam analogue of penems possessing antibacterial activity. Tetrahedron Lett 1986. [DOI: 10.1016/s0040-4039(00)84822-4] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Alpegiani M, Bedeschi A, Foglio M, Giudici F, Perrone E. Desulphurative approaches to penem antibiotics. II. 4-acyldithioazetidin-2-ones from penicillin derived sulphenimides, thiolsulphonates and disulphides. Tetrahedron Lett 1983. [DOI: 10.1016/s0040-4039(00)81728-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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28
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Rao VS, Vasudevan TK. Conformation and activity of beta-lactam antibiotics. CRC CRITICAL REVIEWS IN BIOCHEMISTRY 1983; 14:173-206. [PMID: 6354584 DOI: 10.3109/10409238309102793] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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29
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Stereocontrolled syntheses of chiral and racemic key intermediates to thienamycin from d-allo-threonine and trans-crotonic acid. Tetrahedron 1983. [DOI: 10.1016/s0040-4020(01)91966-0] [Citation(s) in RCA: 36] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Ihara M, Nakayama A, Fukumoto K, Kametani T. Synthesis of oxapenem derivatives by novel reductive cyclization. Tetrahedron 1982. [DOI: 10.1016/0040-4020(82)85085-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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31
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Ernest I, Main AJ, Woodward RB. 2-Oxocephems and 2-Acetylpenems - Selective Formation in an IntramolecularWittig Reaction. Helv Chim Acta 1981. [DOI: 10.1002/hlca.19810640507] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Vasudevan TK, Rao VS. Theoretical studies on beta-lactam antibiotics. IV. Conformational analysis of novel beta-lactam antibiotics and the binding specificities of crosslinking enzyme(s) and beta-lactamases. Biopolymers 1981; 20:865-77. [PMID: 6971662 DOI: 10.1002/bip.1981.360200502] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Hirai K, Fujimoto K, Iwano Y, Hiraoka T, Hata T, Tamura C. Synthesis of Δ1-carbapenem derivative by aldol condensation method. Tetrahedron Lett 1981. [DOI: 10.1016/s0040-4039(01)82855-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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4-tetrahydropyranthioazetidinyl phosphoranes: Versatile intermediates in the synthesis of 2-penems. Tetrahedron Lett 1981. [DOI: 10.1016/0040-4039(81)80097-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Lang M, Prasad K, Gosteli J, Woodward RB. The Penems, a New Class of ?-Lactam Antibiotics. 6. Synthesis of 2-alkylthiopenem carboxylic acids. Helv Chim Acta 1980. [DOI: 10.1002/hlca.19800630436] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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