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Ansari M, Rajaraman G. Comparative oxidative ability of mononuclear and dinuclear high-valent iron-oxo species towards the activation of methane: does the axial/bridge atom modulate the reactivity? Dalton Trans 2023; 52:308-325. [PMID: 36504243 DOI: 10.1039/d2dt02559k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Over the years, mononuclear FeIVO species have been extensively studied, but the presence of dinuclear FeIVO species in soluble methane monooxygenase (sMMO) has inspired the development of biomimic models that could activate inert substrates such as methane. There are some successful attempts; particularly the [(Por)(m-CBA) FeIV(μ-N)FeIV(O)(Por˙+)]- species has been reported to activate methane and yield decent catalytic turnover numbers and therefore regarded as the closest to the sMMO enzyme functional model, as no mononuclear FeIVO analogues could achieve this feat. In this work, we have studied a series of mono and dinuclear models using DFT and ab initio DLPNO-CCSD(T) calculations to probe the importance of nuclearity in enhancing the reactivity. We have probed the catalytic activities of four complexes: [(HO)FeIV(O)(Por)]- (1), [(HO)FeIV(O)(Por˙+)] (2), μ-oxo dinuclear iron species [(Por)(m-CBA)FeIV(μ-O)FeIV(O) (Por˙+)]- (3) and N-bridged dinuclear iron species [(Por)(m-CBA)FeIV(μ-N)FeIV(O)(Por˙+)]- (4) towards the activation of methane. Additionally, calculations were performed on the mononuclear models [(X)FeIV(O)(Por˙+)]n {X = N 4a (n = -2), NH 4b (n = -1) and NH24c (n = 0)} to understand the role of nuclearity in the reactivity. DFT calculations performed on species 1-4 suggest an interesting variation among them, with species 1-3 possessing an intermediate spin (S = 1) as a ground state and species 4 possessing a high-spin (S = 2) as a ground state. Furthermore, the two FeIV centres in species 3 and 4 are antiferromagnetically coupled, yielding a singlet state with a distinct difference in their electronic structure. On the other hand, species 2 exhibits a ferromagnetic coupling between the FeIV and the Por˙+ moiety. Our calculations suggest that the higher barriers for the C-H bond activation of methane and the rebound step for species 1 and 3 are very high in energy, rendering them unreactive towards methane, while species 2 and 4 have lower barriers, suggesting their reactivity towards methane. Studies on the system reveal that model 4a has multiple FeN bonds facilitating greater reactivity, whereas the other two models have longer Fe-N bonds and less radical character with steeper barriers. Strong electronic cooperativity is found to be facilitated by the bridging nitride atom, and this cooperativity is suppressed by substituents such as oxygen, rendering them inactive. Thus, our study unravels that apart from enhancing the nuclearity, bridging atoms that facilitate strong cooperation between the metals are required to activate very inert substrates such as methane, and our results are broadly in agreement with earlier experimental findings.
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Affiliation(s)
- Mursaleem Ansari
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
| | - Gopalan Rajaraman
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
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Visible light generation of high-valent metal-oxo intermediates and mechanistic insights into catalytic oxidations. J Inorg Biochem 2020; 212:111246. [PMID: 33059321 DOI: 10.1016/j.jinorgbio.2020.111246] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 08/07/2020] [Accepted: 08/22/2020] [Indexed: 11/21/2022]
Abstract
High-valent metal-oxo complexes play central roles as active oxygen atom transfer (OAT) agents in many enzymatic and synthetic oxidation catalysis. This review focuses on our recent advances in application of photochemical approaches to probe the oxidizing metal-oxo species with different metals and macrocyclic ligands. Under visible light irradiation, a variety of important metal-oxo species including iron-oxo porphyrins, manganese-oxo porphyrin/corroles, ruthenium-oxo porphyrins, and chromium-oxo salens have been successfully generated. Kinetical studies in real time have provided mechanistic insights as to the reactivity and reaction pathways of the metal-oxo intermediates in their oxidation reactions. In photo-induced ligand cleavage reactions, metals in n+ oxidation state with the oxygen-containing ligands bromate, chlorate, or nitrites were photolyzed. Homolytic cleavage of the O-X bond in the ligand gives (n + 1)+ oxidation state metal-oxo species, and heterolytic cleavage gives (n + 2)+ oxidation state metal-oxo species. In photo-disproportionation reactions, reactive Mn+1-oxo species can be formed by photolysis of μ-oxo dimeric Mn+ complexes with the concomitant formation of Mn-1 products. Importantly, the oxidation of Mn-1 products by molecular oxygen (O2) to regenerate the μ-oxo dimeric Mn+ complexes in photo-disproportionation reactions represents an attractive and green catalytic cycle for the development of photocatalytic aerobic oxidations.
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Monika, Ansari A. Mechanistic insights into the allylic oxidation of aliphatic compounds by tetraamido iron( v) species: A C–H vs. O–H bond activation. NEW J CHEM 2020. [DOI: 10.1039/d0nj03095c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This work is based on a deep insight into a comparative study of C–H vs. O–H bond activation of allylic compound by the high valent iron complex. Our theoretical findings can help to design catalysts with better efficiency for catalytic reactions.
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Affiliation(s)
- Monika
- Department of Chemistry
- Central University of Haryana
- Mahendergarh-123031
- India
| | - Azaj Ansari
- Department of Chemistry
- Central University of Haryana
- Mahendergarh-123031
- India
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4
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Zaitseva SV, Tyulyaeva EY, Simonova OR, Zdanovich SA, Tyurin DV, Koifman OI. Highly reactive μ-carbido diiron tetraphenylporphine oxo-species: chemical generation and the oxidation ability. J COORD CHEM 2018. [DOI: 10.1080/00958972.2018.1506109] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- S. V. Zaitseva
- G. A. Krestov Institute of Solution Chemistry of the Russian Academy of Science, Ivanovo, Russian Federation
| | - E. Yu. Tyulyaeva
- G. A. Krestov Institute of Solution Chemistry of the Russian Academy of Science, Ivanovo, Russian Federation
| | - O. R. Simonova
- G. A. Krestov Institute of Solution Chemistry of the Russian Academy of Science, Ivanovo, Russian Federation
| | - S. A. Zdanovich
- G. A. Krestov Institute of Solution Chemistry of the Russian Academy of Science, Ivanovo, Russian Federation
| | - D. V. Tyurin
- Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
| | - O. I. Koifman
- G. A. Krestov Institute of Solution Chemistry of the Russian Academy of Science, Ivanovo, Russian Federation
- Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
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Lee NF, Patel D, Liu H, Zhang R. Insights from kinetic studies of photo-generated compound II models: Reactivity toward aryl sulfides. J Inorg Biochem 2018; 183:58-65. [PMID: 29550659 DOI: 10.1016/j.jinorgbio.2018.03.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 03/05/2018] [Accepted: 03/08/2018] [Indexed: 10/17/2022]
Abstract
Iron(IV)-oxo porphyrins [FeIV(Por)O] (Por = poprhyrin), commonly called compound II models, were produced in three electron-deficient ligands by visible light irradiation of highly photo-labile porphyrin-iron(III) bromates or chlorates. The kinetics of oxygen transfer atom (OAT) reactions with aryl sulfides by these photo-generated [FeIV(Por)O] (3) were studied in CH3CN solutions. The iron(IV)-oxo porphyrins under study include 5,10,15,20-tetra(2,6-dichlorophenyl)porphyrin-iron(IV)-oxo (3a), 5,10,15,20-tetra(2,6-difluorophenyl)porphyrin-iron(IV)-oxo (3b), and 5,10,15,20-tetra(pentafluorophenyl)porphyrin-iron(IV)-oxo (3c). As expected, complexes 3 were competent oxidants and reacted rapidly with thioanisoles to give the corresponding sulfoxides with minor over-oxidation sulfones. Apparent second-order rate constants determined under pseudo-first-order conditions for sulfide oxidation reactions are (9.8 ± 0.1) × 102-(3.7 ± 0.3) × 101 M-1 s-1, which are 3 to 4 orders of magnitude greater in comparison to those of alkene epoxidations and activated CH bond oxidations by the same oxo species. Conventional Hammett analyses gave non-linear correlations, indicating no significant charge developed at the sulfur during the oxidation process. For a given substrate, the reactivity order for the iron(IV)-oxo species was 3c < 3b < 3a, which is inverted from expectations on the basis of the electron-withdrawing capacity of the porphyrin macrocycles. The absolute rate constants from kinetic studies provided insights into the transient oxidants in catalytic reactions under turnover conditions where actual reactive intermediates are not observable. Our kinetic and catalytic competition results strongly suggest that 3 may undergo a disproportionation reaction to form a higher oxidized iron(IV)-oxo porphyrin radical cations as the true oxidant.
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Affiliation(s)
- Ngo Fung Lee
- Department of Chemistry, Western Kentucky University, 1906 College Heights Blvd #11079, Bowling Green, KY 42101-1079, United States
| | - Dharmesh Patel
- Department of Chemistry, Western Kentucky University, 1906 College Heights Blvd #11079, Bowling Green, KY 42101-1079, United States
| | - Haiyan Liu
- Department of Chemistry, Western Kentucky University, 1906 College Heights Blvd #11079, Bowling Green, KY 42101-1079, United States
| | - Rui Zhang
- Department of Chemistry, Western Kentucky University, 1906 College Heights Blvd #11079, Bowling Green, KY 42101-1079, United States.
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6
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Spin-State-Controlled Photodissociation of Iron(III) Azide to an Iron(V) Nitride Complex. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201707420] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Andris E, Navrátil R, Jašík J, Sabenya G, Costas M, Srnec M, Roithová J. Spin-State-Controlled Photodissociation of Iron(III) Azide to an Iron(V) Nitride Complex. Angew Chem Int Ed Engl 2017; 56:14057-14060. [DOI: 10.1002/anie.201707420] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Indexed: 12/28/2022]
Affiliation(s)
- Erik Andris
- Department of Organic Chemistry; Faculty of Science; Charles University; Hlavova 2030/8 128 43 Prague 2 Czech Republic
| | - Rafael Navrátil
- Department of Organic Chemistry; Faculty of Science; Charles University; Hlavova 2030/8 128 43 Prague 2 Czech Republic
| | - Juraj Jašík
- Department of Organic Chemistry; Faculty of Science; Charles University; Hlavova 2030/8 128 43 Prague 2 Czech Republic
| | - Gerard Sabenya
- Departament de Quimica and Institute of Computational Chemistry and Catalysis (IQCC); University of Girona; Campus Montilivi Girona 17071 Spain
| | - Miquel Costas
- Departament de Quimica and Institute of Computational Chemistry and Catalysis (IQCC); University of Girona; Campus Montilivi Girona 17071 Spain
| | - Martin Srnec
- J. Heyrovsky Institute of Physical Chemistry of the CAS, v. v. i.; Dolejškova 2155/3 18223 Prague 8 Czech Republic
| | - Jana Roithová
- Department of Organic Chemistry; Faculty of Science; Charles University; Hlavova 2030/8 128 43 Prague 2 Czech Republic
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Ghosh A. Electronic Structure of Corrole Derivatives: Insights from Molecular Structures, Spectroscopy, Electrochemistry, and Quantum Chemical Calculations. Chem Rev 2017; 117:3798-3881. [PMID: 28191934 DOI: 10.1021/acs.chemrev.6b00590] [Citation(s) in RCA: 218] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Presented herein is a comprehensive account of the electronic structure of corrole derivatives. Our knowledge in this area derives from a broad range of methods, including UV-vis-NIR absorption and MCD spectroscopies, single-crystal X-ray structure determination, vibrational spectroscopy, NMR and EPR spectroscopies, electrochemistry, X-ray absorption spectroscopy, and quantum chemical calculations, the latter including both density functional theory and ab initio multiconfigurational methods. The review is organized according to the Periodic Table, describing free-base and main-group element corrole derivatives, then transition-metal corroles, and finally f-block element corroles. Like porphyrins, corrole derivatives with a redox-inactive coordinated atom follow the Gouterman four-orbital model. A key difference from porphyrins is the much wider prevalence of noninnocent electronic structures as well as full-fledged corrole•2- radicals among corrole derivatives. The most common orbital pathways mediating ligand noninnocence in transition-metal corroles are the metal(dz2)-corrole("a2u") interaction (most commonly observed in Mn and Fe corroles) and the metal(dx2-y2)-corrole(a2u) interaction in coinage metal corroles. Less commonly encountered is the metal(dπ)-corrole("a1u") interaction, a unique feature of formal d5 metallocorroles. Corrole derivatives exhibit a rich array of optical properties, including substituent-sensitive Soret maxima indicative of ligand noninnocence, strong fluorescence in the case of lighter main-group element complexes, and room-temperature near-IR phosphorescence in the case of several 5d metal complexes. The review concludes with an attempt at identifying gaps in our current knowledge and potential future directions of electronic-structural research on corrole derivatives.
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Affiliation(s)
- Abhik Ghosh
- Department of Chemistry and Center for Theoretical and Computational Chemistry, UiT-The Arctic University of Norway , 9037 Tromsø, Norway
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9
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Kwong KW, Patel D, Malone J, Lee NF, Kash B, Zhang R. An investigation of ligand effects on the visible light-induced formation of porphyrin–iron(iv)-oxo intermediates. NEW J CHEM 2017. [DOI: 10.1039/c7nj03296j] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Depending on the structure of the porphyrin ligands, the visible light photolysis of porphyrin–iron(iii) bromates produced iron(iv)-oxo radical cations or iron(iv)-oxo porphyrins, permitting direct kinetic studies of their oxidation reactions.
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Affiliation(s)
- Ka Wai Kwong
- Department of Chemistry
- Western Kentucky University
- Bowling Green
- USA
| | - Dharmesh Patel
- Department of Chemistry
- Western Kentucky University
- Bowling Green
- USA
| | - Jonathan Malone
- Department of Chemistry
- Western Kentucky University
- Bowling Green
- USA
| | - Ngo Fung Lee
- Department of Chemistry
- Western Kentucky University
- Bowling Green
- USA
| | - Benjamin Kash
- Department of Chemistry
- Western Kentucky University
- Bowling Green
- USA
| | - Rui Zhang
- Department of Chemistry
- Western Kentucky University
- Bowling Green
- USA
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Chen TH, Asiri N, Kwong KW, Malone J, Zhang R. Ligand control in the photochemical generation of high-valent porphyrin-iron-oxo derivatives. Chem Commun (Camb) 2016; 51:9949-52. [PMID: 25999215 DOI: 10.1039/c5cc02852c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Visible-light irradiation of photo-labile bromate porphyrin-iron(III) salts gave iron(IV)-oxo porphyrin radical cations (compound I model) or the neutral iron(IV)-oxo porphyrin (compound II model), depending on the electronic structure of porphyrin ligands.
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Affiliation(s)
- Tse-Hong Chen
- Department of Chemistry, Western Kentucky University, 1906 College Heights Blvd., Bowling Green, Kentucky, USA.
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Ansari A, Rajaraman G. ortho-Hydroxylation of aromatic acids by a non-heme Fe(V)=O species: how important is the ligand design? Phys Chem Chem Phys 2015; 16:14601-13. [PMID: 24812659 DOI: 10.1039/c3cp55430a] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
There is a growing interest in probing the mechanism of catalytic transformations effected by non-heme iron-oxo complexes as these reactions set a platform for understanding the relevant enzymatic reactions. The ortho-hydroxylation of aromatic compounds is one such reaction catalysed by iron-oxo complexes. Experimentally [Fe(II)(BPMEN)(CH3CN)2](2+) (1) and [Fe(II)(TPA)(CH3CN)2](2+) (2) (where TPA = tris(2-pyridylmethyl)amine and BPMEN = N,N′-dimethyl-N,N′-bis(2-pyridylmethyl)ethane-1,2-diamine) complexes containing amino pyridine ligands along with H2O2 are employed to carry out these transformations where complex 1 is found to be more reactive than complex 2. Herein, using density functional methods employing B3LYP and dispersion corrected B3LYP (B3LYP-D) functionals, we have explored the mechanism of this reaction to reason out the importance of ligand design in fine-tuning the reactivity of such catalytic transformations. Dispersion corrected B3LYP is found to be superior to B3LYP in predicting the correct ground state of these species and also yields lower barrier heights than the B3LYP functional. Starting the reaction from the Fe(III)–OOH species, both homolytic and heterolytic cleavage of the O···O bond is explored leading to the formation of the transient Fe(IV)=O and Fe(V)=O species. For both the ligand systems, heterolytic cleavage was energetically preferable and our calculations suggest that both the reactions are catalyzed by an elusive high-valent Fe(V)=O species. The Fe(V)=O species undergoes the reaction via an electrophilic attack of the benzene ring to effect the ortho-hydroxylation reaction. The reactivity pattern observed for 1 and 2 are reflected in the computed barrier heights for the ortho-hydroxylation reaction. Electronic structure analysis reveals that the difference in reactivity between the ligand architectures described in complex 1 and 2 arise due to orientation of the pyridine ring(s) parallel or perpendicular to the Fe(V)=O bond. The parallel orientation of the pyridine ring is found to mix with the (πFe(dyz)–O(py))* orbital of the Fe-oxo bond leading to a reduction in the electrophilicity of the ferryl oxygen atom. Our calculations highlight the importance of ligand design in this chemistry and suggest that this concept can be used to (i) stabilize high-valent intermediates which can be trapped and thoroughly characterized (ii) enhance the reactivity and efficiency of the oxidants by increasing the electrophilicity of the ferryl oxygen containing FeVO species. Our computed results are in general agreement with the experimental results.
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Affiliation(s)
- Azaj Ansari
- Department of Chemistry, Indian Institute of Technology-Bombay, Powai, Mumbai, India.
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Austeria MP, Pancharatna PD, Balakrishnarajan MM. Electronic Origin of Out-of-Plane Distortions in Porphyrins. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402157] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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13
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Meininger DJ, Muzquiz N, Arman HD, Tonzetich ZJ. A convenient procedure for the synthesis of fluoro-iron(III) complexes of common synthetic porphyrinates. J PORPHYR PHTHALOCYA 2014. [DOI: 10.1142/s108842461450014x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
We report here an improved method for the preparation of fluoro-iron(III) porphyrinate complexes. Treatment of [ Fe 2( P )2(μ- O )] (P = tetraphenylporphyrinate {TPP}, tetra-p-tolylporphyrinate {TTP}, or octaethylporphyrinate {OEP}) or [ Fe ( OH )( OH 2)( TMP )] (TMP = tetramesitylporphyrinate) with the commercially available fluorinating agent, Et 3 N ·3 HF , in dichloromethane affords the desired [ FeF ( P )] complexes in a straightforward fashion and in good yield while avoiding the use of aqueous hydrofluoric acid. All fluoro-iron(III) complexes have been completely characterized by a series of different spectroscopic techniques including cyclic voltammetry. Reaction of a representative complex, [ FeF ( OEP )], with various chloride reagents demonstrates that halide exchange with chloride is facile, but only proceeds at an appreciable rate in the presence of proton sources. Unexpectedly, treatment of [ FeF ( OEP )] with NOBF 4 did not to lead formation of an oxidized species, but rather to formation of the { Fe – NO }6 complex, [ Fe ( NO )( OEP )]( BF 4).
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Affiliation(s)
- Daniel J. Meininger
- Department of Chemistry, University of Texas at San Antonio (UTSA), One UTSA Circle, San Antonio, TX 78249, USA
| | - Nicanor Muzquiz
- Department of Chemistry, University of Texas at San Antonio (UTSA), One UTSA Circle, San Antonio, TX 78249, USA
| | - Hadi D. Arman
- Department of Chemistry, University of Texas at San Antonio (UTSA), One UTSA Circle, San Antonio, TX 78249, USA
| | - Zachary J. Tonzetich
- Department of Chemistry, University of Texas at San Antonio (UTSA), One UTSA Circle, San Antonio, TX 78249, USA
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Pinakoulaki E, Daskalakis V, Ohta T, Richter OMH, Budiman K, Kitagawa T, Ludwig B, Varotsis C. The protein effect in the structure of two ferryl-oxo intermediates at the same oxidation level in the heme copper binuclear center of cytochrome c oxidase. J Biol Chem 2013; 288:20261-6. [PMID: 23723073 DOI: 10.1074/jbc.m113.468488] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Identification of the intermediates and determination of their structures in the reduction of dioxygen to water by cytochrome c oxidase (CcO) are particularly important to understanding both O2 activation and proton pumping by the enzyme. In this work, we report the products of the rapid reaction of O2 with the mixed valence form (CuA(2+), heme a(3+), heme a3(2+)-CuB(1+)) of the enzyme. The resonance Raman results show the formation of two ferryl-oxo species with characteristic Fe(IV)=O stretching modes at 790 and 804 cm(-1) at the peroxy oxidation level (PM). Density functional theory calculations show that the protein environment of the proximal H-bonded His-411 determines the strength of the distal Fe(IV)=O bond. In contrast to previous proposals, the PM intermediate is also formed in the reaction of Y167F with O2. These results suggest that in the fully reduced enzyme, the proton pumping ν(Fe(IV)=O) = 804 cm(-1) to ν(Fe(IV)=O) = 790 cm(-1) transition (P→F, where P is peroxy and F is ferryl) is triggered not only by electron transfer from heme a to heme a3 but also by the formation of the H-bonded form of the His-411-Fe(IV)=O conformer in the proximal site of heme a3. The implications of these results with respect to the role of an O=Fe(IV)-His-411-H-bonded form to the ring A propionate of heme a3-Asp-399-H2O site and, thus, to the exit/output proton channel (H2O) pool during the proton pumping P→F transition are discussed. We propose that the environment proximal to the heme a3 controls the spectroscopic properties of the ferryl intermediates in cytochrome oxidases.
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Affiliation(s)
- Eftychia Pinakoulaki
- Department of Chemistry, University of Cyprus, P. O. Box 20537, 1678 Nicosia, Cyprus
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Ansari A, Kaushik A, Rajaraman G. Mechanistic Insights on the ortho-Hydroxylation of Aromatic Compounds by Non-heme Iron Complex: A Computational Case Study on the Comparative Oxidative Ability of Ferric-Hydroperoxo and High-Valent FeIV═O and FeV═O Intermediates. J Am Chem Soc 2013; 135:4235-49. [DOI: 10.1021/ja307077f] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Azaj Ansari
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Abhishek Kaushik
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Gopalan Rajaraman
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
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16
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Larsen R, Gouveia Z, Soares MP, Gozzelino R. Heme cytotoxicity and the pathogenesis of immune-mediated inflammatory diseases. Front Pharmacol 2012; 3:77. [PMID: 22586395 PMCID: PMC3343703 DOI: 10.3389/fphar.2012.00077] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2012] [Accepted: 04/11/2012] [Indexed: 01/01/2023] Open
Abstract
Heme, iron (Fe) protoporphyrin IX, functions as a prosthetic group in a range of hemoproteins essential to support life under aerobic conditions. The Fe contained within the prosthetic heme groups of these hemoproteins can catalyze the production of reactive oxygen species. Presumably for this reason, heme must be sequestered within those hemoproteins, thereby shielding the reactivity of its Fe-heme. However, under pathologic conditions associated with oxidative stress, some hemoproteins can release their prosthetic heme groups. While this heme is not necessarily damaging per se, it becomes highly cytotoxic in the presence of a range of inflammatory mediators such as tumor necrosis factor. This can lead to tissue damage and, as such, exacerbate the pathologic outcome of several immune-mediated inflammatory conditions. Presumably, targeting “free heme” may be used as a therapeutic intervention against these diseases.
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18
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Smith JM, Subedi D. The structure and reactivity of iron nitride complexes. Dalton Trans 2012; 41:1423-9. [DOI: 10.1039/c1dt11674f] [Citation(s) in RCA: 98] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chen H, Lai W, Yao J, Shaik S. Perferryl FeV–Oxo Nonheme Complexes: Do They Have High-Spin or Low-Spin Ground States? J Chem Theory Comput 2011; 7:3049-53. [DOI: 10.1021/ct200614g] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hui Chen
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
| | - Wenzhen Lai
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel
| | - Jiannian Yao
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
| | - Sason Shaik
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel
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Radoń M, Broclawik E, Pierloot K. DFT and Ab Initio Study of Iron-Oxo Porphyrins: May They Have a Low-Lying Iron(V)-Oxo Electromer? J Chem Theory Comput 2011; 7:898-908. [DOI: 10.1021/ct1006168] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University, ul. Ingardena 3, 30-060 Kraków, Poland
| | - Ewa Broclawik
- Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, ul. Niezapominajek 8, 30-239 Kraków, Poland
| | - Kristine Pierloot
- Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Heverlee-Leuven, Belgium
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Chen H, Song J, Lai W, Wu W, Shaik S. Multiple Low-Lying States for Compound I of P450cam and Chloroperoxidase Revealed from Multireference Ab Initio QM/MM Calculations. J Chem Theory Comput 2010; 6:940-53. [DOI: 10.1021/ct9006234] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hui Chen
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel, State Key Laboratory of Physical Chemistry and Chemical Engineering, Xiamen University, 361005 Xiamen, P. R. China
| | - Jinshuai Song
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel, State Key Laboratory of Physical Chemistry and Chemical Engineering, Xiamen University, 361005 Xiamen, P. R. China
| | - Wenzhen Lai
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel, State Key Laboratory of Physical Chemistry and Chemical Engineering, Xiamen University, 361005 Xiamen, P. R. China
| | - Wei Wu
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel, State Key Laboratory of Physical Chemistry and Chemical Engineering, Xiamen University, 361005 Xiamen, P. R. China
| | - Sason Shaik
- Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel, State Key Laboratory of Physical Chemistry and Chemical Engineering, Xiamen University, 361005 Xiamen, P. R. China
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Ikezaki A, Ohgo Y, Nakamura M. NMR studies on the electronic structure of one-electron oxidized complexes of iron(III) porphyrinates. Coord Chem Rev 2009. [DOI: 10.1016/j.ccr.2009.01.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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23
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Harischandra DN, Lowery G, Zhang R, Newcomb M. Production of a putative iron(V)-oxocorrole species by photo-disproportionation of a bis-corrole-diiron(IV)-mu-oxo dimer: implication for a green oxidation catalyst. Org Lett 2009; 11:2089-92. [PMID: 19361171 DOI: 10.1021/ol900480p] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Photodisproportionation of a bis-corrole-diiron(IV)-mu-oxo dimer gave a corrole-iron(III) species and a corrole-iron(V)-oxo species that can be detected and studied in real time. Air oxidation of the corrole-iron(III) species regenerated the bis-corrole-diiron(IV)-mu-oxo dimer, allowing the development of a photocatalytic method for organic oxidations using molecular oxygen and visible light.
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Affiliation(s)
- Dilusha N Harischandra
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607, USA
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Pan Z, Wang Q, Sheng X, Horner JH, Newcomb M. Highly reactive porphyrin-iron-oxo derivatives produced by photolyses of metastable porphyrin-iron(IV) diperchlorates. J Am Chem Soc 2009; 131:2621-8. [PMID: 19193008 PMCID: PMC2664257 DOI: 10.1021/ja807847q] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Photolyses of metastable porphyrin-iron(IV) diperchlorates in laser flash photolysis reactions gave highly reactive transients. The systems studied were 5,10,15,20-tetraphenylporphyrin (TPP), 5,10,15,20-tetramesitylporphyrin (TMP), and 2,3,7,8,12,13,17,18-octaethylporphyrin (OEP). The new species, which decayed within milliseconds in acetonitrile solutions, were shown to react with organic substrates by oxo-transfer reactions involving insertions into carbon-carbon double bonds of alkenes and styrenes or benzylic carbon-hydrogen bonds of arenes. The order of reactivity was OEP > TPP > TMP. Second-order rate constants for reactions with several substrates at 22 degrees C were determined; representative values of rate constants for the TPP derivative were k = 8.6 x 10(5) M(-1) s(-1) for styrene, k = 2.5 x 10(6) M(-1) s(-1) for cyclohexene, and k = 7.7 x 10(4) M(-1) s(-1) for ethylbenzene. These porphyrin-iron-oxo transients reacted 4-5 orders of magnitude faster than the corresponding iron(IV)-oxo porphyrin radical cations with rate constants similar to those of porphyrin-manganese(V)-oxo derivatives. Rate constants for oxidations of benzylic C-H positions of arenes correlated with the C-H bond dissociation energies, and Hammett correlations for reactions with substituted styrenes had rho(+) values ranging from -0.5 to -0.7, reflecting electrophilic character of the oxidants and their high reactivity. On the basis of their unique UV-visible spectra, high reactivities, and oxo-transfer properties, the new transients are tentatively identified as porphyrin-iron(V)-oxo perchlorates, electronic isomers (or valence tautomers) of well-known iron(IV)-oxo porphyrin radical cations.
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Affiliation(s)
- Zhengzheng Pan
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
| | - Qin Wang
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
| | - Xin Sheng
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
| | - John H. Horner
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
| | - Martin Newcomb
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
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Pan Z, Harischandra DN, Newcomb M. Formation of stable and metastable porphyrin- and corrole-iron(IV) complexes and isomerizations to iron(III) macrocycle radical cations. J Inorg Biochem 2009; 103:174-81. [PMID: 19013647 PMCID: PMC2680251 DOI: 10.1016/j.jinorgbio.2008.09.017] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2008] [Revised: 09/23/2008] [Accepted: 09/29/2008] [Indexed: 11/17/2022]
Abstract
Oxidations of three porphyrin-iron(III) complexes (1) with ferric perchlorate, Fe(ClO(4))(3), in acetonitrile solutions at -40 degrees C gave metastable porphyrin-iron(IV) diperchlorate complexes (2) that isomerized to known iron(III) diperchlorate porphyrin radical cations (3) when the solutions were warmed to room temperature. The 5,10,15,20-tetraphenylporphyrin (TPP), 5,10,15,20-tetramesitylporphyrin (TMP), and 2,3,7,8,12,13,17,18-octaethylporphyrin (OEP) systems were studied by UV-visible spectroscopy. Low temperature NMR spectroscopy and effective magnetic moment measurements were possible with the TPP and TMP iron(IV) complexes. Reactions of two corrole systems, 5,10,15-tris(pentafluorophenyl)corrole (TPFC) and 5,15-bis(pentafluorophenyl)-10-p-methoxyphenylcorrole (BPFMC), also were studied. The corrole-iron(IV) chlorides reacted with silver salts to give corrole-iron(IV) complexes. The corrole-iron(IV) nitrate complexes were stable at room temperature. (TPFC)-iron(IV) toslyate, (TPFC)-iron(IV) chlorate, and (BPFMC)-iron(IV) chlorate were metastable and rearranged to their electronic isomers iron(III) corrole radical cations at room temperature. (TPFC)-iron(III) perchlorate corrole radical cation was the only product observed from reaction of the corrole-iron(IV) chloride with silver perchlorate. For the metastable iron(IV) species, the rates of isomerizations to the iron(III) macrocycle radical cation electronic isomers in dilute acetonitrile solutions were relatively insensitive to electron demands of the macrocyclic ligand but reflected the binding strength of the ligand to iron. Kinetic studies at varying temperatures and concentrations indicated that the mechanisms of the isomerization reactions are complex, involving mixed order reactivity.
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Affiliation(s)
- Zhengzheng Pan
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor St., Chicago, IL 60607
| | - Dilusha N. Harischandra
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor St., Chicago, IL 60607
| | - Martin Newcomb
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor St., Chicago, IL 60607
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Tong GSM, Wong ELM, Che CM. Density functional theory study of trans-dioxo complexes of iron, ruthenium, and osmium with saturated amine ligands, trans-[M(O)2(NH3)2(NMeH2)2]2+ (M=Fe, Ru, Os), and detection of [Fe(qpy)(O)2]n+ (n=1, 2) by high-resolution ESI mass spectrometry. Chemistry 2008; 14:5495-506. [PMID: 18478515 DOI: 10.1002/chem.200701563] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Density functional theory (DFT) calculations on trans-dioxo metal complexes containing saturated amine ligands, trans-[M(O)2(NH3)2(NMeH2)2]2+ (M=Fe, Ru, Os), were performed with different types of density functionals (DFs): 1) pure generalized gradient approximations (pure GGAs): PW91, BP86, and OLYP; 2) meta-GGAs: VSXC and HCTH407; and 3) hybrid DFs: B3LYP and PBE1PBE. With pure GGAs and meta-GGAs, a singlet d2 ground state for trans-[Fe(O)2(NH3)2(NMeH2)2]2+ was obtained, but a quintet ground state was predicted by the hybrid DFs B3LYP and PBE1PBE. The lowest transition energies in water were calculated to be at lambda approximately 509 and 515 nm in the respective ground-state geometries from PW91 and B3LYP calculations. The nature of this transition is dependent on the DFs used: a ligand-to-metal charge-transfer (LMCT) transition with PW91, but a pi(Fe-O)-->pi*(Fe-O) transition with B3LYP, in which pi and pi* are the bonding and antibonding combinations between the dpi(Fe) and ppi(O(2-)) orbitals. The FeVI/V reduction potential of trans-[Fe(O)2(NH3)2NMeH2)2]2+ was estimated to be +1.30 V versus NHE based on PW91 results. The [Fe(qpy)(O)2](n+) (qpy=2,2':6',2'':6'',2''':6''',2''''-quinquepyridine; n=1 and 2) ions, tentatively assigned to dioxo iron(V) and dioxo iron(VI), respectively, were detected in the gas phase by high-resolution ESI-MS spectroscopy.
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Affiliation(s)
- Glenna So Ming Tong
- Department of Chemistry and Open Laboratory of Chemical Biology of the Institute of Molecular Technology for Drug Discovery and Synthesis, The University of Hong Kong, Pokfulam Road, Hong Kong
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Zhang R, Newcomb M. Laser flash photolysis generation of high-valent transition metal-oxo species: insights from kinetic studies in real time. Acc Chem Res 2008; 41:468-77. [PMID: 18278877 PMCID: PMC2907137 DOI: 10.1021/ar700175k] [Citation(s) in RCA: 102] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
High-valenttransition metal-oxo species are active oxidizing species in many metal-catalyzed oxidation reactions in both Nature and the laboratory. In homogeneous catalytic oxidations, a transition metal catalyst is oxidized to a metal-oxo species by a sacrificial oxidant, and the activated transition metal-oxo intermediate oxidizes substrates. Mechanistic studies of these oxidizing species can provide insights for understanding commercially important catalytic oxidations and the oxidants in cytochrome P450 enzymes. In many cases, however, the transition metal oxidants are so reactive that they do not accumulate to detectable levels in mixing experiments, which have millisecond mixing times, and successful generation and direct spectroscopic characterization of these highly reactive transients remain a considerable challenge. Our strategy for understanding homogeneous catalysis intermediates employs photochemical generation of the transients with spectroscopic detection on time scales as short as nanoseconds and direct kinetic studies of their reactions with substrates by laser flash photolysis (LFP) methods. This Account describes studies of high-valent manganese- and iron-oxo intermediates. Irradiation of porphyrin-manganese(III) nitrates and chlorates or corrole-manganese(IV) chlorates resulted in homolytic cleavage of the O-X bonds in the ligands, whereas irradiation of porphyrin-manganese(III) perchlorates resulted in heterolytic cleavage of O-Cl bonds to give porphyrin-manganese(V)-oxo cations. Similar reactions of corrole- and porphyrin-iron(IV) complexes gave highly reactive transients that were tentatively identified as macrocyclic ligand-iron(V)-oxo species. Kinetic studies demonstrated high reactivity of the manganese(V)-oxo species, and even higher reactivities of the putative iron(V)-oxo transients. For example, second-order rate constants for oxidations of cis-cyclooctene at room temperature were 6 x 10(3) M(-1) s(-1) for a corrole-iron(V)-oxo species and 1.6 x 10(6) M(-1) s(-1) for the putative tetramesitylporphyrin-iron(V)-oxo perchlorate species. The latter rate constant is 25,000 times larger than that for oxidation of cis-cyclooctene by iron(IV)-oxo perchlorate tetramesitylporphyrin radical cation, which is the thermodynamically favored electronic isomer of the putative iron(V)-oxo species. The LFP-determined rate constants can be used to implicate the transient oxidants in catalytic reactions under turnover conditions where high-valent species are not observable. Similarly, the observed reactivities of the putative porphyrin-iron(V)-oxo species might explain the unusually high reactivity of oxidants produced in the cytochrome P450 enzymes, heme-thiolate enzymes that are capable of oxidizing unactivated carbon-hydrogen bonds in substrates so rapidly that iron-oxo intermediates have not been detected under physiological conditions.
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Affiliation(s)
- Rui Zhang
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor St., Chicago, Illinois, 60607
- Department of Chemistry, Western Kentucky University, 1106 College Heights Blvd., Bowling Green, Kentucky, 42101
| | - Martin Newcomb
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor St., Chicago, Illinois, 60607
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Chiavarino B, Cipollini R, Crestoni ME, Fornarini S, Lanucara F, Lapi A. Probing the Compound I-like reactivity of a bare high-valent oxo iron porphyrin complex: the oxidation of tertiary amines. J Am Chem Soc 2008; 130:3208-17. [PMID: 18278912 DOI: 10.1021/ja077286t] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The mechanisms of oxidative N-dealkylation of amines by heme enzymes including peroxidases and cytochromes P450 and by functional models for the active Compound I species have long been studied. A debated issue has concerned in particular the character of the primary step initiating the oxidation sequence, either a hydrogen atom transfer (HAT) or an electron transfer (ET) event, facing problems such as the possible contribution of multiple oxidants and complex environmental effects. In the present study, an oxo iron(IV) porphyrin radical cation intermediate 1, [(TPFPP)*+ Fe(IV)=O]+ (TPFPP = meso-tetrakis (pentafluorophenyl)porphinato dianion), functional model of Compound I, has been produced as a bare species. The gas-phase reaction with amines (A) studied by ESI-FT-ICR mass spectrometry has revealed for the first time the elementary steps and the ionic intermediates involved in the oxidative activation. Ionic products are formed involving ET (A*+, the amine radical cation), formal hydride transfer (HT) from the amine ([A(-H)]+, an iminium ion), and oxygen atom transfer (OAT) to the amine (A(O), likely a carbinolamine product), whereas an ionic product involving a net initial HAT event is never observed. The reaction appears to be initiated by an ET event for the majority of the tested amines which included tertiary aliphatic and aromatic amines as well as a cyclic and a secondary amine. For a series of N,N-dimethylanilines the reaction efficiency for the ET activated pathways was found to correlate with the ionization energy of the amine. A stepwise pathway accounts for the C-H bond activation resulting in the formal HT product, namely a primary ET process forming A*+, which is deprotonated at the alpha-C-H bond forming an N-methyl-N-arylaminomethyl radical, A(-H)*, readily oxidized to the iminium ion, [A(-H)]+. The kinetic isotope effect (KIE) for proton transfer (PT) increases as the acidity of the amine radical cation increases and the PT reaction to the base, the ferryl group of (TPFPP)Fe(IV)=O, approaches thermoneutrality. The ET reaction displayed by 1 with gaseous N,N-dimethylaniline finds a counterpart in the ET reactivity of FeO+, reportedly a potent oxidant in the gas phase, and with the barrierless ET process for a model (P)*+ Fe(IV)=O species (where P is the porphine dianion) as found by theoretical calculations. Finally, the remarkable OAT reactivity of 1 with C6F5N(CH3)2 may hint to a mechanism along a route of diverse spin multiplicity.
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Affiliation(s)
- Barbara Chiavarino
- Dipartimento di Chimica e Tecnologia delle Sostanze Biologicamente Attive, Università di Roma La Sapienza P.le A. Moro 5, I-00185, Roma, Italy
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Ikezaki A, Tukada H, Nakamura M. Control of electronic structure of a six-coordinate iron(iii) porphyrin radical by means of axial ligands. Chem Commun (Camb) 2008:2257-9. [DOI: 10.1039/b800674a] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Panchmatia PM, Sanyal B, Oppeneer PM. GGA+U modeling of structural, electronic, and magnetic properties of iron porphyrin-type molecules. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.10.030] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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32
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Comba P, Rajaraman G. Epoxidation and 1,2-Dihydroxylation of Alkenes by a Nonheme Iron Model System − DFT Supports the Mechanism Proposed by Experiment. Inorg Chem 2007; 47:78-93. [DOI: 10.1021/ic701161r] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Peter Comba
- Universität Heidelberg, Anorganisch-Chemisches Institut, INF 270, D-69120 Heidelberg, Germany
| | - Gopalan Rajaraman
- Universität Heidelberg, Anorganisch-Chemisches Institut, INF 270, D-69120 Heidelberg, Germany
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Pan Z, Zhang R, Fung LWM, Newcomb M. Photochemical production of a highly reactive porphyrin-iron-oxo species. Inorg Chem 2007; 46:1517-9. [PMID: 17284026 PMCID: PMC2525790 DOI: 10.1021/ic061972w] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Oxidation of 5,10,15,20-tetramesitylporphyrinatoiron(III) perchlorate, (TMP)FeIII(ClO4), with ferric perchlorate in acetonitrile gave a metastable species identified as (TMP)FeIV(ClO4)2 that decayed within seconds to the known isomeric species (TMP*+)FeIII(ClO4)2. Irradiation of the metastable species with 355 nm laser light gave a highly reactive transient that reacts with simple organic reductants (alkenes and arylalkanes) 5 orders of magnitude faster than known Compound I analogues, (TMP*+)FeIV(O)(X-).
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Affiliation(s)
- Zhengzheng Pan
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607, USA
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Decker A, Solomon EI. Comparison of FeIV=O heme and non-heme species: electronic structures, bonding, and reactivities. Angew Chem Int Ed Engl 2006; 44:2252-5. [PMID: 15719352 DOI: 10.1002/anie.200462182] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Andrea Decker
- Department of Chemistry, Stanford University, Stanford, California, 94305, USA
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Ghosh A. Transition metal spin state energetics and noninnocent systems: challenges for DFT in the bioinorganic arena. J Biol Inorg Chem 2006; 11:712-24. [PMID: 16841211 DOI: 10.1007/s00775-006-0135-4] [Citation(s) in RCA: 155] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2006] [Accepted: 06/14/2006] [Indexed: 11/25/2022]
Abstract
Although density functional theory (DFT) provides a generally good description of transition metal systems, we have identified several cases, involving Fe(III) porphyrins and related systems, where common functionals fail to correctly describe the energetics of the different low-lying spin states. The question of metal- versus ligand-centered oxidation in high-valent transition metal complexes is also a challenging one for DFT calculations, as I have tried to illustrate with examples from among porphyrin, corrole, biliverdine, and NO complexes. In a number of cases, I have compared results obtained with different exchange-correlation functionals; in addition, I have added a discussion on the relative performance of pure versus hybrid functionals. Finally, I have offered some thoughts on the role that traditional wavefunction-based ab initio methods, now essentially absent from the bioinorganic arena, might play in the future.
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Affiliation(s)
- Abhik Ghosh
- Department of Chemistry, University of Tromsø, 9037 Tromsø, Norway.
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36
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Newcomb M, Zhang R, Chandrasena REP, Halgrimson JA, Horner JH, Makris TM, Sligar SG. Cytochrome p450 compound I. J Am Chem Soc 2006; 128:4580-1. [PMID: 16594688 PMCID: PMC2536593 DOI: 10.1021/ja060048y] [Citation(s) in RCA: 120] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cytochrome P450 enzymes (P450s) comprise a large class of enzymes that effect numerous oxidations in nature. The active oxidants in P450s are thought to be iron(IV)-oxo porphyrin radical cations termed Compounds I, and these intermediates have been sought since the discovery of P450s 40 years ago. We report formation of the Compound I derivative of a P450 enzyme by laser flash photolysis oxidation of the corresponding Compound II species, an iron(IV)-oxo neutral porphyrin intermediate. The Compound II derivative in turn was produced by oxidation of the P450 with peroxynitrite, which effected a net one-electron, oxo-transfer reaction to the iron(III) atom of the resting enzyme. For the P450 studied in this work, CYP119 from the thermophile Sulfolobus solfactaricus, the P450 Compound II derivative was stable for seconds at ambient temperature, and the Compound I transient decayed with a lifetime of ca. 200 ms.
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Pan Z, Zhang R, Newcomb M. Kinetic studies of reactions of iron(IV)-oxo porphyrin radical cations with organic reductants. J Inorg Biochem 2006; 100:524-32. [PMID: 16500709 DOI: 10.1016/j.jinorgbio.2005.12.022] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2005] [Accepted: 12/29/2005] [Indexed: 11/24/2022]
Abstract
Iron(IV)-oxo porphyrin radical cations are observed intermediates in peroxidase and catalase enzymes, where they are known as Compound I species, and the putative oxidizing species in cytochrome P450 enzymes. In this work, we report kinetic studies of reactions of iron(IV)-oxo porphyrin radical cations that can be compared to reactions of other metal-oxo species. The iron(IV)-oxo radical cations studied were those produced from 5,10,15,20-tetramesitylporphryinato-iron(III) perchlorate (1), 5,10,15,20-tetramesitylporphryinato-iron(III) chloride (2), both in CH(3)CN solvent, and that from 5,10,15,20-tetrakis(pentafluorophenyl)porphyrinato-iron(III) perchlorate (3) in CH(2)Cl(2) solvent. The substrates studied were alkenes and activated hydrocarbons diphenylmethane and ethylbenzene. For a given organic reductant, various iron(IV)-oxo porphyrin radical cations react in a relatively narrow kinetic range; typically the second-order rate constants vary by less than 1 order of magnitude for the oxidants studied here and the related oxidant 5,10,15,20-tetrakis(pentafluorophenyl)porphyrinato-iron(IV)-oxo porphyrin radical cation in CH(3)CN solvent. Charge transfer in the transition states for epoxidation reactions of substituted styrenes by oxidants 1 and 2, rho(+) values of -1.9 and -0.9, respectively, mirrors results found previously for related species. Competition kinetic reactions with a catalytic amount of porphyrin iron(III) species and a terminal oxidant give relative rate constants for oxidations of competing substrates that are somewhat smaller than the ratios of absolute rate constants. Water in CH(3)CN solutions has an apparent modest stabilizing effect on oxidant 1 as indicated in slightly reduced rate constants for oxidation reactions. The iron(IV)-oxo porphyrin radical cations are orders of magnitude less reactive than porphyrin-manganese(V)-oxo cations and a corrole-iron(V)-oxo species. The small environment effects found here suggest that high energy demanding hydrocarbon oxidation reactions catalyzed by cytochrome P450 enzymes might require highly reactive iron(V)-oxo transients as oxidants instead of the more stable, isomeric iron(IV)-oxo porphyrin radical cations.
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Affiliation(s)
- Zhengzheng Pan
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor Street, Chicago, IL 60607, USA
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Konishi K, Ohta T, Oinuma KI, Hashimoto Y, Kitagawa T, Kobayashi M. Discovery of a reaction intermediate of aliphatic aldoxime dehydratase involving heme as an active center. Proc Natl Acad Sci U S A 2006; 103:564-8. [PMID: 16407114 PMCID: PMC1334632 DOI: 10.1073/pnas.0505412103] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Recently, we discovered an intriguing hemoprotein [aliphatic aldoxime dehydratase (OxdA)] that catalyzes the dehydration of aliphatic aldoximes [R-CH=N-OH] to the corresponding nitriles [R-C identical withN] in the industrial Pseudomonas chlororaphis B23 strain. Unlike the utilization of H(2)O(2) or O(2) as a mediator of the catalysis by other heme-containing enzymes (e.g., P450), OxdA is notable for the direct binding of a substrate to the heme iron, experimental evidence of which was obtained here by means of resonance Raman (RR) analysis with an isotope technique. We found that the addition of a large amount of butyraldoxime (final concentration, 200 mM) to ferrous OxdA with a low enzyme concentration (final concentration, 5 muM) yields a long-lived OxdA-substrate complex (named OS-II), whose UV-vis spectrum is different from the corresponding spectra of the OxdA-substrate complex I and CO-bound, ferrous, and ferric forms of OxdA. Intriguingly, the RR analysis demonstrated that OS-II includes a highly oxidized heme with strong bonding between a substrate and the heme iron, as judged from the heme oxidation state marker nu(4) band at 1,379 cm(-1) and the (15)N-isotope-substituted butyraldoxime sensitive band at 857 cm(-1) in the RR spectra. It is noteworthy that OS-II has a highly oxidized heme like the ferryl-oxo heme species (e.g., compound II) formed by some general hemoproteins, although the function of OxdA is different from those (transport of electrons, transport of oxygen, sensing of oxygen or carbon monoxide, and catalysis of redox reactions) of general hemoproteins.
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Affiliation(s)
- Kazunobu Konishi
- Institute of Applied Biochemistry, and Graduate School of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan
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Newcomb M, Chandrasena REP. Highly reactive electrophilic oxidants in cytochrome P450 catalysis. Biochem Biophys Res Commun 2005; 338:394-403. [PMID: 16168951 DOI: 10.1016/j.bbrc.2005.08.208] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2005] [Accepted: 08/24/2005] [Indexed: 11/28/2022]
Abstract
The cytochrome P450 enzymes effect a wide range of oxidations in nature including difficult hydroxylation reactions of unactivated C-H. Most of the high energy reactions of these catalysts appear to involve highly electrophilic active species. Attempts to detect the reactive transients in the enzymes have met with limited success, but evidence has accumulated that two distinct electrophilic oxidants are produced in the P450 enzymes. The consensus electrophilic oxidant termed "iron-oxo" is usually thought to be an analogue of Compound I, an iron(IV)-oxo porphyrin radical cation species, but it is possible that a higher energy electronic isomer of Compound I is required to account for the facility of the C-H oxidation reactions. The second electrophilic oxidant of P450 is speculative; circumstantial evidence suggests that this species is iron-complexed hydrogen peroxide, but this oxidant might be a second spin state of iron-oxo. This overview discusses recent studies directed at detection of the electrophilic oxidants in P450 enzymes and the accumulated evidence for two distinct species.
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Affiliation(s)
- Martin Newcomb
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor St., Chicago, IL 60607, USA.
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Harischandra DN, Zhang R, Newcomb M. Photochemical Generation of a Highly Reactive Iron−Oxo Intermediate. A True Iron(V)−Oxo Species? J Am Chem Soc 2005; 127:13776-7. [PMID: 16201783 DOI: 10.1021/ja0542439] [Citation(s) in RCA: 88] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Laser flash photolysis of 5,10,15-tris(pentafluorophenyl)corrole-iron(IV) chlorate or nitrate, prepared from the corresponding chloride, gave a highly reactive iron-oxo transient identified as an iron(V)-oxo species on the basis of its UV-visible spectrum and high reactivity as well as by analogy to photochemical ligand cleavage reactions of related manganese species. The transient was shown to be an oxo transfer agent in a preparative reaction with cis-cyclooctene. Representative rate constants for oxidation reactions by the new transient at ambient temperature were k = 5900 M-1 s-1 for cyclooctene and k = 570 M-1 s-1 for ethylbenzene. The new transient is more than 6 orders of magnitude more reactive with typical organic reductants than expected for an iron(IV)-oxo corrole radical cation and 100 times more reactive than an analogous positively charged iron(IV)-oxo porphyrin radical cation. Slow electron transfer isomerization of ligand iron(V)-oxo species to iron(IV)-oxo ligand radical cations might be important in reactions of porphyrin-iron catalysts in the laboratory and in nature.
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Affiliation(s)
- Dilusha N Harischandra
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607, USA
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41
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Wang H, Han D, Li N, Li K. Molecular modeling of the intercalation of porphyrins into α-zirconium phosphate. J Mol Model 2005; 12:9-15. [PMID: 16047173 DOI: 10.1007/s00894-005-0279-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2004] [Accepted: 04/15/2005] [Indexed: 11/26/2022]
Abstract
In this work, n-alkylamines (number of carbon atoms ranging from 3 to 10) were investigated in detail by molecular modeling as spacers for intercalating porphyrins into alpha-zirconium phosphate (alpha-ZrP). Pre-intercalated n-alkylamines can form either a flat monolayer or a canted bilayer in the gallery of alpha-ZrP. Based on the interlayer state and intercalative potential of the two modes in alpha-ZrP, it is suggested that the flat monolayer is a better spacer than the bilayer and that n-propylamine (PA) and n-butylamine (BA) in mobile monolayers are the best spacers among the n-alkylamines studied, as is also found experimentally. The intercalation behavior of TMPyP [5,10,15,20-tetrakis (1-methylpyridinium-4-yl) porphyrin] and several other porphyrins was investigated by calculating the intercalative potential. The calculated results showed that the porphyrins were densely packed in a canted monolayer model, and an increase of polarity of the substituent would facilitate the intercalation of the porphyrins.
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Affiliation(s)
- Haiyan Wang
- College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China
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42
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Decker A, Solomon EI. Comparison of FeIV?O Heme and Non-heme Species: Electronic Structures, Bonding, and Reactivities. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200462182] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Nam W, Ryu YO, Song WJ. Oxidizing intermediates in cytochrome P450 model reactions. J Biol Inorg Chem 2004; 9:654-60. [PMID: 15365902 DOI: 10.1007/s00775-004-0577-5] [Citation(s) in RCA: 109] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2004] [Accepted: 06/24/2004] [Indexed: 10/26/2022]
Abstract
Oxoiron(IV) porphyrin pi-cation radicals have been considered as the sole reactive species in the catalytic oxidation of organic substrates by cytochromes P450 and their iron porphyrin models over the past two decades. Recent studies from several laboratories, however, have provided experimental evidence that multiple oxidizing species are involved in the oxygen transfer reactions and that the mechanism of oxygen transfer is much more complex than initially believed. In this Commentary, reactive intermediates that have been shown or proposed to be involved in iron porphyrin complex-catalyzed oxidation reactions are reviewed. Particularly, the current controversy on the oxoiron(IV) porphyrin pi-cation radical as a sole reactive species versus the involvement of multiple oxidizing species in oxygen transfer reactions is discussed.
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Affiliation(s)
- Wonwoo Nam
- Department of Chemistry, Division of Nano Sciences, and Center for Biomimetic Systems, Ewha Womans University, 120-750 Seoul, Korea.
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Ghosh A, Tangen E, Gonzalez E, Que L. Models of High-Valent Intermediates of Non-Heme Diiron Alkane Monooxygenases: Electronic Structure of a Bis(μ-oxo)diron(IV) Complex with Locally Low-Spin Metal Centers. Angew Chem Int Ed Engl 2004; 43:834-8. [PMID: 14767952 DOI: 10.1002/anie.200351768] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Abhik Ghosh
- Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway
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Ghosh A, Tangen E, Gonzalez E, Que L. Models of High-Valent Intermediates of Non-Heme Diiron Alkane Monooxygenases: Electronic Structure of a Bis(μ-oxo)diron(IV) Complex with Locally Low-Spin Metal Centers. Angew Chem Int Ed Engl 2004. [DOI: 10.1002/ange.200351768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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46
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Conradie J, Swarts JC, Ghosh A. Models of High-Valent Heme Protein Intermediates: A Quantum Chemical Study of Iron(IV) Porphyrins with Two Univalent Axial π-Bonding Ligands. J Phys Chem B 2003. [DOI: 10.1021/jp030817p] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jeanet Conradie
- Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of the Free State, 9300 Bloemfontein, Republic of South Africa
| | - Jannie C. Swarts
- Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of the Free State, 9300 Bloemfontein, Republic of South Africa
| | - Abhik Ghosh
- Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of the Free State, 9300 Bloemfontein, Republic of South Africa
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