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Kalita P, Medhi B, Singh HK, Bhattacharyya HP, Gupt N, Sarma M. Perturbing π-clouds with Substituents to Study the Effects on Reaction Dynamics of gauche-1,3-Butadiene to Bicyclobutane Electrocyclization. Chemphyschem 2023; 24:e202200727. [PMID: 36281900 DOI: 10.1002/cphc.202200727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Revised: 10/23/2022] [Indexed: 02/03/2023]
Abstract
The conical intersection (CI) governs the ultra-fast relaxation of excited states in a radiationless manner and are observed mainly in photochemical processes. In the current work, we investigated the effects of substituents on the reaction dynamics for the conversion of gauche-1,3-butadiene to bicyclobutane via photochemical electrocyclization. We incorporated both electron withdrawing (-F) and donating (-CH3 ) groups in the conjugated system. In our study, we optimized the minimum energy conical intersection (MECI) geometries using the multi-configurational state-averaged CASSCF approach, whereas, to study the ground state reaction pathways for the substituted derivatives, dispersion corrected, B3LYP-D3 functional was used. The non-adiabatic surface hopping molecular dynamics simulations were performed to observe the behaviour of electronic states involved throughout the photoconversion process. The results obtained from the multi-reference second-order perturbation correction of energy at the XMS-CASPT2 level of theory, topography analysis, and non-adiabatic dynamics suggest that the -CH3 substituted derivatives can undergo faster thermal conversion to the product in the ground state with a smaller activation energy barrier compared to -F substituted derivative. Our study also reveals that the GBUT to BIBUT conversion follows both conrotatory and disrotatory pathways, whereas, on substitution with -F or -CH3 , the conversion proceeds via the conrotatory pathway.
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Affiliation(s)
- Papu Kalita
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam, 781039, Indian
| | - Biman Medhi
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam, 781039, Indian
| | - Haobam Kisan Singh
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam, 781039, Indian
| | | | - Nikhil Gupt
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam, 781039, Indian.,Current Address: Indian Institute of Technology Kanpur, Uttar Pradesh, 208016, Indian
| | - Manabendra Sarma
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam, 781039, Indian
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Kelly CB, Milligan JA, Tilley LJ, Sodano TM. Bicyclobutanes: from curiosities to versatile reagents and covalent warheads. Chem Sci 2022; 13:11721-11737. [PMID: 36320907 PMCID: PMC9580472 DOI: 10.1039/d2sc03948f] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 08/24/2022] [Indexed: 09/16/2023] Open
Abstract
The unique chemistry of small, strained carbocyclic systems has long captivated organic chemists from a theoretical and fundamental standpoint. A resurgence of interest in strained carbocyclic species has been prompted by their potential as bioisosteres, high fraction of sp3 carbons, and limited appearance in the patent literature. Among strained ring systems, bicyclo[1.1.0]butane (BCB) stands apart as the smallest bicyclic carbocycle and is amongst the most strained carbocycles known. Despite the fact that BCBs have been synthesized and studied for well over 50 years, they have long been regarded as laboratory curiosities. However, new approaches for preparing, functionalizing, and using BCBs in "strain-release" transformations have positioned BCBs to be powerful synthetic workhorses. Further, the olefinic character of the bridgehead bond enables BCBs to be elaborated into various other ring systems and function as covalent warheads for bioconjugation. This review will discuss the recent developments in the synthesis and functionalization of BCBs as well as the applications of these strained rings in synthesis and drug discovery. An overview of the properties and the historical context of this interesting structure will be provided.
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Affiliation(s)
- Christopher B Kelly
- Discovery Process Research, Janssen Research & Development LLC 1400 McKean Road, Spring House PA 19477 USA
| | - John A Milligan
- Department of Biological and Chemical Sciences, College of Life Sciences, Thomas Jefferson University 4201 Henry Avenue Philadelphia PA 19144 USA
| | - Leon J Tilley
- Department of Chemistry, Stonehill College 320 Washington Street Easton MA 02357 USA
| | - Taylor M Sodano
- Therapeutics Discovery, Janssen Research & Development LLC 1400 McKean Road, Spring House PA 19477 USA
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Jung M, Lindsay VNG. One-Pot Synthesis of Strain-Release Reagents from Methyl Sulfones. J Am Chem Soc 2022; 144:4764-4769. [DOI: 10.1021/jacs.2c00923] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Myunggi Jung
- Department of Chemistry, North Carolina State University, 2620 Yarbrough Drive, Raleigh, North Carolina 27695, United States
| | - Vincent N. G. Lindsay
- Department of Chemistry, North Carolina State University, 2620 Yarbrough Drive, Raleigh, North Carolina 27695, United States
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Rágyanszki A, Fiser B, Lee-Ruff E, Liebman JF. Photochemical Valence Isomerization to High Energy Products-Bicyclobutanes and Oxabicyclobutanes †. Photochem Photobiol 2021; 97:1353-1364. [PMID: 34145589 DOI: 10.1111/php.13472] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 06/09/2021] [Accepted: 06/16/2021] [Indexed: 11/30/2022]
Abstract
DFT calculations were used to determine the structures and energies of bicyclobutane and oxabicyclobutane as valence isomers derived from electronic excitation of their corresponding precursors, 1,3-butadiene and acrolein, respectively. Proton affinities of these strained compounds were determined and compared with their simple ring components, cyclopropane and ethylene oxide. The basicity as determined from proton affinities showed that bicyclobutane is the most basic saturated hydrocarbon, even more basic than oxabicyclobutane. Strain energies of these valence tautomers were computed which showed oxabicyclobutane to be significantly more strained than bicyclobutane. Qualitative reasons are provided to account for the difference in strain energies.
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Affiliation(s)
- Anita Rágyanszki
- Department of Physics and Astronomy, York University, Toronto, ON, Canada
| | - Béla Fiser
- Institute of Chemistry, University of Miskolc, Miskolc-Egyetemváros, Hungary.,Ferenc Rákóczi II. Transcarpathian Hungarian Institute, Beregszász, Transcarpathia, Ukraine
| | - Edward Lee-Ruff
- Department of Chemistry, York University, Toronto, ON, Canada
| | - Joel F Liebman
- Department of Chemistry and Biochemistry, University of Maryland, Baltimore County (UMBC), Baltimore, MD, USA
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5
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Mignolet B, Curchod BFE, Martínez TJ. Rich Athermal Ground-State Chemistry Triggered by Dynamics through a Conical Intersection. Angew Chem Int Ed Engl 2016; 55:14993-14996. [DOI: 10.1002/anie.201607633] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Revised: 09/13/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Benoit Mignolet
- Department of Chemistry and the PULSE Institute; Stanford University; Stanford CA 94305 USA
- SLAC National Accelerator Laboratory; Menlo Park CA 94025 USA
| | - Basile F. E. Curchod
- Department of Chemistry and the PULSE Institute; Stanford University; Stanford CA 94305 USA
- SLAC National Accelerator Laboratory; Menlo Park CA 94025 USA
| | - Todd J. Martínez
- Department of Chemistry and the PULSE Institute; Stanford University; Stanford CA 94305 USA
- SLAC National Accelerator Laboratory; Menlo Park CA 94025 USA
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Mignolet B, Curchod BFE, Martínez TJ. Rich Athermal Ground-State Chemistry Triggered by Dynamics through a Conical Intersection. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201607633] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Benoit Mignolet
- Department of Chemistry and the PULSE Institute; Stanford University; Stanford CA 94305 USA
- SLAC National Accelerator Laboratory; Menlo Park CA 94025 USA
| | - Basile F. E. Curchod
- Department of Chemistry and the PULSE Institute; Stanford University; Stanford CA 94305 USA
- SLAC National Accelerator Laboratory; Menlo Park CA 94025 USA
| | - Todd J. Martínez
- Department of Chemistry and the PULSE Institute; Stanford University; Stanford CA 94305 USA
- SLAC National Accelerator Laboratory; Menlo Park CA 94025 USA
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Kaczor A, Reva I, Warszycki D, Fausto R. UV-induced cyclization in myrcene isolated in rigid argon environment: FT-IR and DFT study. J Photochem Photobiol A Chem 2011. [DOI: 10.1016/j.jphotochem.2011.02.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Minegishi S, Komatsu K, Kitagawa T. Cyclobutadieneiron Tricarbonyl Annelated with Homoadamantene Frameworks. Organometallics 2011. [DOI: 10.1021/om101054d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shinya Minegishi
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
- CREST, Japan Science and Technology Agency (JST)
| | - Koichi Komatsu
- Department of Environmental and Biological Chemistry, Fukui University of Technology, Gakuen, Fukui 910-8505, Japan
| | - Toshikazu Kitagawa
- CREST, Japan Science and Technology Agency (JST)
- Department of Chemistry for Materials, Graduate School of Engineering, Mie University, Tsu, Mie 514-8507, Japan
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Rossi AR, Wang Y, Wiberg KB. Excited States and Photochemistry of Bicyclo[1.1.0]butane. J Phys Chem A 2009; 113:1686-95. [DOI: 10.1021/jp807407c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Angelo R. Rossi
- Department of Chemistry The City University of New York - York College Jamaica, New York 11451
| | - Yigui Wang
- Department of Chemistry Yale University New Haven, Connecticut 06520-8197
| | - Kenneth B. Wiberg
- Department of Chemistry Yale University New Haven, Connecticut 06520-8197
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Khrapunovich M, Zelenova E, Seu L, Sabo AN, Flaherty A, Merrer DC. Regioselectivity and mechanism of dihalocarbene addition to benzocyclopropene. J Org Chem 2007; 72:7574-80. [PMID: 17824649 DOI: 10.1021/jo071203+] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Dihalocarbenes add regioselectively to aryl-substituted benzocyclopropenes to produce dihalobenzocyclobutenes. The regioselectivity of addition is not due to steric effects but depends on the electronic donor or acceptor ability of the substituent. B3LYP/6-31G* calculations show preferential :CCl2 addition to substituted benzocyclopropene through electrophilic attack on the benzocyclopropene pi-system (Ea = 1.1-2.4 kcal/mol) rather than C-C sigma-bond insertion into the cyclopropenyl moiety (Ea = 5-24 kcal/mol). pi-Addition proceeds regioselectively through a single transition state to xylylene intermediates or directly to benzocyclobutene products.
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Affiliation(s)
- Marina Khrapunovich
- Department of Chemistry, Barnard College, 3009 Broadway, New York, New York 10027, USA
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Bourg JB, Rodriguez A, Scheschkewitz D, Gornitzka H, Bourissou D, Bertrand G. Thermal Valence Isomerization of 2,3-Diborata-1,4-diphosphoniabuta-1,3-dienes to Bicyclo[1.1.0]butanes and Cyclobutane-1,3-diyls. Angew Chem Int Ed Engl 2007; 46:5741-5. [PMID: 17592605 DOI: 10.1002/anie.200701578] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jean-Baptiste Bourg
- UCR-CNRS Joint Research Chemistry Laboratory (UMI 2957), Department of Chemistry, University of California, Riverside, CA 92521-0403, USA
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12
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Bourg JB, Rodriguez A, Scheschkewitz D, Gornitzka H, Bourissou D, Bertrand G. Thermal Valence Isomerization of 2,3-Diborata-1,4-diphosphoniabuta-1,3-dienes to Bicyclo[1.1.0]butanes and Cyclobutane-1,3-diyls. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200701578] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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13
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Davies JE, Gassen HG. Synthetische Genfragmente in der Gentechnik – Die Renaissance der Chemie in der Molekularbiologie. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.19830950104] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Julian E. Davies
- Institut für Organische Chemie und Biochemie der Technischen Hochschule Petersenstraße 22, D‐6100 Darmstadt
| | - Hans Günter Gassen
- Institut für Organische Chemie und Biochemie der Technischen Hochschule Petersenstraße 22, D‐6100 Darmstadt
- Route de Troinex 3, CH‐1227 Carouge/Genève (Schweiz)
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de Meijere A, Kozhushkov SI, Schill H. Three-Membered-Ring-Based Molecular Architectures. Chem Rev 2006; 106:4926-96. [PMID: 17165680 DOI: 10.1021/cr0505369] [Citation(s) in RCA: 122] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Armin de Meijere
- Institut für Organische und Biomolekulare Chemie der Georg-August-Universität Göttingen, Tammannstrasse 2, D-37077 Göttingen, Germany
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Yaylı N, Sivrikaya SÖ, Yaşar A, Üçüncü O, Güleç C, Kolaylı S, Küçük M, Çelik E. Intramolecular 4π photocyclization of chalconoid-like compounds in solution and antimicrobial activities. J Photochem Photobiol A Chem 2005. [DOI: 10.1016/j.jphotochem.2005.03.025] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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20
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Jensen JO. Vibrational frequencies and structural determination of bicyclo[1.1.0]butane. ACTA ACUST UNITED AC 2003. [DOI: 10.1016/s0166-1280(03)00243-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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21
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Quenneville J, Ben-Nun M, Martı́nez TJ. Photochemistry from first principles — advances and future prospects. J Photochem Photobiol A Chem 2001. [DOI: 10.1016/s1010-6030(01)00452-x] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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22
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The general course of reactions and structural correlations in SN chemistry discussed in terms of a carbon and sulfur(IV) equivalence. J Organomet Chem 2001. [DOI: 10.1016/s0022-328x(00)00757-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Nakayama T, Miki S, Hamanoue K. Photophysics and photochemistry of naphthoylnaphthvalene, and photoinduced valence isomerization of highly strained aromatic compounds (Or Quinones) yielding the valene-type isomers as well as related photochromism and photo-electro dualchromism. RESEARCH ON CHEMICAL INTERMEDIATES 2000. [DOI: 10.1163/156856700x00282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Davies JE, Gassen HG. Synthetic Gene Fragments in Genetic Engineering?The Renaissance of Chemistry in Molecular Biology. ACTA ACUST UNITED AC 1983. [DOI: 10.1002/anie.198300131] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Nakamura K, Koda S, Akita K. Molecular Dissociation of 3-Cyclopenten-1-one Photosensitized by Excited Mercury (3P1). BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1978. [DOI: 10.1246/bcsj.51.1665] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Inuzuka K, Becker RS. Theoretical and Experimental Considerations of the Direct Photo-Isomerization and Chemistry of 1,3-Pentadiene. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1971. [DOI: 10.1246/bcsj.44.3323] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Some Aspects of the Quantum Theory of Photochemical Reactivity of Organic Molecules. ADVANCES IN QUANTUM CHEMISTRY 1970. [DOI: 10.1016/s0065-3276(08)60335-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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Yonezawa T, Simizu K, Kato H. Electronic Structures and Reactivities of Aliphatic Polycyclo Compounds. I. Fused Three-membered-ring Compounds. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1968. [DOI: 10.1246/bcsj.41.2336] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Reid ST. The photochemistry of drugs and related substances. FORTSCHRITTE DER ARZNEIMITTELFORSCHUNG. PROGRESS IN DRUG RESEARCH. PROGRES DES RECHERCHES PHARMACEUTIQUES 1968; 11:48-120. [PMID: 4873203 DOI: 10.1007/978-3-0348-7062-7_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Indices de liaison et isom�rie de valence. Theor Chem Acc 1968. [DOI: 10.1007/bf00529041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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The Gas Phase Pyrolyses of Some Small Ring Hydrocarbons. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 1966. [DOI: 10.1016/s0065-3160(08)60354-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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Maximum overlap hybridization in cyclobutane, bicyclobutane and related highly strained systems. ACTA ACUST UNITED AC 1966. [DOI: 10.1007/bf00528480] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Prinzbach H, Hagemann H, Hartenstein JH, Kitzing R. Photochemische Umwandlungen. Zur Photochemie des Cyclohexadiens-(1.3), III: Photoisomerisierung des Cyclohexadien-(1.3)-dicarbonsäure-(1.4)-dimethylesters zu Bicyclo[3.1.0]hexen-Derivaten. ACTA ACUST UNITED AC 1965. [DOI: 10.1002/cber.19650980722] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Haller I, Srinivasan R. Vibrational Spectra and Molecular Structure of Bicyclo[1.1.0]butane. J Chem Phys 1964. [DOI: 10.1063/1.1726346] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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