1
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Molinski TF. Empirical Chiroptical Analyses of Vicinal Bromochloro Natural Products by van't Hoff's Principle of Optical Superposition: Assignment of the C-16 Configurations of Callophycols A and B. J Org Chem 2024. [PMID: 38935812 DOI: 10.1021/acs.joc.4c00905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
A simple empirical method is described that allows the assignment of absolute configurations of natural products containing chiral vicinal bromochloro (VBC) units, including the bromochloro substituted isoprenyl units present in the structures of antiproliferative halomon (1a) and its halogen-swapped isomer iso-halomon (1b) from the red alga, Portieria hornemannii, and callophycols A (3) and B (4) from Callophycus serratus. The relative configurations of 3 and 4, published in 2007, were incomplete: C-16 was left unassigned. It is now shown that the additivity of molar rotations, [M]D (herein, abbreviated [M])─a consequence of van't Hoff's principle of optical superposition─could be used to deconvolute rotatory contributions, designated as [MX] and [MY] of the two remotely spaced chiral substructures within 3 and 4 using simple arithmetic. Input of proxy values, [M Y1] and [MY2], for the two different VBC units in two equations for [MX] and application of a "conditional test" returns the same value for [MX] only when a proxy with the correct configuration is included. It is revealed that 3 and 4 have opposite configurations at the C-16 stereocenter: 16S and 16R, respectively. Two important implications lie in these findings: 3 and 4 appear to qualify as paired-regioisomers, coupled through a putative dyotropic rearrangement (DR), and the biosyntheses of other Callophycus secondary metabolites, now numbering over 50, are tightly controlled by stereoelectronic considerations including neighboring group interactions of the DR. It now appears, counter to earlier suggestions, that the chirality of Callophycus secondary metabolites, despite their high chemodiversity, are surprisingly highly conserved. Enantiofacial halogenation additions to the C═C double bonds of precursor alkenes appear to direct the formation of the remaining stereocenters at both the halogenated benzoate-decalin core and the distal VBC of 3 and 4. A consistent hypothesis is proposed to account for macrolactonizations in other Callophycus natural products including bromophycolides A and B. The conditional test of molar rotations was applied in a different context to understand the chiroptical properties and trends observed in the highly iodinated meroditerpenes, iodocallophycols A-E, also from Callophycus sp., resulting in the revision of the configuration of callophycol E from (10R,14R) to (10S,14S).
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Affiliation(s)
- Tadeusz F Molinski
- Department of Chemistry and Biochemistry and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, 9500 Gilman Drive MC0358, San Diego, California 92093, United States
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2
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Hao X, Li S, Li J, Wang G, Li J, Peng Z, Gan M. Acremosides A-G, Sugar Alcohol-Conjugated Acyclic Sesquiterpenes from a Sponge-Derived Acremonium Species. JOURNAL OF NATURAL PRODUCTS 2024. [PMID: 38561238 DOI: 10.1021/acs.jnatprod.4c00015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Seven new sugar alcohol-conjugated acyclic sesquiterpenes, acremosides A-G (1-7), were isolated from the cultures of the sponge-associated fungus Acremonium sp. IMB18-086 cultivated with heat-killed Pseudomonas aeruginosa. The structures were determined by comprehensive analyses of 1D and 2D NMR spectroscopic data. The relative configurations were established by J-based configuration analysis and acetonide derivatization. The absolute configurations were elucidated by the Mosher ester method and ECD calculations. The structures of acremosides E-G (5-7) featured the linear sesquiterpene skeleton with a tetrahydrofuran moiety attached to a sugar alcohol. Acremosides A (1) and C-E (3-5) showed significant inhibitory activities against hepatitis C virus (EC50 values of 4.8-8.8 μM) with no cytotoxicity (CC50 of >200 μM).
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Affiliation(s)
- Xiaomeng Hao
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, P. R. China
| | - Shasha Li
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, P. R. China
| | - Jianrui Li
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, P. R. China
| | - Guiyang Wang
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, P. R. China
| | - Jiao Li
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, P. R. China
| | - Zonggen Peng
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, P. R. China
| | - Maoluo Gan
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, P. R. China
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3
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Liu F, Qiao X, Li Q, Zhou J, Gao J, He F, Wu P, Chen C, Sun W, Zhu H, Zhang Y. Aculeatiols A-G: Lovastatin Derivatives Extracted from Aspergillus aculeatus. JOURNAL OF NATURAL PRODUCTS 2024. [PMID: 38372239 DOI: 10.1021/acs.jnatprod.3c00872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
In this study, we isolated lovastatin derivatives, including aculeatiols A-G (1-7) and three known compounds (8-10), from Aspergillus aculeatus. Their structures and absolute configurations were experimentally determined by high-resolution electrospray ionization mass spectrometry, nuclear magnetic resonance spectroscopy, and X-ray diffraction analyses, and the results were corroborated by quantum-chemical calculations. As members of the lovastatin derivatives, aculeatiols A-C (1-3) possess a γ-lactone functional group in the side chain. Compound 6 represents the first example that features an undescribed aromatized heterotetracyclic 6/6/6/6 ring system. Biologically, the lipid-lowering effects of all of these compounds were evaluated by analyzing the free fatty acid-induced intracellular lipid accumulation. In addition, compound 5, which regulated the transcription of genes associated with lipid uptake and synthesis, inhibited the accumulation of lipids.
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Affiliation(s)
- Fei Liu
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Xinyi Qiao
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Qin Li
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Jiajun Zhou
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Jie Gao
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Feng He
- Hubei Topgene Biotechnology Technical Research Institute Co., Ltd., Wuhan 430030, People's Republic of China
| | - Peng Wu
- Hubei Topgene Biotechnology Technical Research Institute Co., Ltd., Wuhan 430030, People's Republic of China
| | - Chunmei Chen
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Weiguang Sun
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Hucheng Zhu
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
| | - Yonghui Zhang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, People's Republic of China
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4
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Gómez-Bra A, Gude L, Arias-Pérez MS. Synthesis, structural study and antitumor activity of novel alditol-based imidazophenanthrolines (aldo-IPs). Bioorg Med Chem 2024; 99:117563. [PMID: 38215623 DOI: 10.1016/j.bmc.2023.117563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 11/17/2023] [Accepted: 12/18/2023] [Indexed: 01/14/2024]
Abstract
A series of 1H-imidazo [4,5-f][1,10] phenanthroline derivatives functionalized at 2-position with chiral, and conformationally flexible polyhydroxy alkyl chains derived from carbohydrates (alditol-based imidazophenanthrolines, aldo-IPs) is presented herein. These novel glycomimetics showed relevant and differential cytotoxic activity against several cultured tumor cell lines (PC3, HeLa and HT-29), dependent on the nature and stereochemistry of the polyhydroxy alkyl chain. The mannose-based aldo-IP demonstrated the higher cytotoxicity in the series, substantially better than cisplatin metallo-drug in all cell lines tested, and better than G-quadruplex ligand 360A in HeLa and HT29 cells. Cell cycle experiments and Annexin V-PI assays revealed that aldo-IPs induce apoptosis in HeLa cells. Initial study of DNA interactions by DNA FRET melting assays proved that the aldo-IPs produce only a slight thermal stabilization of DNA secondary structures, more pronounced in the case of quadruplex DNA. Viscosity titrations with CT dsDNA suggest that the compounds behave as DNA groove binders, whereas equilibrium dialysis assays showed that the compounds bind CT with Ka values in the range 104-105 M-1. The aldo-IP derivatives were obtained with synthetically useful yields through a feasible one-pot multistep process, by aerobic oxidative cyclization of 1,10-phenanthroline-5,6-diamine with a selection of unprotected aldoses using (NH4)2SO4 as promoter.
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Affiliation(s)
- Ana Gómez-Bra
- Universidad de Alcalá, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación Química "Andrés M. del Río" (IQAR), 28805-Alcalá de Henares, Madrid, Spain; Grupo DISCOBAC, Instituto de Investigación Sanitaria de Castilla-La Mancha (IDISCAM), Spain
| | - Lourdes Gude
- Universidad de Alcalá, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación Química "Andrés M. del Río" (IQAR), 28805-Alcalá de Henares, Madrid, Spain; Grupo DISCOBAC, Instituto de Investigación Sanitaria de Castilla-La Mancha (IDISCAM), Spain.
| | - María-Selma Arias-Pérez
- Universidad de Alcalá, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación Química "Andrés M. del Río" (IQAR), 28805-Alcalá de Henares, Madrid, Spain.
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5
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Liao Y, Wang XJ, Ma GL, Candra H, Qiu En SL, Khandelwal S, Liang ZX. Biosynthesis of Octacosamicin A: Uncommon Starter/extender Units and Product Releasing via Intermolecular Amidation. Chembiochem 2024; 25:e202300590. [PMID: 37908177 DOI: 10.1002/cbic.202300590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 10/28/2023] [Accepted: 10/31/2023] [Indexed: 11/02/2023]
Abstract
Octacosamicin A is an antifungal metabolite featuring a linear polyene-polyol chain flanked by N-hydroxyguanidine and glycine moieties. We report here that sub-inhibitory concentrations of streptomycin elicited the production of octacosamicin A in Amycolatopsis azurea DSM 43854T . We identified the biosynthetic gene cluster (oca BGC) that encodes a modular polyketide synthase (PKS) system for assembling the polyene-polyol chain of octacosamicin A. Our analysis suggested that the N-hydroxyguanidine unit originates from a 4-guanidinobutyryl-CoA starter unit, while the PKS incorporates an α-hydroxyketone moiety using a (2R)-hydroxymalonyl-CoA extender unit. The modular PKS system contains a non-canonical terminal module that lacks thioesterase (TE) and acyl carrier protein (ACP) domains, indicating the biosynthesis is likely to employ an unconventional and cryptic off-loading mechanism that attaches glycine to the polyene-polyol chain via an intermolecular amidation reaction.
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Affiliation(s)
- Yanghui Liao
- School of Biological Sciences, Nanyang Technological University, Singapore, 67551, Singapore
| | - Xue-Jiao Wang
- School of Biological Sciences, Nanyang Technological University, Singapore, 67551, Singapore
| | - Guang-Lei Ma
- Future Health Laboratory, Innovation Center of Yangtze River Delta, Zhejiang University, Jiaxing, 314102, China
| | - Hartono Candra
- School of Biological Sciences, Nanyang Technological University, Singapore, 67551, Singapore
| | - Sean Lee Qiu En
- School of Biological Sciences, Nanyang Technological University, Singapore, 67551, Singapore
| | - Srashti Khandelwal
- School of Biological Sciences, Nanyang Technological University, Singapore, 67551, Singapore
| | - Zhao-Xun Liang
- School of Biological Sciences, Nanyang Technological University, Singapore, 67551, Singapore
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6
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Takamura H, Hattori K, Ohashi T, Otsu T, Kadota I. Relative stereochemical determination of the C61-C83 fragment of symbiodinolide using a stereodivergent synthetic approach. Org Biomol Chem 2023; 21:8837-8848. [PMID: 37791452 DOI: 10.1039/d3ob01420g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
Structural determination is required in the use of marine natural products to create novel drugs and drug leads in medicinal chemistry. Symbiodinolide, which is a polyol marine natural product with a molecular weight of 2860, increases the intracellular Ca2+ concentration and exhibits inhibitory activity against cyclooxygenase-1. Seventy percent of the structure of symbiodinolide has been stereochemically clarified. Herein, we report the elucidation of the relative configuration of the C61-C83 fragment, which is among the remaining thirty percent, using a stereodivergent synthetic strategy. We first assigned the relative configuration of the C61-C74 fragment. Two candidate diastereomers of the C61-C74 fragment were synthesized, and their NMR data were compared with those of the natural product, revealing the relative stereochemistry of this component. We then narrowed down the candidate compounds for the C69-C83 fragment from 16 possible diastereomers by analyzing the NMR data of the natural product, and we thus selected eight candidate diastereomers. Stereodivergent synthesis of the candidates for this fragment and comparison of the NMR data of the natural product and the eight synthetic products resulted in the relative stereostructural clarification of the C69-C83 fragment. These individually determined relative stereochemistries of the C61-C74 and C69-C83 fragments were connected via the common C69-C73 tetrahydropyran moiety of the fragments. Finally, the relative configuration of the C61-C83 fragment of symbiodinolide was determined. The stereodivergent synthetic approach used in this study can be extended to the stereochemical determination of other fragments of symbiodinolide.
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Affiliation(s)
- Hiroyoshi Takamura
- Department of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan.
| | - Kosuke Hattori
- Department of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan.
| | - Takumi Ohashi
- Department of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan.
| | - Taichi Otsu
- Department of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan.
| | - Isao Kadota
- Department of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan.
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7
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Evans DA, Beiger JJ, Burch JD, Fuller PH, Glorius F, Kattnig E, Thaisrivongs DA, Trenkle WC, Young JM, Zhang J. Total Synthesis of Aflastatin A. J Am Chem Soc 2022; 144:19953-19972. [PMID: 36269121 DOI: 10.1021/jacs.2c08244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The total syntheses of aflastatin A and its C3-C48 degradation fragment (6a, R = H) have been accomplished. The syntheses feature several complex diastereoselective fragment couplings, including a Felkin-selective trityl-catalyzed Mukaiyama aldol reaction, a chelate-controlled aldol reaction involving soft enolization with magnesium, and an anti-Felkin-selective boron-mediated oxygenated aldol reaction. Careful comparison of the spectroscopic data for the synthetic C3-C48 degradation fragment to that reported by the isolation group revealed a structural misassignment in the lactol region of the naturally derived degradation product. Ultimately, the data reported for the naturally derived aflastatin A C3-C48 degradation lactol (6a, R = H) were attributed to its derivative lactol trideuteriomethyl ether (6c, R = CD3). Additionally, the revised absolute configurations of six stereogenic centers (C8, C9, and C28-C31) were confirmed.
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Affiliation(s)
- David A Evans
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Jason J Beiger
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Jason D Burch
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Peter H Fuller
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Frank Glorius
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Egmont Kattnig
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - David A Thaisrivongs
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - William C Trenkle
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Joseph M Young
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Jing Zhang
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
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8
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Kadowaki T, Kainuma R, Kato S, Konno H. Synthesis and Configuration Confirmation of the ATHOD Fatty Amino Acid Residue in the Burkholdines. JOURNAL OF NATURAL PRODUCTS 2022; 85:2052-2061. [PMID: 35853209 DOI: 10.1021/acs.jnatprod.2c00469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Eight possible diastereomers of the 3-amino-5,6,7-trihydroxy octadecanoic acid (ATHOD) moiety of the burkholdines (Bks) have been synthesized and their configurations assigned. Though the relative configuration of the triol in the ATHOD residue of the Bks was proposed to be anti-anti-anti in the literature, 1H NMR spectra of our synthesized anti-anti-anti ATHOD derivative was inconsistent with that of the isolated ATHOD residue, suggesting that the assignment of the relative configuration of that residue in the literature was incorrect. However, by comparison of the NMR data of our ATHOD derivatives with that of configurationally defined samples of 2-amino-4-pentanol using Kishi's NMR database method, we conclude that the absolute configuration of the ATHOD moiety is (3R,5S,6R,7S). In addition, we revealed that the ATHOD residue present in the occidiofungins A-D has the same configuration as that in all the Bks.
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Affiliation(s)
- Toma Kadowaki
- Department of Biological Engineering, Graduate School of Science and Engineering, Yamagata University, Yonezawa, 992-8510, Japan
| | - Rin Kainuma
- Department of Biological Engineering, Graduate School of Science and Engineering, Yamagata University, Yonezawa, 992-8510, Japan
| | - Seiya Kato
- Department of Biological Engineering, Graduate School of Science and Engineering, Yamagata University, Yonezawa, 992-8510, Japan
| | - Hiroyuki Konno
- Department of Biological Engineering, Graduate School of Science and Engineering, Yamagata University, Yonezawa, 992-8510, Japan
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Amewu RK, Spangenberg T. Detection of Mycolactone by Thin Layer Chromatography. Methods Mol Biol 2022; 2387:131-149. [PMID: 34643909 DOI: 10.1007/978-1-0716-1779-3_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
By means of thin layer chromatography coupled to a fluorescence enhancer, a highly sensitive and operationally simple method to detect the mycolactones stemming from the human pathogen Mycobacterium ulcerans was developed and applied to various sample sources.
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Affiliation(s)
| | - Thomas Spangenberg
- Global Health Institute of Merck, Ares Trading S.A. (a subsidiary of Merck KGaA Darmstadt Germany), Eysins, Switzerland
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Berlinck RGS, Crnkovic CM, Gubiani JR, Bernardi DI, Ióca LP, Quintana-Bulla JI. The isolation of water-soluble natural products - challenges, strategies and perspectives. Nat Prod Rep 2021; 39:596-669. [PMID: 34647117 DOI: 10.1039/d1np00037c] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Covering period: up to 2019Water-soluble natural products constitute a relevant group of secondary metabolites notably known for presenting potent biological activities. Examples are aminoglycosides, β-lactam antibiotics, saponins of both terrestrial and marine origin, and marine toxins. Although extensively investigated in the past, particularly during the golden age of antibiotics, hydrophilic fractions have been less scrutinized during the last few decades. This review addresses the possible reasons on why water-soluble metabolites are now under investigated and describes approaches and strategies for the isolation of these natural compounds. It presents examples of several classes of hydrosoluble natural products and how they have been isolated. Novel stationary phases and chromatography techniques are also reviewed, providing a perspective towards a renaissance in the investigation of water-soluble natural products.
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Affiliation(s)
- Roberto G S Berlinck
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Camila M Crnkovic
- Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, CEP 05508-000, São Paulo, SP, Brazil
| | - Juliana R Gubiani
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Darlon I Bernardi
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Laura P Ióca
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Jairo I Quintana-Bulla
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
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11
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Nazarski RB. Summary of DFT calculations coupled with current statistical and/or artificial neural network (ANN) methods to assist experimental NMR data in identifying diastereomeric structures. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2020.152548] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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12
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Lee YJ, Cho Y, Tran HNK. Secondary Metabolites from the Marine Sponges of the Genus Petrosia: A Literature Review of 43 Years of Research. Mar Drugs 2021; 19:md19030122. [PMID: 33668842 PMCID: PMC7996255 DOI: 10.3390/md19030122] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 02/21/2021] [Accepted: 02/22/2021] [Indexed: 12/21/2022] Open
Abstract
Sponges are prolific sources of various natural products that have provided the chemical scaffolds for new drugs. The sponges of the genus Petrosia inhabit various regions and contain a variety of biologically active natural products such as polyacetylenes, sterols, meroterpenoids, and alkaloids. This review aims to provide a comprehensive summary of the chemical structures and biological activities of Petrosia metabolites covering a period of more than four decades (between 1978 and 2020). It is also described in this review that the major groups of metabolites from members of the genus Petrosia differed with latitude. The polyacetylenes were identified to be the most predominant metabolites in Petrosia sponges in temperate regions, while tropical Petrosia species were sources of a greater variety of metabolites, such as meroterpenoids, sterols, polyacetylenes, and alkaloids.
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Affiliation(s)
- Yeon-Ju Lee
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyangro, Busan 49111, Korea; (Y.C.); (H.N.K.T.)
- Department of Applied Ocean Science, University of Science and Technology, Daejeon 34113, Korea
- Correspondence: ; Tel.: +82-51-664-3350
| | - Yeonwoo Cho
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyangro, Busan 49111, Korea; (Y.C.); (H.N.K.T.)
- Department of Applied Ocean Science, University of Science and Technology, Daejeon 34113, Korea
| | - Huynh Nguyen Khanh Tran
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyangro, Busan 49111, Korea; (Y.C.); (H.N.K.T.)
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A Polyol-Polyol Super-Carbon-Chain Compound Containing Thirty-Six Carbon Stereocenters from the Dinoflagellate Amphidinium gibbosum: Absolute Configuration and Multi-Segment Modification. Mar Drugs 2020; 18:md18120590. [PMID: 33255887 PMCID: PMC7759953 DOI: 10.3390/md18120590] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 11/21/2020] [Accepted: 11/22/2020] [Indexed: 12/24/2022] Open
Abstract
A super-carbon-chain compound, named gibbosol C, featuring a polyoxygenated C70-linear-carbon-chain backbone encompassing two acyclic polyol chains, was obtained from the South China Sea dinoflagellate Amphidinium gibbosum. Its planar structure was elucidated by extensive NMR investigations, whereas its absolute configurations, featuring the presence of 36 carbon stereocenters and 30 hydroxy groups, were successfully established by comparison of NMR data of the ozonolyzed products with those of gibbosol A, combined with J-based configuration analysis, Kishi’s universal NMR database, and the modified Mosher’s MTPA ester method. Multi-segment modification was revealed as the smart biosynthetic strategy for the dinoflagellate to create remarkable super-carbon-chain compounds with structural diversity.
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14
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Domínguez HJ, Cabrera-García D, Cuadrado C, Novelli A, Fernández-Sánchez MT, Fernández JJ, Daranas AH. Prorocentroic Acid, a Neuroactive Super-Carbon-Chain Compound from the Dinoflagellate Prorocentrum hoffmannianum. Org Lett 2020; 23:13-18. [DOI: 10.1021/acs.orglett.0c03437] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Humberto J. Domínguez
- Instituto Universitario de Bio-Orgánica Antonio González, University of La Laguna, 38206, Tenerife, Spain
| | - David Cabrera-García
- Department of Biochemistry and Molecular Biology and University Institute of Biotechnology of Asturias (IUBA), Campus “El Cristo”, University of Oviedo, 33006 Oviedo, Oviedo, Spain
| | - Cristina Cuadrado
- Instituto de Productos Naturales y Agrobiología, Consejo Superior de Investigaciones Científicas (IPNA-CSIC), La Laguna, 38206, Tenerife, Spain
| | - Antonello Novelli
- Department of Psychology and University Institute of Biotechnology of Asturias (IUBA), Campus “El Cristo”, University of Oviedo; Institute for Sanitary Research of the Princedom of Asturias (ISPA), 33006 Oviedo, Oviedo, Spain
| | - M. Teresa Fernández-Sánchez
- Department of Biochemistry and Molecular Biology and University Institute of Biotechnology of Asturias (IUBA), Campus “El Cristo”, University of Oviedo, 33006 Oviedo, Oviedo, Spain
| | - José J. Fernández
- Instituto Universitario de Bio-Orgánica Antonio González, University of La Laguna, 38206, Tenerife, Spain
| | - Antonio Hernández Daranas
- Instituto de Productos Naturales y Agrobiología, Consejo Superior de Investigaciones Científicas (IPNA-CSIC), La Laguna, 38206, Tenerife, Spain
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15
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Li W, Yan R, Yu Y, Shi Z, Mándi A, Shen L, Kurtán T, Wu J. Determination of the Absolute Configuration of Super‐Carbon‐Chain Compounds by a Combined Chemical, Spectroscopic, and Computational Approach: Gibbosols A and B. Angew Chem Int Ed Engl 2020; 59:13028-13036. [PMID: 32343023 DOI: 10.1002/anie.202004358] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 04/15/2020] [Indexed: 12/22/2022]
Affiliation(s)
- Wan‐Shan Li
- School of Pharmaceutical Sciences Southern Medical University 1838 Guangzhou Avenue North Guangzhou 510515 China
| | - Ren‐Jie Yan
- School of Pharmaceutical Sciences Southern Medical University 1838 Guangzhou Avenue North Guangzhou 510515 China
| | - Yi Yu
- Marine Drugs Research Center College of Pharmacy Jinan University 601 Huangpu Avenue West Guangzhou 510632 China
| | - Zhi Shi
- College of Life Science and Technology Jinan University 601 Huangpu Avenue West Guangzhou 510632 China
| | - Attila Mándi
- Department of Organic Chemistry University of Debrecen PO Box 400 4002 Debrecen Hungary
| | - Li Shen
- Marine Drugs Research Center College of Pharmacy Jinan University 601 Huangpu Avenue West Guangzhou 510632 China
| | - Tibor Kurtán
- Department of Organic Chemistry University of Debrecen PO Box 400 4002 Debrecen Hungary
| | - Jun Wu
- School of Pharmaceutical Sciences Southern Medical University 1838 Guangzhou Avenue North Guangzhou 510515 China
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16
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Li W, Yan R, Yu Y, Shi Z, Mándi A, Shen L, Kurtán T, Wu J. Determination of the Absolute Configuration of Super‐Carbon‐Chain Compounds by a Combined Chemical, Spectroscopic, and Computational Approach: Gibbosols A and B. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202004358] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Wan‐Shan Li
- School of Pharmaceutical Sciences Southern Medical University 1838 Guangzhou Avenue North Guangzhou 510515 China
| | - Ren‐Jie Yan
- School of Pharmaceutical Sciences Southern Medical University 1838 Guangzhou Avenue North Guangzhou 510515 China
| | - Yi Yu
- Marine Drugs Research Center College of Pharmacy Jinan University 601 Huangpu Avenue West Guangzhou 510632 China
| | - Zhi Shi
- College of Life Science and Technology Jinan University 601 Huangpu Avenue West Guangzhou 510632 China
| | - Attila Mándi
- Department of Organic Chemistry University of Debrecen PO Box 400 4002 Debrecen Hungary
| | - Li Shen
- Marine Drugs Research Center College of Pharmacy Jinan University 601 Huangpu Avenue West Guangzhou 510632 China
| | - Tibor Kurtán
- Department of Organic Chemistry University of Debrecen PO Box 400 4002 Debrecen Hungary
| | - Jun Wu
- School of Pharmaceutical Sciences Southern Medical University 1838 Guangzhou Avenue North Guangzhou 510515 China
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17
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Pathak P, Baird MA, Shvartsburg AA. Structurally Informative Isotopic Shifts in Ion Mobility Spectra for Heavier Species. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2020; 31:137-145. [PMID: 32881519 DOI: 10.1021/jasms.9b00018] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The isotopic molecular envelopes due to stable isotopes for most elements were a staple of mass spectrometry since its origins, often leveraged to identify and quantify compounds. However, all isomers share one MS envelope. As the molecular motion in media also depends on the isotopic composition, separations such as liquid chromatography (LC) and ion mobility spectrometry (IMS) must also feature isotopic envelopes. These were largely not observed because of limited resolution, except for the (structurally uninformative) shifts in LC upon H/D exchange. We recently found the isotopic shifts in FAIMS for small haloanilines (∼130-170 Da) to hinge on the halogen position, opening a novel route to isomer characterization. Here, we extend the capability to heavier species: dibromoanilines (DBAs, ∼250 Da) and tribromoanilines (TBAs, ∼330 Da). The 13C shifts for DBAs and TBAs vary across isomers, some changing sign. While 81Br shifts are less specific, the 2-D 13C/81Br shifts unequivocally differentiate all isomers. The trends for DBAs track those for dichloroanilines, with the 13C shift order preserved for most isomers. The peak broadening due to merged isotopomers is also isomer-specific. The absolute shifts for TBAs are smaller than those for lighter haloanilines, but differentiate isomers as well because of compressed uncertainties. These results showcase the feasibility of broadly distinguishing isomers in the more topical ∼200-300 Da range using the isotopic shifts in IMS spectra.
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Affiliation(s)
- Pratima Pathak
- Department of Chemistry, Wichita State University, 1845 Fairmount, Wichita, Kansas 67260, United States
| | - Matthew A Baird
- Department of Chemistry, Wichita State University, 1845 Fairmount, Wichita, Kansas 67260, United States
| | - Alexandre A Shvartsburg
- Department of Chemistry, Wichita State University, 1845 Fairmount, Wichita, Kansas 67260, United States
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18
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Menna M, Imperatore C, Mangoni A, Della Sala G, Taglialatela-Scafati O. Challenges in the configuration assignment of natural products. A case-selective perspective. Nat Prod Rep 2019; 36:476-489. [DOI: 10.1039/c8np00053k] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
An overview by a case study approach on the currently available methods for the configurational analysis of natural products.
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Affiliation(s)
- Marialuisa Menna
- Department of Pharmacy
- University of Naples Federico II
- 80131 Napoli
- Italy
| | | | - Alfonso Mangoni
- Department of Pharmacy
- University of Naples Federico II
- 80131 Napoli
- Italy
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19
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Heat Shock Protein-Inducing Property of Diarylheptanoid Containing Chalcone Moiety from Alpinia katsumadai. Molecules 2017; 22:molecules22101750. [PMID: 29039794 PMCID: PMC6151646 DOI: 10.3390/molecules22101750] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 10/14/2017] [Accepted: 10/16/2017] [Indexed: 01/10/2023] Open
Abstract
A new diarylheptanoid containing a chalcone moiety, katsumain H (1), was isolated from the seeds of Alpinia katsumadai. The structure was elucidated using a combination of 1D/2D NMR spectroscopy and mass spectrometry data analysis. The absolute configurations of C-3, C-5, and C-7 in 1 were assigned based on its optical rotation and after comparing its NMR chemical shifts with those of its diastereoisomers, katsumain E and katsumain F, which were previously isolated from this plant and characterized. In this study, the stimulatory effects of compounds 1 and 2 were evaluated on heat shock factor 1 (HSF1), heat shock protein 27 (HSP27), and HSP70. Compounds 1 and 2 increased the expression of HSF1 (1.056- and 1.200-fold, respectively), HSP27 (1.312- and 1.242-fold, respectively), and HSP70 (1.234- and 1.271-fold, respectively), without increased cytotoxicity.
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20
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Instant structure profiling of substituted catechins by chemical shift fingerprint of hydrogens of phenolic hydroxyl groups. J Funct Foods 2017. [DOI: 10.1016/j.jff.2017.07.036] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
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21
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Boshkow J, Fischer S, Bailey AM, Wolfrum S, Carreira EM. Stereochemistry and biological activity of chlorinated lipids: a study of danicalipin A and selected diastereomers. Chem Sci 2017; 8:6904-6910. [PMID: 29147515 PMCID: PMC5632803 DOI: 10.1039/c7sc03124f] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 08/07/2017] [Indexed: 11/21/2022] Open
Abstract
The syntheses of (+)-16-epi- and (+)-11,15-di-epi-danicalipin A (2 and 3) are reported. The conformations of the parent diols 5 and 6 as well as the corresponding disulfates 2 and 3 were determined on the basis of J-based configuration analysis and supported by calculations. The impact of configuration on membrane permeability in Gram-negative bacteria and mammalian cell lines was assessed as well as cytotoxicity. Although diastereomer 2 showed similar behavior to natural (+)-danicalipin A (1), strikingly, the more flexible C11,C15-epimer 3 had no effect on permeability and proved equally or more toxic towards multiple cell lines.
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Affiliation(s)
- J Boshkow
- Laboratorium für Organische Chemie , ETH Zürich , HCI H335, Vladimir-Prelog-Weg 3 , 8093 Zürich , Switzerland .
| | - S Fischer
- Laboratorium für Organische Chemie , ETH Zürich , HCI H335, Vladimir-Prelog-Weg 3 , 8093 Zürich , Switzerland .
| | - A M Bailey
- Laboratorium für Organische Chemie , ETH Zürich , HCI H335, Vladimir-Prelog-Weg 3 , 8093 Zürich , Switzerland .
| | - S Wolfrum
- Laboratorium für Organische Chemie , ETH Zürich , HCI H335, Vladimir-Prelog-Weg 3 , 8093 Zürich , Switzerland .
| | - E M Carreira
- Laboratorium für Organische Chemie , ETH Zürich , HCI H335, Vladimir-Prelog-Weg 3 , 8093 Zürich , Switzerland .
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22
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23
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Wang J, Tong R. A NMR method for relative stereochemical assignments of the tricyclic core of cephalosporolides, penisporolides and related synthetic analogues. Org Chem Front 2017. [DOI: 10.1039/c6qo00556j] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A new NMR method is developed to discriminate the four possible diastereomeric SAFLs, leading to revisions of 11 synthetic compounds.
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Affiliation(s)
- Jian Wang
- Department of Chemistry
- Hong Kong University of Science and Technology
- Kowloon
- China
| | - Rongbiao Tong
- Department of Chemistry
- Hong Kong University of Science and Technology
- Kowloon
- China
- HKUST Shenzhen Research Institute
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24
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Tokuyama H, Yamada K, Fujiwara H, Sakata J, Okano K, Sappan M, Isaka M. Structural Determination of (−)-SCH 64874 and Hirsutellomycin by Semisynthesis. J Org Chem 2016; 82:353-371. [DOI: 10.1021/acs.joc.6b02452] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hidetoshi Tokuyama
- Graduate
School of Pharmaceutical Sciences, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Kaori Yamada
- Graduate
School of Pharmaceutical Sciences, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Hideto Fujiwara
- Graduate
School of Pharmaceutical Sciences, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Juri Sakata
- Graduate
School of Pharmaceutical Sciences, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Kentaro Okano
- Graduate
School of Pharmaceutical Sciences, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Malipan Sappan
- National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phaholyothin
Road, Klong Luang, Pathumthani 12120, Thailand
| | - Masahiko Isaka
- National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phaholyothin
Road, Klong Luang, Pathumthani 12120, Thailand
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25
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Takada K, Imae Y, Ise Y, Ohtsuka S, Ito A, Okada S, Yoshida M, Matsunaga S. Yakushinamides, Polyoxygenated Fatty Acid Amides That Inhibit HDACs and SIRTs, from the Marine Sponge Theonella swinhoei. JOURNAL OF NATURAL PRODUCTS 2016; 79:2384-2390. [PMID: 27548648 DOI: 10.1021/acs.jnatprod.6b00588] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Yakushinamides A (1) and B (2), prolyl amides of polyoxygenated fatty acids, have been isolated from the marine sponge Theonella swinhoei as inhibitors of HDACs and SIRTs. Their planar structures were determined by interpretation of the NMR data of the intact molecules and tandem FABMS data of the methanolysis products. For the assignment of the relative configurations of the three contiguous oxymethine carbons in 1 and 2, Kishi's universal NMR database was applied to the methanolysis products. During the assignments of relative configurations of the isolated 1-hydroxy-3-methyl moiety in 1 and the isolated 1-hydroxy-2-methyl moiety in 2, we found diagnostic NMR features to distinguish each pair of diastereomers. The absolute configurations of 1 and 2 were determined by a combination of the modified Mosher's method and Marfey's method. Although the modified Mosher's method was successfully applied to the methanolysis product of 1, this method gave an ambiguous result at C-20 when applied to the methanolysis product of 2, even after oxidative cleavage of the C-14 and C-15 bond.
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Affiliation(s)
- Kentaro Takada
- Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo , Bunkyo-ku, Tokyo 113-8657, Japan
| | - Yasufumi Imae
- Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo , Bunkyo-ku, Tokyo 113-8657, Japan
| | - Yuji Ise
- Sugashima Marine Biological Laboratory, Nagoya University , Toba, Mie 517-0004, Japan
| | - Susumu Ohtsuka
- Takehara Marine Station, Hiroshima University , Takehara, Hiroshima 725-0024, Japan
| | - Akihiro Ito
- Chemical Genomics Reserach Group, RIKEN Center for Sustainable Resource Science , Wako, Saitama 351-0198, Japan
- Chemical Genetics Laboratory, RIKEN , Wako, Saitama 351-0198, Japan
| | - Shigeru Okada
- Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo , Bunkyo-ku, Tokyo 113-8657, Japan
| | - Minoru Yoshida
- Chemical Genomics Reserach Group, RIKEN Center for Sustainable Resource Science , Wako, Saitama 351-0198, Japan
- Chemical Genetics Laboratory, RIKEN , Wako, Saitama 351-0198, Japan
| | - Shigeki Matsunaga
- Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo , Bunkyo-ku, Tokyo 113-8657, Japan
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26
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Gaudêncio SP, Pereira F. Dereplication: racing to speed up the natural products discovery process. Nat Prod Rep 2015; 32:779-810. [PMID: 25850681 DOI: 10.1039/c4np00134f] [Citation(s) in RCA: 162] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Covering: 1993-2014 (July)To alleviate the dereplication holdup, which is a major bottleneck in natural products discovery, scientists have been conducting their research efforts to add tools to their "bag of tricks" aiming to achieve faster, more accurate and efficient ways to accelerate the pace of the drug discovery process. Consequently dereplication has become a hot topic presenting a huge publication boom since 2012, blending multidisciplinary fields in new ways that provide important conceptual and/or methodological advances, opening up pioneering research prospects in this field.
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Affiliation(s)
- Susana P Gaudêncio
- LAQV, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.
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27
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Adduci LL, Bender TA, Dabrowski JA, Gagné MR. Chemoselective conversion of biologically sourced polyols into chiral synthons. Nat Chem 2015; 7:576-81. [DOI: 10.1038/nchem.2277] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2015] [Accepted: 05/06/2015] [Indexed: 11/09/2022]
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28
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Li K, Chung-Davidson YW, Bussy U, Li W. Recent advances and applications of experimental technologies in marine natural product research. Mar Drugs 2015; 13:2694-713. [PMID: 25939037 PMCID: PMC4446601 DOI: 10.3390/md13052694] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2015] [Revised: 04/02/2015] [Accepted: 04/14/2015] [Indexed: 11/16/2022] Open
Abstract
Marine natural products are a rich source of novel and biologically active compounds. The number of identified marine natural compounds has grown 20% over the last five years from 2009 to 2013. Several challenges, including sample collection and structure elucidation, have limited the development of this research field. Nonetheless, new approaches, such as sampling strategies for organisms from extreme ocean environments, nanoscale NMR and computational chemistry for structural determination, are now available to overcome the barriers. In this review, we highlight the experimental technology innovations in the field of marine natural products, which in our view will lead to the development of many new drugs in the future.
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Affiliation(s)
- Ke Li
- Department of Fisheries and Wildlife, Michigan State University, Room 13 Natural Resources Building, 480 Wilson Road, East Lansing, MI 48824, USA.
| | - Yu-Wen Chung-Davidson
- Department of Fisheries and Wildlife, Michigan State University, Room 13 Natural Resources Building, 480 Wilson Road, East Lansing, MI 48824, USA.
| | - Ugo Bussy
- Department of Fisheries and Wildlife, Michigan State University, Room 13 Natural Resources Building, 480 Wilson Road, East Lansing, MI 48824, USA.
| | - Weiming Li
- Department of Fisheries and Wildlife, Michigan State University, Room 13 Natural Resources Building, 480 Wilson Road, East Lansing, MI 48824, USA.
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29
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Takamura H, Wada H, Ogino M, Kikuchi T, Kadota I, Uemura D. Stereodivergent Synthesis and Relative Stereostructure of the C1–C13 Fragment of Symbiodinolide. J Org Chem 2015; 80:3111-23. [DOI: 10.1021/acs.joc.5b00027] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hiroyoshi Takamura
- Department
of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Hiroko Wada
- Department
of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Mao Ogino
- Department
of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Takahiro Kikuchi
- Department
of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Isao Kadota
- Department
of Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Daisuke Uemura
- Department
of Chemistry, Faculty of Science, Kanagawa University, 2946 Tsuchiya, Hiratsuka 259-1293, Japan
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30
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Audoin C, Sánchez JA, Genta-Jouve G, Alfonso A, Rios L, Vale C, Thomas OP, Botana LM. Autumnalamide, a prenylated cyclic peptide from the cyanobacterium Phormidium autumnale, acts on SH-SY5Y cells at the mitochondrial level. JOURNAL OF NATURAL PRODUCTS 2014; 77:2196-2205. [PMID: 25265024 DOI: 10.1021/np500374a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Filamentous cyanobacteria of the genus Phormidium have been rarely studied for their chemical diversity. For the first time, the cultivable Phormidium autumnale was shown to produce a prenylated cyclic peptide named autumnalamide (1). The structure of this peptide was fully determined after a deep exploration of the spectroscopic data, including NMR and HRMS. Interestingly, a prenyl moiety was located on the guanidine end of the arginine amino acid. The absolute configurations of most amino acids were assessed using enantioselective GC/MS analysis, with (13)C NMR modeling being used for the determination of d-arginine and d-proline. The effects of 1 on sodium and calcium fluxes were studied in SH-SY5Y and hNav 1.6 HEK cells. When the Ca(2+) influx was stimulated by thapsigargin, strong inhibition was observed in the presence of 1. As a consequence, this compound may act by disrupting the normal calcium uptake of this organelle, inducing the opening of the mitochondrial permeability transition pore, which results in the indirect blockade of store-operated channels.
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Affiliation(s)
- Coralie Audoin
- Institut de Chimie de Nice-PCRE, UMR 7272 CNRS, Faculty of Science, University of Nice Sophia-Antipolis , Parc Valrose, 06108 Nice, France
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31
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Domínguez HJ, Napolitano JG, Fernández-Sánchez MT, Cabrera-García D, Novelli A, Norte M, Fernández JJ, Daranas AH. Belizentrin, a Highly Bioactive Macrocycle from the Dinoflagellate Prorocentrum belizeanum. Org Lett 2014; 16:4546-9. [DOI: 10.1021/ol502102f] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Humberto J. Domínguez
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
| | - José G. Napolitano
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
| | - M. Teresa Fernández-Sánchez
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
| | - David Cabrera-García
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
| | - Antonello Novelli
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
| | - Manuel Norte
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
| | - José J. Fernández
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
| | - Antonio Hernández Daranas
- Institute
for Bio-Organic Chemistry “Antonio González”,
Center for Biomedical Research of the Canary Islands,
and ∥Department of Chemical
Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, 38206 La Laguna, Tenerife, Spain
- Department
of Biochemistry and Molecular Biology, and §Department of Psychology, Institute
of Biotechnology of Asturias, Campus “El Cristo”, University of Oviedo, Oviedo 33006, Spain
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32
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Yoshimura A, Kishimoto S, Nishimura S, Otsuka S, Sakai Y, Hattori A, Kakeya H. Prediction and Determination of the Stereochemistry of the 1,3,5-Trimethyl-Substituted Alkyl Chain in Verucopeptin, a Microbial Metabolite. J Org Chem 2014; 79:6858-67. [DOI: 10.1021/jo500906v] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Aya Yoshimura
- Department of System Chemotherapy and Molecular Sciences,
Division of Bioinformatics and Chemical Genomics, Graduate School
of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan
| | - Shinji Kishimoto
- Department of System Chemotherapy and Molecular Sciences,
Division of Bioinformatics and Chemical Genomics, Graduate School
of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan
| | - Shinichi Nishimura
- Department of System Chemotherapy and Molecular Sciences,
Division of Bioinformatics and Chemical Genomics, Graduate School
of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan
| | - Saori Otsuka
- Department of System Chemotherapy and Molecular Sciences,
Division of Bioinformatics and Chemical Genomics, Graduate School
of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan
| | - Yuki Sakai
- Department of System Chemotherapy and Molecular Sciences,
Division of Bioinformatics and Chemical Genomics, Graduate School
of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan
| | - Akira Hattori
- Department of System Chemotherapy and Molecular Sciences,
Division of Bioinformatics and Chemical Genomics, Graduate School
of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan
| | - Hideaki Kakeya
- Department of System Chemotherapy and Molecular Sciences,
Division of Bioinformatics and Chemical Genomics, Graduate School
of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan
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33
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Zhang FM, Tu YQ. Towards the real didemnaketal A: total syntheses of two C-21 stereoisomers of the proposed didemnaketal A. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.05.065] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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34
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On the assignment of the absolute configuration at the isolated methyl branch in miyakosyne A, cytotoxic linear acetylene, from the deep-sea marine sponge Petrosia sp. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.11.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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35
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Norrehed S, Johansson H, Grennberg H, Gogoll A. Improved Stereochemical Analysis of Conformationally Flexible Diamines by Binding to a Bisporphyrin Molecular Clip. Chemistry 2013; 19:14631-8. [DOI: 10.1002/chem.201300533] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2013] [Revised: 06/06/2013] [Indexed: 01/09/2023]
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36
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Wang Y, O’Doherty GA. Cryptocaryols A and B: total syntheses, stereochemical revision, structure elucidation, and structure-activity relationship. J Am Chem Soc 2013; 135:9334-7. [PMID: 23750754 PMCID: PMC3772640 DOI: 10.1021/ja404401f] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The first total syntheses and structural elucidation of cryptocaryol A and cryptocaryol B were achieved in 23 and 25 linear steps, respectively. The synthesis relied on the use of a key pseudo-Cs symmetric pentaol intermediate, which in a stereochemically divergent manner was converted into either enantiomer as well as diastereomers. This synthetic effort enabled the first structure-activity relationships of this class of PDCD4 stabilizing natural products.
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Affiliation(s)
- Yanping Wang
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115
| | - George A. O’Doherty
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115
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37
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Napolitano JG, Lankin DC, Graf TN, Friesen JB, Chen SN, McAlpine JB, Oberlies NH, Pauli GF. HiFSA fingerprinting applied to isomers with near-identical NMR spectra: the silybin/isosilybin case. J Org Chem 2013; 78:2827-39. [PMID: 23461697 PMCID: PMC3640553 DOI: 10.1021/jo302720h] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
This study demonstrates how regio- and diastereo-isomers with near-identical NMR spectra can be distinguished and unambiguously assigned using quantum mechanical driven (1)H iterative Full Spin Analysis (HiFSA). The method is illustrated with four natural products, the flavonolignans silybin A, silybin B, isosilybin A, and isosilybin B, which exhibit extremely similar coupling patterns and chemical shift differences well below the commonly reported level of accuracy of 0.01 ppm. The HiFSA approach generated highly reproducible (1)H NMR fingerprints that enable distinction of all four isomers at (1)H frequencies from 300 to 900 MHz. Furthermore, it is demonstrated that the underlying numeric (1)H NMR profiles, combined with iterative computational analysis, allow parallel quantification of all four isomers, even in difficult to characterize reference materials and mixtures. The results shed new light on the historical challenges to the qualitative and quantitative analysis of these therapeutically relevant flavonolignans and open new opportunities to explore hidden diversity in the chemical space of organic molecules.
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Affiliation(s)
- José G. Napolitano
- Department of Medicinal Chemistry & Pharmacognosy, and Institute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, IL 60612, United States
| | - David C. Lankin
- Department of Medicinal Chemistry & Pharmacognosy, and Institute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, IL 60612, United States
| | - Tyler N. Graf
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC 27402, United States
| | - J. Brent Friesen
- Department of Medicinal Chemistry & Pharmacognosy, and Institute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, IL 60612, United States
- Rosary College of Arts and Sciences, Dominican University, River Forest, IL 60305, United States
| | - Shao-Nong Chen
- Department of Medicinal Chemistry & Pharmacognosy, and Institute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, IL 60612, United States
| | - James B. McAlpine
- Department of Medicinal Chemistry & Pharmacognosy, and Institute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, IL 60612, United States
| | - Nicholas H. Oberlies
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC 27402, United States
| | - Guido F. Pauli
- Department of Medicinal Chemistry & Pharmacognosy, and Institute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, IL 60612, United States
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38
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Kumar P, Dwivedi N. Proline catalyzed α-aminoxylation reaction in the synthesis of biologically active compounds. Acc Chem Res 2013; 46:289-99. [PMID: 23148510 DOI: 10.1021/ar300135u] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The search for new and efficient ways to synthesize optically pure compounds is an active area of research in organic synthesis. Asymmetric catalysis provides a practical, cost-effective, and efficient method to create a variety of complex natural products containing multiple stereocenters. In recent years, chemists have become more interested in using small organic molecules to catalyze organic reactions. As a result, organocatalysis has emerged both as a promising strategy and as an alternative to catalysis with expensive proteins or toxic metals. One of the most successful and widely studied secondary amine-based organocatalysts is proline. This small molecule can catalyze numerous reactions such as the aldol, Mannich, Michael addition, Robinson annulation, Diels-Alder, α-functionalization, α-amination, and α-aminoxylation reactions. Catalytic and enantioselective α-oxygenation of carbonyl compounds is an important reaction to access a variety of useful building blocks for bioactive molecules. Proline catalyzed α-aminoxylation using nitrosobenzene as oxygen source, followed by in situ reduction, gives enantiomerically pure 1,2-diol. This molecule can then undergo a variety of organic reactions. In addition, proline organocatalysis provides access to an assortment of biologically active natural products including mevinoline (a cholesterol lowering drug), tetrahydrolipstatin (an antiobesity drug), R(+)-α-lipoic acid, and bovidic acid. In this Account, we present an iterative organocatalytic approach to synthesize both syn- and anti-1,3-polyols, both enantio- and stereoselectively. This method is primarily based on proline-catalyzed sequential α-aminoxylation and Horner-Wadsworth-Emmons (HWE) olefination of aldehyde to give a γ-hydroxy ester. In addition, we briefly illustrate the broad application of our recently developed strategy for 1,3-polyols, which serve as valuable, enantiopure building blocks for polyketides and other structurally diverse and complex natural products. Other research groups have also applied similar strategies to prepare such bioactive molecules as littoralisone, brasoside and (+)-cytotrienin A. Among the various synthetic approaches reported for 1,3-polyols, our organocatalytic iterative approach appears to be very promising and robust. This method combines the merit of organocatalytic reaction with an easy access to both enantiomerically pure forms of proline, mild reaction conditions, and tolerance to both air and moisture. In this Account, we present the latest applications of organocatalysis and how organic chemists can use this new tool for the total synthesis of complex natural products.
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Affiliation(s)
- Pradeep Kumar
- Organic Chemistry Division, CSIR-National Chemical Laboratory, Pune 411008, India
| | - Namrata Dwivedi
- Organic Chemistry Division, CSIR-National Chemical Laboratory, Pune 411008, India
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39
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Nozawa K, Tsuda M, Tanaka N, Kubota T, Fukushi E, Kawabata J, Kobayashi J. Stereochemistry of theonezolides A–C. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2012.11.120] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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40
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Horikawa K, Yagyu T, Yoshioka Y, Fujiwara T, Kanamoto A, Okamoto T, Ojika M. Petrosiols A–E, neurotrophic diyne tetraols isolated from the Okinawan sponge Petrosia strongylata. Tetrahedron 2013. [DOI: 10.1016/j.tet.2012.10.063] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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41
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Molinski TF, Morinaka BI. INTEGRATED APPROACHES TO THE CONFIGURATIONAL ASSIGNMENT OF MARINE NATURAL PRODUCTS. Tetrahedron 2012; 68:9307-9343. [PMID: 23814320 PMCID: PMC3694619 DOI: 10.1016/j.tet.2011.12.070] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Tadeusz F. Molinski
- Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Drive MC0358, La Jolla, CA, 92093
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive MC0358, La Jolla, CA, 92093
| | - Brandon I. Morinaka
- Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Drive MC0358, La Jolla, CA, 92093
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42
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Xing Y, Hande SM, Kishi Y. Photochemistry of Mycolactone A/B, the Causative Toxin of Buruli Ulcer. J Am Chem Soc 2012; 134:19234-9. [DOI: 10.1021/ja309215m] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yalan Xing
- Department
of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138,
United States
| | - Sudhir M. Hande
- Department
of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138,
United States
| | - Yoshito Kishi
- Department
of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138,
United States
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43
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Seco JM, Quiñoá E, Riguera R. Assignment of the Absolute Configuration of Polyfunctional Compounds by NMR Using Chiral Derivatizing Agents. Chem Rev 2012; 112:4603-41. [DOI: 10.1021/cr2003344] [Citation(s) in RCA: 150] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- J. M. Seco
- Department of Organic
Chemistry and Center for Research in Biological
Chemistry and Molecular Materials (CIQUS), University of Santiago
de Compostela, E-15782 Santiago de Compostela, Spain
| | - E. Quiñoá
- Department of Organic
Chemistry and Center for Research in Biological
Chemistry and Molecular Materials (CIQUS), University of Santiago
de Compostela, E-15782 Santiago de Compostela, Spain
| | - R. Riguera
- Department of Organic
Chemistry and Center for Research in Biological
Chemistry and Molecular Materials (CIQUS), University of Santiago
de Compostela, E-15782 Santiago de Compostela, Spain
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44
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Li X, Burrell CE, Staples RJ, Borhan B. Absolute configuration for 1,n-glycols: a nonempirical approach to long-range stereochemical determination. J Am Chem Soc 2012; 134:9026-9. [PMID: 22540177 DOI: 10.1021/ja2119767] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The absolute configurations of 1,n-glycols (n = 2-12, 16) bearing two chiral centers were rapidly determined via exciton-coupled circular dichroism (ECCD) using a tris(pentafluorophenyl)porphyrin (TPFP porphyrin) tweezer system in a nonempirical fashion devoid of chemical derivatization. A unique "side-on" approach of the porphyrin tweezer relative to the diol guest molecule is suggested as the mode of complexation.
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Affiliation(s)
- Xiaoyong Li
- Department of Chemistry, Michigan State University, East Lansing, 48824, United States
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45
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Abstract
Toxic substances that occur in nature have various structures and functions. In fact, the very novelty of their structures and functions sometimes extends far beyond the realm of human imagination, and the capabilities of these compounds are still largely untapped despite the major advances of modern science. In this report we focus on the most recent developments in this field, with a particular emphasis on natural venoms, marine sunscreen, and marine huge molecules.
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Affiliation(s)
- Daisuke Uemura
- 1Department of Chemistry, Faculty of Science, Kanagawa University, Tsuchiya 2946, Hiratsuka, Kanagawa 259-1293, Japan
| | - Chunguang Han
- 2Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8602, Japan
| | - Novriyandi Hanif
- 2Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8602, Japan
| | - Toshiyasu Inuzuka
- 3Life Science Research Center, Gifu University, Yanagido 1-1, Gifu 501-1193, Japan
| | - Norihito Maru
- 1Department of Chemistry, Faculty of Science, Kanagawa University, Tsuchiya 2946, Hiratsuka, Kanagawa 259-1293, Japan
| | - Hirokazu Arimoto
- 4Graduate School of Life Science, Tohoku University, Katahira 2-1-1, Sendai, 981-8555, Japan
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46
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Nilewski C, Carreira EM. Recent Advances in the Total Synthesis of Chlorosulfolipids. European J Org Chem 2012. [DOI: 10.1002/ejoc.201101525] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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47
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A flexible organocatalytic enantioselective synthesis of heptadeca-1-ene-4,6-diyne-3S,8R,9S,10S-tetrol and its congeners. Tetrahedron 2012. [DOI: 10.1016/j.tet.2011.10.058] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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48
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Han C, Yamano Y, Kakiuchi F, Nakamura K, Uemura D. Grubbs carbene complex-catalyzed cleavage of allyl vic-diols to aldehydes with a co-oxidant: application to the selective cleavage of huge marine molecules. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.09.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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49
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Lodewyk MW, Siebert MR, Tantillo DJ. Computational prediction of 1H and 13C chemical shifts: a useful tool for natural product, mechanistic, and synthetic organic chemistry. Chem Rev 2011; 112:1839-62. [PMID: 22091891 DOI: 10.1021/cr200106v] [Citation(s) in RCA: 888] [Impact Index Per Article: 68.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Michael W Lodewyk
- Department of Chemistry, University of California-Davis, Davis, California 95616, USA
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50
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Crich D, Rahaman MY. Synthesis and structural verification of the xylomannan antifreeze substance from the freeze-tolerant Alaskan beetle Upis ceramboides. J Org Chem 2011; 76:8611-20. [PMID: 21955117 DOI: 10.1021/jo201780e] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Tetra-, hexa-, and octasaccharide subunits of the [→4)-β-D-Manp-(1→4)-β-D-Xylp-(1→](n) xylomannan motif proposed as the structure of a novel nonprotein, thermal hysteresis-producing antifreeze substance from the freeze-tolerant Alaskan beetle Upis ceramboides have been accessed by total chemical synthesis. Comparison of their NMR spectral data with data of the isolate lends strong support to the proposed structure. Synthetic tetrasaccharides representing various linkage isomers considered (α- rather than β-manno, and linkage through mannose O3 rather than O4) show more significant chemical shift differences with the isolate and are therefore excluded from further consideration.
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Affiliation(s)
- David Crich
- Department of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States.
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