Diarylurea-linked zinc porphyrin dimer as a dual-mode artificial receptor: supramolecular control of complexation-facilitated photoinduced electron transfer

Regulating and Predicting the Polyhedral Crystal Morphology in Spirofluorene Molecular Systems

Crystallization of organic steric molecules often leads to multiple polyhedral crystal morphologies. However, the relationships among the molecular structure, supramolecular interaction, aggregation mode and crystal morphology are still unclear. In this work, we elaborate two model crystals formed by spiro[fluorene-9,9'-xanthene] (SFX) and spiro[cyclopenta[1,2-b : 5,4-b']dipyridine-5,9'-xanthene] (SDAFX) to demonstrate the feasibility of morphology prediction by periodic bond chain (PBC) theory based on interaction energy (IE) values in terms of single point energy. With non-directional van der Waals forces, only one PBC direction is found in SFX crystal, leading to the irregular 1D rod-like structure. Compared with SFX, the extra N heteroatoms in SDAFX can bring additional hydrogen bonds and some other interactions into the bulky molecular skeletons, inducing 3-dimensionally oriented PBCs to form the explicit F-face network in SDAFX which leads to the final octahedral structure. A simple and accurate method has been provided to quantify PBC vector on the supramolecular level in the organic molecular system, and the PBC theory has also been further demonstrated and developed in the morphology prediction of organic spiro-molecules.

Rigid trisporphyrin with 1,3,5-triazine core: Synthesis, spectroscopy, and DABCO-induced self-assembly properties

A rigid Zn–trisporphyrin (1), the Zinc complex of 2,4,6-tris(5,10,15-triphenylporphyrinatozinc)-1,3,5-triazine (2) with three porphyrin moieties bridged by a rigid 1,3,5-triazine group, was synthesized and characterized by a series of spectroscopic methods including mass, 1H NMR, electronic absorption, and IR spectroscopy in addition to elemental analysis. The UV-vis spectrophotometric titration results revealed that along with the addition of the 1,4-diazabicyclo[2.2.2]octane (DABCO) form 0 to 3 equiv, 1 could form a 2:3 sandwich-type coordination cage in chloroform, which then transformed into a 1:3 open complex when the DABCO concentration was more than 3 equiv. Such DABCO-induced self- and disassembly processes were also confirmed by 1H NMR spectrophotometric titrations. In particular, it was demonstrated by comparative studies that the synergistic effect of the three porphyrin moieties linked together by the rigid 1,3,5-triazine group in 1 promoted the formation and stabilization of the 2:3 sandwich-type coordination cage. This result will be helpful towards the fabrication of various self-assembly structures based on metalloporphyrins with application potential in diverse areas such as molecular recognition and separation.

Determination of the Orientation of Pendants on Rigid-Rod Polymers

Bis-norbornene and bis-cyclobutene with different kinds of linkers have been extensively used for the synthesis of double stranded ladderphanes under ruthenium- or molybdenum-catalyzed ring opening metathesis polymerization (ROMP) conditions. The key to the success relies on the selective formation of comb-like polynorbornenes or polycycloubtenes, where pendants are all aligned towards similar direction. This minireview summarizes various methods (chemical methods, spectroscopic means, and nonlinear optical measurements) for determining the comb-like conformations of pendants on these rigid-rod polymers. The approach is based on the proximal relationship between adjacent pendants. Interactions between these adjacent pendants would enable a change in chemical reactivity.

Molecular tweezers with a rotationally restricted linker and freely rotating porphyrin moieties

The effect of the degree of conformational rigidity and/or flexibility on preorganisation in artificial molecular receptors continues to be actively explored by supramolecular chemists. This work describes a bis-porphyrin architecture, linked via a rigid polycyclic backbone, in which a sterically bulky 2,3,5,6-tetramethylphenyl diimide core restricts rotation to afford two non-interconvertible tweezer conformations; syn- and anti-. After separation, the host-guest chemistry of each conformation was studied independently. The difference in host geometry allows only the syn-conformation to form a strong 1 : 1 bis-porphyrin complex with the diamino ligand 1,4-diazabicyclo[2.2.2]octane (DABCO) (K11 = 1.25 × 108 M-1), with the anti-conformation adopting a 2 : 2 sandwich complex with DABCO (K22 = 5.57 × 1017 M-3).

Preparation and crystal structures of charge-transfer complexes of acyclic host molecules bearing pyrogallol derivatives with paraquat

The complexation of paraquat with adamantane-based molecules possessing two or three pyrogallol derivatives as acyclic host molecules afforded charge-transfer cocrystals with a 2 : 1 host : guest complexation stoichiometry through noncovalent interactions.

Metal-mediated multiporphyrin functional assemblies

During the last ten years, our research group has been applying metal-mediated self-assembly processes to the construction of multiporphyrin functional assemblies. The construction of well-defined and discrete supramolecular structures resulting from self-assembly requires the use of multiple and separated connections operating in one or more closed loops. Consequently, the great majority of the multiporphyrin assemblies that we have prepared are of cyclic nature. We have placed special emphasis not only on the characterization in solution of the formed assemblies but also on the thermodynamic characterization of the assembly process and in the assessment of cooperativity. Finally, we also present examples in which functionality has been derived from the three-dimensional structures of multicomponent assemblies.

A bioinspired self assembled dimeric porphyrin pocket that binds electron accepting ligands

A binding pocket consisting of two zinc porphyrins self assembled by Watson-Crick base pairing is presented. The porphyrin binding pocket is located in the confined environment of a lipid membrane whereas the DNA is located in the water phase. Bidentate electron accepting ligands are shown to coordinate in-between the two porphyrins.

Selective anion binding by a cofacial binuclear zinc complex of a Schiff-base pyrrole macrocycle

The synthesis of the new cofacial binuclear zinc complex [Zn(2)(L)] of a Schiff-base pyrrole macrocycle is reported. It was discovered that the binuclear microenvironment between the two metals of [Zn(2)(L)] is suited for the encapsulation of anions, leading to the formation of [K(THF)(6)][Zn(2)(μ-Cl)(L)]·2THF and [Bu(n)(4)N][Zn(2)(μ-OH)(L)] which were characterized by X-ray crystallography. Unusually obtuse Zn-X-Zn angles (X = Cl: 150.54(9)° and OH: 157.4(3)°) illustrate the weak character of these interactions and the importance of the cleft preorganization to stabilize the host. In the absence of added anion, aggregation of [Zn(2)(L)] was inferred and investigated by successive dilutions and by the addition of coordinating solvents to [Zn(2)(L)] solutions using NMR spectroscopy as well as isothermal microcalorimetry (ITC). On anion addition, evidence for deaggregation of [Zn(2)(L)], combined with the formation of the 1:1 host-guest complex, was observed by NMR spectroscopy and ITC titrations. Furthermore, [Zn(2)(L)] binds to Cl(-) selectively in THF as deduced from the ITC analyses, while other halides induce only deaggregation. These conclusions were reinforced by density functional theory (DFT) calculations, which indicated that the binding energies of OH(-) and Cl(-) were significantly greater than for the other halides.

4-Methyl-3-nitrobenzaldehyde

In the crystal structure of the title compound, C₈H₇NO₃, mol­ecules are linked through weak inter­molecular C—H⋯O hydrogen bonding.

Diastereochemically controlled porphyrin dimer formation on a DNA duplex scaffold

DNA-porphyrin conjugates were designed and synthesized for the preparation of the conformationally controlled porphyrin dimer structures constructed on a d(GCGTATACGC)2. Porphyrin derivatives were introduced to the central TATpA sequence where p represents the phosphoramidate for the attachment of the free-base porphyrin (FbP) and zinc-coordinated porphyrin (ZnP), which allows contact of the two porphyrins in the minor groove. The porphyrin dimers were characterized using CD, UV-vis, steady-state, and time-resolved fluorescence spectroscopies, indicating that the porphyrins form face-to-face conformations. Also the co-facial conformation was confirmed by comparison with spectra of the non-self-complementary duplex containing one porphyrin moiety. Introduction of zinc into porphyrin moiety destabilized the duplex formation. Two diastereomers showed different thermal stabilities and affected the conformations of porphyrin dimers. The temperature-dependent assembly and the conformational change of the porphyrin dimer on the duplex DNA were observed in the UV-vis spectra, indicating that the dynamic movement of the porphyrin dimer occurs on the duplex. The results indicate that the porphyrin dimers of DNA-FbP conjugates are overlapped clockwise and are located in the minor groove of the usual B-form DNA backbone. The interaction and conformation of two porphyrin moieties are controlled by the following three factors: (1) temperature change during and after formation of the duplex porphyrins at lower temperature; (2) diastereochemistry of the phosphoramidates where porphyrins are connected via a linker; and (3) zinc ion coordination that destabilizes the interaction of porphyrins as well duplex formation.

Molecular tweezer based on zinc porphyrin-substituted diarylethene

A molecular tweezer, zinc porphyrin-dithienylethene-zinc porphyrin (ZnP-DTE-ZnP) triad, has been prepared. Triad ZnPor-DTE-ZnPor showed a little electronic communication among the chromophores judged from the comparison of the steady-state absorption and fluorescence spectra for triads and their component compounds. Irradiation of ZnPor-DTE-ZnPor with UV light converts dithienylethene moiety from open form to closed form. The complexation of ZnP-DTE-ZnP with 4,4'-bipyridyl were investigated by absorption and fluorescence spectroscopic measurements. ZnP-DTE-ZnP forms a 1:1 complex with 4,4'-bipyridyl. The stability constants of log K=4.0 and 4.2 mol(-1)dm3 were determined by absorption and fluorescence spectral changes, respectively.

Design and Synthesis of Binucleating Macrocyclic Clefts Derived from Schiff-Base Calixpyrroles

The syntheses, characterisation and complexation reactions of a series of binucleating Schiff-base calixpyrrole macrocycles are described. The acid-templated [2+2] condensations between meso-disubstituted diformyldipyrromethanes and o-phenylenediamines generate the Schiff-base pyrrolic macrocycles H(4)L(1) to H(4)L(6) upon basic workup. The single-crystal X-ray structures of both H(4)L(3).2 EtOH and H(4)L(6).H2O confirm that [2+2] cyclisation has occurred, with either EtOH or H2O hydrogen-bonded within the macrocyclic cleft. A series of complexation reactions generate the dipalladium [Pd2(L)] (L=L(1) to L(5)), dinickel [Ni2(L(1))] and dicopper [Cu2(L)] (L=L(1) to L(3)) complexes. All of these complexes have been structurally characterised in the solid state and are found to adopt wedged structures that are enforced by the rigidity of the aryl backbone to give a cleft reminiscent of the structures of Pacman porphyrins. The binuclear nickel complexes [Ni2(mu-OMe)2Cl2(HOMe)2(H(4)L(1))] and [Ni2(mu-OH)2Cl2(HOMe)(H(4)L(5))] have also been prepared, although in these cases the solid-state structures show that the macrocyclic ligand remains protonated at the pyrrolic nitrogen atoms, and the Ni(II) cations are therefore co-ordinated by the imine nitrogen atoms only to give an open conformation for the complex. The dicopper complex [Cu2(L(3))] was crystallised in the presence of pyridine to form the adduct [Cu2(py)(L(3))], in which, in the solid state, the pyridine ligand is bound within the binuclear molecular cleft. Reaction between H(4)L(1) and [Mn(thf){N(SiMe(3))2}2] results in clean formation of the dimanganese complex [Mn2(L(1))], which, upon crystallisation, formed the mixed-valent complex [Mn2(mu-OH)(L(1))] in which the hydroxo ligand bridges the metal centres within the molecular cleft.

Synthetic pores with sticky π-clamps

In this report, we describe design, synthesis, evaluation and molecular dynamics simulations of synthetic multifunctional pores with pi-acidic naphthalenediimide clamps. Experimental evidence is provided for the formation of unstable but inert, heterogeneous and acid-insensitive dynamic tetrameric pores that are sensitive to base and ionic strength. Blockage experiments reveal that the introduction of aromatic electron donor-acceptor interactions provides access to the selective recognition of pi-basic intercalators within the pore. This breakthrough is important for the application of synthetic pores as multianalyte sensors.

From Supramolecular Porphyrin Tweezers to Dynamic AnBmClDk Multiporphyrin Arrangements Through Orthogonal Coordination

A dynamic, supramolecular, three-component A(n)B(m)C(l) bis(zinc porphyrin) tweezer has been prepared quantitatively using the heteroleptic bisphenanthroline (HETPHEN) concept. Upon addition of nitrogenous spacers of different length, namely, the extended bipyridine 3 a, 4,4'-bipyridine (3 b), and 1,4-diazabicyclo[2.2.2]octane (DABCO; 3 c), to set up an additional orthogonal binding motif (Zn(Por)-N(spacer)), three structurally different, still dynamic, four-component A(n)B(m)C(l)D(k) assemblies were cleanly formed, as indicated by UV/Vis and NMR titrations as well as by DOSY investigations. The structures were identified as a bridged monotweezer A(2)BC(2)D, a doubly bridged double tweezer A(4)B(2)C(4)D(2), and a triply bridged double tweezer A(4)B(2)C(4)D(3), the latter resembling a porphyrin stack. Notably, the same structures were equally formed directly from a mixture of the constituents A, B, C, and D put together in any sequence if the correct stoichiometry was applied.

Pyridylporphyrin metallacycles with a slipped cofacial geometry: spectroscopic, X-ray, and photophysical characterization

Treatment of the octahedral Ru(II) complex [trans,cis,cis-RuCl(2)(DMSO-O)(2)(CO)(2)] with an equimolar amount of 5,10-bis(3'-pyridyl)-15,20-diphenylporphyrin (3'-cis-DPyP) yielded, upon selective replacement of the DMSO ligands, the neutral 2 + 2 metallacycle 2. NMR spectroscopy provided unambiguous evidence that only one highly symmetrical species, in which the two chromophores are held in a slipped cofacial arrangement by the external Ru(II) metal fragments, exists in solution. The unprecedented geometry of 2, and of the fully zincated analogue 2a, were confirmed in the solid state by X-ray structural investigations. The spatial arrangement of the two parallel chromophores in 2, with an interplanar distance of 4.18 A and a lateral offset (center-to-center distance) of 9.82 A, is reminiscent of those of the special pair of bacteriophylls in the reaction centers and of adjacent B850 units in the LH2 light-harvesting antenna systems of photosynthetic bacteria. For comparison, the X-ray structure of the corresponding metallacycle with 4'-cis-DPyP, 1a, is also reported. In 1a, the two porphyrins have an almost perfect coplanar arrangement. The semi-zincated metallacycles 1b and 2b, in which only one of the two chromophores bears an inner zinc atom, were prepared from 1 and 2, respectively, and isolated in pure form. Detailed photophysical investigations of the above porphyrin assemblies were performed. In particular, very fast photoinduced intercomponent energy transfer processes from the zinc porphyrin to the free-base unit were detected in the semi-metalated derivatives 1b and 2b (time constants: 14 and 12 ps, respectively).

Guest Binding and New Self-Assembly of Bisporphyrins

In organic medium, bisprophyrins 1-6 connected by aromatic linkers self-assemble via subtle forces such as van der Waals, pi-pi stacking, and CH/pi to form supramolecular dimers. The structures of bisporphyrin dimer 1.1 were discussed using our chemical shift simulation, revealing that 1.1 mainly adopts the self-complementary structure A. ESI mass experiments of the bisporphyrins showed that 1-4 form only the dimers; however, trimers as well as the dimers of 5 and 6 were observed in the gas phase. Thus, the assemblies of bisporphyrin 5 and 6 should adopt structure B, which still has a binding site to which another bisporphyrin can fit to form oligomeric structures. The dimerization constant of bisporphyrin 1 is dependent on the solvent polarity: the values decrease in the order of toluene > chloroform > 20% methanol-chloroform. The thermodynamic studies of the dimerization processes revealed that desolvation as well as pi-pi stacking interactions play a key role in the formation of the self-complementary dimers. The binding studies of bisporphyrin 1 with a variety of electron deficient aromatic guests 9-17 were carried out in chloroform. Soret and Q-bands of 1 showed the characteristic changes with the addition of guests 9-13 and 15, and large upfield shifts of their protons were observed in their complexation studies with (1)H NMR spectroscopy. These results suggested that the electron deficient aromatic guests bound within the cleft of bisporphyrin 1 via charge transfer as well as pi-pi stacking interactions between the guests and the porphyrin rings. The dimerization constant of 1.1 is much smaller than the association constant of 1.9, suggesting that the dissociation of dimer 1.1 can be regulated by binding of 9 within the cleft. The addition of 9 into the solution of 1.1 resulted in the quick dissociation of the dimer and the formation of 1.9.