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Ziegler P, Pelc A, Arthur-Baidoo E, Ameixa J, Ončák M, Denifl S. Negative ion formation and fragmentation upon dissociative electron attachment to the nicotinamide molecule. RSC Adv 2021; 11:32425-32434. [PMID: 35495526 PMCID: PMC9041917 DOI: 10.1039/d1ra06083j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Accepted: 09/13/2021] [Indexed: 12/20/2022] Open
Abstract
Nicotinamide (C6H6N2O) is a biologically relevant molecule. This compound has several important roles related to the anabolic and metabolic processes that take place in living organisms. It is also used as a radiosensitizer in tumor therapy. As a result of the interaction of high-energy radiation with matter, low-energy electrons are also released, which can also interact with other molecules, forming several types of ions. In the present investigation, dissociative electron attachment to C6H6N2O has been studied in a crossed electron-molecular beams experiment in the electron energy range of about 0-15 eV. In the experiment, six anionic species were detected: C6H5N2O-, C5H4N-, NCO-, O-/NH2 -, and CN-, with NCO- being the most prominent anion. We also provide detailed computational results regarding the energetic thresholds and pathways of the respective dissociative electron attachment (DEA) channels. The experimental results are compared with the theoretical ones and on this basis, the possible DEA reactions for the formation of anions at a given resonance energy were assigned as well as the generation of neutrals fragments such as pyridine and its several derivatives and radicals are predicted. The pyridine ring seems to stay intact during the DEA process.
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Affiliation(s)
- Patrick Ziegler
- Institute for Ion Physics and Applied Physics, University of Innsbruck Technikerstrasse 25 6020 Innsbruck Austria
| | - Andrzej Pelc
- Maria Curie-Skłodowska University, Department of Biophysics, Mass Spectrometry Laboratory Pl. M. C.-Skłodowskiej 1 20-031 Lublin Poland
| | - Eugene Arthur-Baidoo
- Institute for Ion Physics and Applied Physics, University of Innsbruck Technikerstrasse 25 6020 Innsbruck Austria
| | - Joao Ameixa
- Institute for Ion Physics and Applied Physics, University of Innsbruck Technikerstrasse 25 6020 Innsbruck Austria
- Centre of Physics and Technological Research, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa 2829-516 Caparica Portugal
| | - Milan Ončák
- Institute for Ion Physics and Applied Physics, University of Innsbruck Technikerstrasse 25 6020 Innsbruck Austria
| | - Stephan Denifl
- Institute for Ion Physics and Applied Physics, University of Innsbruck Technikerstrasse 25 6020 Innsbruck Austria
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Xuan CJ, Wang XD, Xia L, Wu B, Li H, Tian SX. Dissociative Electron Attachment to 1,2-Dichlorobenzene using Mass Spectrometry with Phosphor Screen. CHINESE J CHEM PHYS 2014. [DOI: 10.1063/1674-0068/27/06/628-630] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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Modelli A, Bolognesi P, Avaldi L. Temporary anion states of pyrimidine and halopyrimidines. J Phys Chem A 2011; 115:10775-82. [PMID: 21875136 DOI: 10.1021/jp206559d] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The empty-level electronic structures of pyrimidine and its 2-chloro, 2-bromo, and 5-bromo derivatives have been studied with electron transmission spectroscopy (ETS) and dissociative electron attachment spectroscopy (DEAS) in the 0-5 eV energy range. The spectral features were assigned to the corresponding anion states with the support of theoretical calculations at the ab initio and density functional theory levels. The empty orbital energies obtained by simple Koopmans' theorem calculations, scaled with empirical equations, quantitatively reproduced the energies of vertical electron attachment to π* and σ* empty orbitals measured in the ET spectra and predicted vertical electron affinities close to zero for the three halo derivatives. The total anion currents of the halo derivatives, measured at the walls of the collision chamber as a function of the impact electron energy, presented intense maxima below 0.5 eV. The mass-selected spectra showed that, in this energy, range the total anion current is essentially due to halide fragment anions. The DEA cross sections of the bromo derivatives were found to be about six times larger than that of the chloro derivative. The absolute cross sections at incident electron energies close to zero were evaluated to be 10(-16)-10(-15) cm(2).
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Affiliation(s)
- Alberto Modelli
- Dipartimento di Chimica G. Ciamician, Università di Bologna, via Selmi 2, 40126 Bologna, Italy.
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Aflatooni K, Gallup GA, Burrow PD. Dissociative electron attachment in nonplanar chlorocarbons with pi*/sigma*-coupled molecular orbitals. J Chem Phys 2010; 132:094306. [PMID: 20210397 DOI: 10.1063/1.3319751] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Total absolute cross sections for the dissociative electron attachment (DEA) process are reported for a series of nonplanar ethylenic and phenylic compounds monosubstituted with (CH(2))(n)Cl groups, where n=1-4. Coupling between the local pi* molecular orbitals provided by the unsaturated moieties and the sigma* (C-Cl) orbital is thus examined as a function of the separation of these groups. In particular, the coupling is viewed from the perspective of the interacting temporary negative ions formed by short lived occupation of these orbitals and their decay into the DEA channel. A theoretical treatment of "remote" bond breaking, presented elsewhere, satisfactorily accounts for DEA in the chloroethylenic compounds presented here and emphasizes not only the delocalization of the coupled anionic wave functions but the importance of their relative phases. The dependence of the cross sections on the vertical attachment energies, measured by electron transmission spectroscopy, is also explored and compared to that found previously in chlorinated alkanes.
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Affiliation(s)
- K Aflatooni
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Lincoln, Nebraska 68588-0111, USA
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Modelli A, Jones D. Empty level structure and dissociative electron attachment cross sections in bromo and chloro dihaloalkanes. J Phys Chem A 2009; 113:7795-801. [PMID: 19518058 DOI: 10.1021/jp903507j] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The energies of electron attachment associated with temporary occupation of the C-Br and/or C-Cl virtual sigma* orbitals of dichloro, bromochloro, and dibromo alkanes are measured in the gas phase with electron transmission spectroscopy (ETS). The corresponding orbital energies of the neutral molecules, supplied by HF/6-31G(d)//MP2/6-31G(d) calculations and scaled using an empirically calibrated linear equation, are compared with the experimental vertical attachment energies (VAEs). The largest energy splittings between the first two sigma* anion states are found in the methane derivatives, but two distinct resonances are also observed in the bromochloro and dibromo ethane derivatives. The temporary anions observed in ETS may dissociate, producing Br(-) and Cl(-) negative fragments with widely varying cross sections over the dihaloalkanes studied. The absolute total dissociative electron attachment (DEA) cross sections are evaluated, and their peak values are compared with the corresponding VAEs. In the mixed bromochloro alkanes, the relative intensities of the Br(-) and Cl(-) anion currents detected with a mass filter are also evaluated.
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Affiliation(s)
- Alberto Modelli
- Dipartimento di Chimica G. Ciamician, Università di Bologna, via Selmi 2, 40126 Bologna, Italy.
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Puiatti M, Vera DMA, Pierini AB. In search for an optimal methodology to calculate the valence electron affinities of temporary anions. Phys Chem Chem Phys 2009; 11:9013-24. [DOI: 10.1039/b908870a] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Puiatti M, Vera DMA, Pierini AB. Species with negative electron affinity and standard DFT methods. Finding the valence anions. Phys Chem Chem Phys 2008; 10:1394-9. [PMID: 18309394 DOI: 10.1039/b716625g] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recently, we have shown that traditional bound-electron DFT models are reliable enough to reproduce negative electron affinities (EA) within a few meV, as long as the valence anion state is found, but they seem to fail in predicting the lowest EA when the ground anion state obtained is non-valence, which holds the extra electron in a diffuse orbital around the molecule; here we propose an alternative approach for finding the valence anion state, based on the stabilization exerted by a polar solvent; the methodology yields correct EA values (i.e. beyond the Koopman's theorem approximation) by gradually decreasing the dielectric constant of the medium.
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Affiliation(s)
- Marcelo Puiatti
- INFIQC, Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria, 5000 Córdoba, Argentina
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Modelli A, Jones D. Temporary Anion States and Dissociative Electron Attachment in Diphenyl Disulfide. J Phys Chem A 2006; 110:10219-24. [PMID: 16928111 DOI: 10.1021/jp0628683] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The temporary anion states of gas-phase diphenyl disulfide are characterized by means of electron transmission (ET) and dissociative electron attachment (DEA) spectroscopies. The measured energies of vertical electron attachment are compared to the virtual orbital energies of the neutral state molecule supplied by MP2 and B3LYP calculations with the 6-31G basis set. The calculated energies, scaled with empirical equations, reproduce satisfactorily the attachment energies measured in the ET spectrum. The first anion state of diphenyl disulfide is stable, thus escaping detection in ETS. The vertical and adiabatic electron affinities, evaluated with B3LYP/6-31+G calculations as the energy difference between the neutral and anion states, are predicted to be 0.37 and 1.38 eV, respectively. The anion current displayed in the DEA spectrum has a sharp and intense peak at zero energy, essentially due to the C6H5S- negative fragment. In agreement, according to the calculations, the localization properties of the first anion state are strongly S-S antibonding, and the energetic requirement for its dissociation along the S-S bond is fulfilled even at zero energy.
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Affiliation(s)
- Alberto Modelli
- Dipartimento di Chimica "G. Ciamician", Università di Bologna, via Selmi 2, 40126 Bologna, Italy.
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Onanong S, Burrow PD, Comfort SD, Shea PJ. Electron Capture Detector Response and Dissociative Electron Attachment Cross Sections in Chloroalkanes and Chloroalkenes. J Phys Chem A 2006; 110:4363-8. [PMID: 16571039 DOI: 10.1021/jp058293b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Electron capture detectors (ECDs) are widely used in gas chromatography to detect electronegative compounds. In this work, we examine the connections between the ECD response and the cross sections for dissociative electron attachment (DEA) determined from low energy electron beam studies in the chloroalkane family, stressing in particular the role of temporary anion state energies. We show that attachment rate coefficients computed from these cross sections are well correlated with ECD response, and that the latter decreases exponentially with increasing energies of the lowest anion states. ECD measurements are also carried out in monochloroalkanes substituted with unsaturated ethenyl and phenyl moieties, and the response is shown to depend strongly on the mixing between the unsaturated pi* and the C-Cl sigma* temporary anions as exhibited by the vertical attachment energies (VAEs) of these states. The results show good correlations between the chloroalkene and phenyl chloride ECD responses and the VAEs for the mixed states.
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Affiliation(s)
- Sathaporn Onanong
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, Nebraska 68583, USA
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Modelli A. Empty Level Structure and Dissociative Electron Attachment Cross Section in (Bromoalkyl)benzenes. J Phys Chem A 2005; 109:6193-9. [PMID: 16833959 DOI: 10.1021/jp051991b] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The gas-phase electron transmission (ET) and dissociative electron attachment (DEA) spectra are reported for the series of (bromoalkyl)benzenes C6H5(CH2)nBr (n = 0-3), where the bromine atom is directly bonded to a benzene ring or separated from it by 1-3 CH2 groups, and the dihalo derivative 1-Br-4-Cl-benzene. The relative DEA cross sections (essentially due to the Br- fragment) are reported, and the absolute cross sections are also evaluated. HF/6-31G and B3LYP/6-31G* calculations are employed to evaluate the virtual orbital energies (VOEs) for the optimized geometries of the neutral state molecules. The pi* VOEs, scaled with empirical equations, satisfactorily reproduce the corresponding experimental vertical electron attachment energies (VAEs). According to the calculated localization properties, the LUMO (as well as the singly occupied MO of the lowest lying anion state) of C6H5(CH2)3Br is largely localized on both the benzene ring and the C-Br bond, despite only a small pi*/sigma*C-Br interaction and in contrast to the chlorine analogue where the LUMO is predicted to possess essentially ring pi character. This would imply a less important role of intramolecular electron transfer in the bromo derivative for production of the halogen negative fragment through dissociation of the first resonant state. The VAEs calculated as the anion/neutral energy difference with the 6-31+G* basis set which includes diffuse functions are relatively close to the experimental values but do not parallel their sequence. In addition the SOMO of some compounds is not described as a valence MO with large pi* character but as a diffuse sigma* MO.
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Affiliation(s)
- Alberto Modelli
- Dipartimento di Chimica "G. Ciamician", Università di Bologna, via Selmi 2, 40126 Bologna, Italy, and Centro Interdipartimentale di Ricerca in Scienze Ambientali (CIRSA), Università di Bologna, via S. Alberto 163, 48100 Ravenna, Italy
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Abstract
Dissociative electron transfers (ET) are reactions in which the ET is associated with the cleavage of a sigma bond. Although a rather satisfactory amount of information is currently available on the intermolecular and heterogeneous dissociative ET reactions, less is known for the corresponding intramolecular processes, despite the relevance of these reactions in both chemistry and biochemistry. This tutorial review focuses on the most recent developments in this area, with particular emphasis on the reactions occurring in well-defined Donor-Spacer-Acceptor molecular systems. The goal is to provide the reader with the essential background to understand and possibly predict the feasibility and rates of these reactions, as well as to stimulate the application of the intramolecular dissociative ET concepts and related issues to still unexplored molecular systems.
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Novel and efficient dye-linked radical generators for visible light photoinitiating polymerization. J Photochem Photobiol A Chem 2004. [DOI: 10.1016/j.nainr.2003.08.013] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Modelli A, Jones D. Empty Level Structure and Dissociative Electron Attachment Cross Sections in Saturated and Unsaturated Bromohydrocarbons. J Phys Chem A 2003. [DOI: 10.1021/jp036744r] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alberto Modelli
- Dipartimento di Chimica “G. Ciamician”, Università di Bologna, via Selmi 2, 40126 Bologna, Italy, Corso di Laurea in Scienze Ambientali, Piazza Kennedy 12, 48100 Ravenna, Italy, Istituto per la Sintesi Organica e la Fotoreattività (ISOF), C. N. R., via Gobetti 101, 40129 Bologna, Italy
| | - Derek Jones
- Dipartimento di Chimica “G. Ciamician”, Università di Bologna, via Selmi 2, 40126 Bologna, Italy, Corso di Laurea in Scienze Ambientali, Piazza Kennedy 12, 48100 Ravenna, Italy, Istituto per la Sintesi Organica e la Fotoreattività (ISOF), C. N. R., via Gobetti 101, 40129 Bologna, Italy
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Khatymov RV, Muftakhov MV, Mazunov VA. Phenol, chlorobenzene and chlorophenol isomers: resonant states and dissociative electron attachment. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2003; 17:2327-2336. [PMID: 14558134 DOI: 10.1002/rcm.1197] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
This paper reports a study of resonant dissociative electron attachment (DEA) to the phenol, chlorobenzene, p-, m-, and o-chlorophenol molecules. On the basis of spectroscopic and thermochemical approaches the resonant states of the molecular negative ions (NIs) and the structures of some dissociative decay products are assigned. In the electron energy range up to 3 eV, DEA processes are determined by the two 2[pi*]-shape resonances resulting mainly in formation of [M-H]- and/or Cl- ions. At higher electron energies the energy correlation between peaks in the negative ion effective yield curves and bands of UV spectra allowed identification of the core-excited resonances. The peculiarities of Cl- ion formation and the vibrational fine structure on the effective yield curves of the [M-H]- ions are discussed. The mass spectrometric procedures for measurement of relative cross sections for NI formation are described.
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Affiliation(s)
- Roustem V Khatymov
- Institute of Molecule and Crystal Physics, Ufa Research Centre of the Russian Academy of Science, Prospekt Oktyabrya 151, 450075 Ufa, Russia.
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