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Young CG. Chemical systems modeling the d1 Mo(V) states of molybdenum enzymes. J Inorg Biochem 2016; 162:238-252. [PMID: 27432259 DOI: 10.1016/j.jinorgbio.2016.06.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Revised: 05/14/2016] [Accepted: 06/03/2016] [Indexed: 11/29/2022]
Affiliation(s)
- Charles G Young
- Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia.
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2
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Liu X, Hou GL, Wang X, Wang XB. Negative Ion Photoelectron Spectroscopy Reveals Remarkable Noninnocence of Ligands in Nickel Bis(dithiolene) Complexes [Ni(dddt)2]− and [Ni(edo)2]−. J Phys Chem A 2016; 120:2854-62. [DOI: 10.1021/acs.jpca.6b02711] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xing Liu
- College
of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
- Department
of Chemistry, Tongji University, Shanghai 200092, China
| | - Gao-Lei Hou
- Physical
Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Xuefeng Wang
- Department
of Chemistry, Tongji University, Shanghai 200092, China
| | - Xue-Bin Wang
- Physical
Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
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3
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van Stipdonk MJ, Basu P, Dille SA, Gibson JK, Berden G, Oomens J. Infrared multiple photon dissociation spectroscopy of a gas-phase oxo-molybdenum complex with 1,2-dithiolene ligands. J Phys Chem A 2014; 118:5407-18. [PMID: 24988369 PMCID: PMC4338922 DOI: 10.1021/jp503222v] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
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Electrospray
ionization (ESI) in the negative ion mode was used
to create anionic, gas-phase oxo-molybdenum complexes with dithiolene
ligands. By varying ESI and ion transfer conditions, both doubly and
singly charged forms of the complex, with identical formulas, could
be observed. Collision-induced dissociation (CID) of the dianion generated
exclusively the monoanion, while fragmentation of the monoanion involved
decomposition of the dithiolene ligands. The intrinsic structure of
the monoanion and the dianion were determined by using wavelength-selective
infrared multiple-photon dissociation (IRMPD) spectroscopy and density
functional theory calculations. The IRMPD spectrum for the dianion
exhibits absorptions that can be assigned to (ligand) C=C,
C–S, C—C≡N, and Mo=O stretches. Comparison
of the IRMPD spectrum to spectra predicted for various possible conformations
allows assignment of a pseudo square pyramidal structure with C2v symmetry, equatorial coordination
of MoO2+ by the S atoms of the dithiolene ligands, and
a singlet spin state. A single absorption was observed for the oxidized
complex. When the same scaling factor employed for the dianion is
used for the oxidized version, theoretical spectra suggest that the
absorption is the Mo=O stretch for a distorted square pyramidal
structure and doublet spin state. A predicted change in conformation
upon oxidation of the dianion is consistent with a proposed bonding
scheme for the bent-metallocene dithiolene compounds [Lauher, J. W.; Hoffmann, R. J. Am.
Chem. Soc.1976, 98, 1729−1742], where a large
folding of the dithiolene moiety along the S···S vector
is dependent on the occupancy of the in-plane metal d-orbital.
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Affiliation(s)
- Michael J van Stipdonk
- Department of Chemistry and Biochemistry, Duquesne University , 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282, United States
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Zhou H, Zhang Y, Zhu DR. DFT studies on some properties of maleonitriledithiolate complexes [M(mnt)2]2- (M=Ni, Pd, Pt and Zn, Cd, Hg). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 86:20-26. [PMID: 22070993 DOI: 10.1016/j.saa.2011.09.034] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2011] [Revised: 09/10/2011] [Accepted: 09/13/2011] [Indexed: 05/31/2023]
Abstract
The structures and some molecular properties of the complexes M(mnt)(2)(2-) (M=Ni, Pd, Pt and Zn, Cd, Hg; mnt(2-)=deprotonated maleonitriledithiolate) have been studied by using density functional theory (DFT) B3LYP/LanL2DZ level of theory. Computed binding energies show that the sequences of binding strengths are Ni<Pd<Pt and Cd<Hg<Zn. The natural bonding orbitals analyses show that Ni, Pd and Pt gain 1.40e, 1.62e and 1.72e, respectively to their ns, [Formula: see text] and [Formula: see text] orbitals from both ligand mnt(2-) and (n-1)d(yz) of metal ions, while Zn, Cd and Hg complexes gain electrons to their ns orbitals. The absorption spectra of these complexes were obtained by using time-dependent density functional theory associated with polarized continuum model. Comparison of the absorption spectra in acetonitrile solution with those in gas phase show that the solvatochromic effect made the lowest energy absorption red shift by 31, 34 and 44 nm for d(8) metal complexes Ni(mnt)(2)(2-), Pd(mnt)(2)(2-) and Pt(mnt)(2)(2-), respectively, while blue shift by 28, 44, 25 nm for d(10) metal complexes Zn(mnt)(2)(2-), Cd(mnt)(2)(2-) and Hg(mnt)(2)(2-), respectively. The calculated results reproduced the experimental data with the deviations less than 5% for Ni-S stretching vibrational frequencies and less than 3% for other vibrational modes.
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Affiliation(s)
- Hu Zhou
- College of Chemistry and Chemical Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing University of Technology, Nanjing 210009, PR China
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Gancheff JS, Denis PA, Ekkehardt Hahn F. Assessment of density functional methods for the study of vanadium and rhenium complexes with thiolato ligands. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.theochem.2009.10.020] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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6
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Affiliation(s)
- Xue-Bin Wang
- Department of Physics, Washington State University, Richland, Washington 99354, and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352;
| | - Lai-Sheng Wang
- Department of Physics, Washington State University, Richland, Washington 99354, and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352;
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7
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Wang XB, Wang LS. Development of a low-temperature photoelectron spectroscopy instrument using an electrospray ion source and a cryogenically controlled ion trap. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2008; 79:073108. [PMID: 18681692 DOI: 10.1063/1.2957610] [Citation(s) in RCA: 234] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The ability to control ion temperatures is critical for gas phase spectroscopy and has been a challenge in chemical physics. A low-temperature photoelectron spectroscopy instrument has been developed for the investigation of complex anions in the gas phase, including multiply charged anions, solvated species, and biological molecules. The new apparatus consists of an electrospray ionization source, a three dimensional (3D) Paul trap for ion accumulation and cooling, a time-of-flight mass spectrometer, and a magnetic-bottle photoelectron analyzer. A key feature of the new instrument is the capability to cool and tune ion temperatures from 10 to 350 K in the 3D Paul trap, which is attached to the cold head of a closed cycle helium refrigerator. Ion cooling is accomplished in the Paul trap via collisions with a background gas and has been demonstrated by observation of complete elimination of vibrational hot bands in photoelectron spectra of various anions ranging from small molecules to complex species. Further evidence of ion cooling is shown by the observation of H2-physisorbed anions at low temperatures. Cold anions result in better resolved photoelectron spectra due to the elimination of vibrational hot bands and yield more accurate energetic and spectroscopic information. Temperature-dependent studies are made possible for weakly bonded molecular and solvated clusters, allowing thermodynamic information to be obtained.
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Affiliation(s)
- Xue-Bin Wang
- Department of Physics, Washington State University, 2710 University Drive, Richland, Washington 99354, USA and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, MS 8-88, P.O. Box 999, Richland, Washington 99352, USA
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Bayse CA, Ortwine KN. Calculation of photoelectron spectra of molybdenum and tungsten complexes using Green's functions methods. J Phys Chem A 2007; 111:7841-7. [PMID: 17636964 DOI: 10.1021/jp063029j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Green's functions calculations are presented for several complexes of molybdenum and tungsten, two metals that are similar structurally but display subtle, but significant, differences in electronic structure. Outer valence Green's functions IPs for M(CO)6, M(Me)6, MH6, [MCl4O](-), and [MO4](-) (M = Mo, W) are generally within +/-0.2 eV of available experimental photoelectron spectra. The calculations show that electrons in M-L bonding orbitals are ejected at lower energies for Mo while the detachment energy for electrons in d orbitals varies with metal and complex. For the metal carbonyls, the quasiparticle picture assumed in OVGF breaks down for the inner valence pi CO molecular orbitals due to the coupling of two-hole-one-particle charge transfer states to the one-hole states. Incorporation of the 2h1p states through a Tamm-Dancoff approximation calculation accurately represents the band due to detachment from these molecular orbitals. Though the ordering of IPs for Green's functions methods and DFT Koopmans' theorem IPs is similar for the highest IPs for most compounds considered, the breakdown of the quasiparticle picture for the metal carbonyls suggests that scaling of the latter values may result in a fortuitous or incorrect assignment of experimental VDEs.
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Affiliation(s)
- Craig A Bayse
- Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, Virginia 23529, USA
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Waters T, Wang XB, Wang LS. Electrospray ionization photoelectron spectroscopy: Probing the electronic structure of inorganic metal complexes in the gas-phase. Coord Chem Rev 2007. [DOI: 10.1016/j.ccr.2006.04.010] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Waters T, Wang XB, Woo HK, Wang LS. Photoelectron Spectroscopy of the Bis(dithiolene) Anions [M(mnt)2]n- (M = Fe − Zn; n = 1, 2): Changes in Electronic Structure with Variation of Metal Center and with Oxidation. Inorg Chem 2006; 45:5841-51. [PMID: 16841989 DOI: 10.1021/ic060255z] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A detailed understanding of the electronic structures of transition metal bis(dithiolene) centers is important in the context of their interesting redox, magnetic, and optical properties. The electronic structures of the series [M(mnt)2]n- (M = Fe - Zn; mnt = 1,2-S2C2(CN)2; n = 1, 2) were examined by a combination of photodetachment photoelectron spectroscopy and density functional theory calculations, providing insights into changes in electronic structure with variation of the metal center and with oxidation. Significant changes were observed for the dianions [M(mnt)2]2- due to stabilization of the metal 3d levels from Fe to Zn and the transition from square-planar to tetrahedral coordination about the metal center (Fe-Ni, D(2h) --> Cu D2 --> Zn, D(2d). Changes with oxidation from [M(mnt)2]2- to [M(mnt)2]1- were largely dependent on the nature of the redox-active orbital in the couple [M(mnt)2](2-/1-). In particular, the first detachment feature for [Fe(mnt)2]2- originated from a metal-based orbital (Fe(II) --> Fe(III)) while that for [Fe(mnt)2]1- originated from a ligand-based orbital, a consequence of stabilization of Fe 3d levels in the latter. In contrast, the first detachment feature for both of [Ni(mnt)2]2- and [Ni(mnt)2]1- originated from the same ligand-based orbital in both cases, a result of occupied Ni 3d levels being stabilized relative those of Fe 3d and occurring below the highest energy occupied ligand-based orbital for both of [Ni(mnt)2]2- and [Ni(mnt)2]1- . The combined data illustrate the subtle interplay between metal- and ligand-based redox chemistry in these species and demonstrate changes in their electronic structures with variation of metal center, oxidation, and coordination geometry.
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Affiliation(s)
- Tom Waters
- Department of Physics, Washington State University, 2710 University Drive, Richland, WA 99354, USA
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Waters T, Woo HK, Wang XB, Wang LS. Probing the Intrinsic Electronic Structure of the Bis(dithiolene) Anions [M(mnt)2]2- and [M(mnt)2]1- (M = Ni, Pd, Pt; mnt = 1,2-S2C2(CN)2) in the Gas Phase by Photoelectron Spectroscopy. J Am Chem Soc 2006; 128:4282-91. [PMID: 16569003 DOI: 10.1021/ja056342s] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
A detailed understanding of the electronic structure of transition metal bis(dithiolene) complexes is important because of their interesting redox, magnetic, optical, and conducting properties and their relevance to enzymes containing molybdenum and tungsten bis(dithiolene) centers. The electronic structures of the bis(dithiolene) anions [M(mnt)(2)](n-) (M = Ni, Pd, Pt; mnt = 1,2-S(2)C(2)(CN)(2); n = 0-2) were examined by a combination of photodetachment photoelectron spectroscopy (PES) and density functional theory calculations. The combined experimental and theoretical data provide insight into the molecular orbital energy levels of [M(mnt)(2)](2-) and the ground and excited states of [M(mnt)(2)](1-) and [M(mnt)(2)]. Detachment features from ligand-based orbitals of [M(mnt)(2)](2-) occur at similar energies for each species, independent of the metal center, while those arising from metal-based orbitals occur at higher energies for the heavier congeners. Electronic excitation energies inferred for [M(mnt)(2)](1-) from the PES experiments agree well with those obtained in optical absorption experiments in solution, with the PES experiments providing additional insight into the changes in energy of these transitions as a function of metal. The singly charged anions [M(mnt)(2)](1-) were also prepared and studied independently. Electron detachment from the ground states of these doublet anions accessed the lowest singlet and triplet states of neutral [M(mnt)(2)], thereby providing a direct experimental measure of their singlet-triplet splitting.
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Affiliation(s)
- Tom Waters
- Department of Physics, Washington State University, Richland, 99354, USA
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Sugimoto H, Tarumizu M, Tanaka K, Miyake H, Tsukube H. A new series of molybdenum-(IV), -(V), and -(VI) dithiolate compounds as active site models of molybdoenzymes: preparation, crystal structures, spectroscopic/electrochemical properties and reactivity in oxygen atom transfer. Dalton Trans 2005:3558-65. [PMID: 16234938 DOI: 10.1039/b503828f] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new set of molybdenum-(IV), -(V), and -(VI) compounds containing 3,6-dichloro-1,2-benzenedithiolate (bdtCl2) were isolated and characterised by crystallographic and other spectroscopic techniques as active site models of arsenite oxidase, one of the molybdoenzymes. MoO2 compounds were prepared in high yields by reaction of MoO2Cl2 with bdtCl2, related dithiolene and thiocatecholate in methanol at low temperature. The bdtCl2 ligand particularly stabilised the MoO compounds with oxidation numbers of +4 and +5 as well as the MoO2 compound with an oxidation number of +6. The compounds (Et4N)2[MoVIO2(bdtCl2)2], (Et4N)2[MoIVO(bdtCl2)2] and (Et4N)[MoVO(bdtCl2)2] were successfully isolated, whereas (Et3NH)2[MoO2(thiocatecholate)2] gradually decomposed in acetonitrile. A distorted octahedral structure similar to that of was suggested for the structure of the active site of the oxidised form of arsenite oxidase on the basis of a comparison of their bond distances and angles. The bond distances and angles around the molybdenum(IV) atom in were similar to those around the molybdenum(IV) centre in the reduced form of arsenite oxidase. The reversible / couple exhibited a more positive redox potential than common MoO dithiolene compounds. Underwent an irreversible proton-coupled reduction process to yield. An oxygen atom transfer reaction of with triphenylphosphine afforded and triphenylphosphine oxide, and proceeded in second order as v=-d/dt[MoO2]=k[MoO2][PPh3]. The structures and properties of the oxo-bridged dinuclear compound (Et4N)2[MoVIO2(bdtCl2)]2(micro-O), a dimer of bdtCl2 and were also characterised.
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Affiliation(s)
- Hideki Sugimoto
- Department of Chemistry, Graduate School of Science, Osaka City University, Sumiyoshi-ku, Osaka, 558-8585, Japan.
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McNamara JP, Mohr M, Wang H, Hillier * IH. Oxygen atom transfer reactions in inorganic analogues of the active site of dimethyl sulfoxide reductase; a DFT and ONIOM (DFT:PM3) study. Mol Phys 2005. [DOI: 10.1080/00268970500179461] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Enemark JH, Cooney JJA, Wang JJ, Holm RH. Synthetic Analogues and Reaction Systems Relevant to the Molybdenum and Tungsten Oxotransferases. Chem Rev 2003; 104:1175-200. [PMID: 14871153 DOI: 10.1021/cr020609d] [Citation(s) in RCA: 424] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- John H Enemark
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721, USA
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Joshi HK, Cooney JJA, Inscore FE, Gruhn NE, Lichtenberger DL, Enemark JH. Investigation of metal-dithiolate fold angle effects: implications for molybdenum and tungsten enzymes. Proc Natl Acad Sci U S A 2003; 100:3719-24. [PMID: 12655066 PMCID: PMC152988 DOI: 10.1073/pnas.0636832100] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2002] [Indexed: 11/18/2022] Open
Abstract
Gas-phase photoelectron spectroscopy and density functional theory have been used to investigate the interactions between the sulfur pi-orbitals of arene dithiolates and high-valent transition metals as minimum molecular models of the active site features of pyranopterin MoW enzymes. The compounds (Tp*)MoO(bdt) (compound 1), Cp(2)Mo(bdt) (compound 2), and Cp(2)Ti(bdt) (compound 3) [where Tp* is hydrotris(3,5-dimethyl-1-pyrazolyl)borate, bdt is 1,2-benzenedithiolate, and Cp is eta(5)- cyclopentadienyl] provide access to three different electronic configurations of the metal, formally d(1), d(2), and d(0), respectively. The gas-phase photoelectron spectra show that ionizations from occupied metal and sulfur based valence orbitals are more clearly observed in compounds 2 and 3 than in compound 1. The observed ionization energies and characters compare very well with those calculated by density functional theory. A "dithiolate-folding-effect" involving an interaction of the metal in-plane and sulfur-pi orbitals is proposed to be a factor in the electron transfer reactions that regenerate the active sites of molybdenum and tungsten enzymes.
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Affiliation(s)
- Hemant K Joshi
- Department of Chemistry, University of Arizona, Tucson, AZ 85721, USA
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