1
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Hussain A, Afzal O, Yasmin S, Haider N, Altamimi AS, Martinez F, Acree WE, Ramzan M. Preferential Solvation Study of Rosuvastatin in the {PEG400 (1) + Water (2)} Cosolvent Mixture and GastroPlus Software-Based In Vivo Predictions. ACS OMEGA 2023; 8:12761-12772. [PMID: 37065087 PMCID: PMC10099431 DOI: 10.1021/acsomega.2c07968] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 03/20/2023] [Indexed: 06/19/2023]
Abstract
Rosuvastatin (RST) is a poorly water-soluble drug responsible for limited in vivo dissolution and subsequently low oral systemic absorption (poor bioavailability). The mole fraction solubility values of RST in various ratios of binary mixtures "{PEG400 (1) + water (2)}" at 298.15 K were employed to investigate the preferential solvation (PS) of RST (3) by the binary components. Moreover, the GastroPlus program predicted the drug dissolution/absorption rates, plasma drug concentration, and compartmental regional drug absorbed from a conventional tablet as compared to the RST-loaded (PEG400 + water) mixture (at x 1 = 0.5) in healthy subjects (considering the fast condition). Fedors' method was adopted to estimate the values of molar volume (314.8 cm3·mol-1) and Hildebrand solubility parameter (28.08 MPa1/2) of RST. The results of inverse Kirkwood-Buff integrals showed the PS of RST by PEG400 as observed in all studied ratios of the binary mixture. The highest PS value (δx 1,3 = 1.65 × 10-2) for RST by PEG400 was attained at x 1 = 0.5. Finally, the GastroPlus program predicted the maximum dissolution rate [20 mg within 15 min as compared to pure RST (1.5 mg within 15 min)]. Moreover, the program predicted increased in vivo oral absorption (1.2 μg/mL) and enhanced regional absorption (95.3%) of RST from upper segments of the gastrointestinal tract for the RST-loaded PEG400 + water mixture in humans as compared to conventional tablets (87.5% as total regional absorption and 0.88 μg/mL as in vivo absorption). Hence, the present binary system ferrying RST can be a promising strategy to control systemic dyslipidemia after oral or subcutaneous administration.
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Affiliation(s)
- Afzal Hussain
- Department
of Pharmaceutics, College of Pharmacy, King
Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Obaid Afzal
- Department
of Pharmaceutical Chemistry, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al Kharj 11942, Saudi Arabia
| | - Sabina Yasmin
- Department
of Pharmaceutical Chemistry, College of Pharmacy, King Khalid University, Abha 61421, Saudi Arabia
| | - Nazima Haider
- Department
of Pathology, College of Medicine, King
Khalid University, Abha 61421, Saudi Arabia
| | | | - Fleming Martinez
- Grupo
de Investigaciones Farmacéutico-Fisicoquímicas, Departamento
de Farmacia, Universidad Nacional de Colombia,
Sede Bogotá, Cra
30 No. 45-03, Bogotá D. C. 111321, Colombia
| | - William E. Acree
- Department
of Chemistry, University of North Texas, Denton, Texas 76203-5070, United States
| | - Mohhammad Ramzan
- School
of Pharmacy, Lovely Professional University, Jalandhar-Delhi, Grand Trunk Road, Phagwara, Punjab 144001, India
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2
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Jaunet-Lahary T, Shimamura T, Hayashi M, Nomura N, Hirasawa K, Shimizu T, Yamashita M, Tsutsumi N, Suehiro Y, Kojima K, Sudo Y, Tamura T, Iwanari H, Hamakubo T, Iwata S, Okazaki KI, Hirai T, Yamashita A. Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Nat Commun 2023; 14:1730. [PMID: 37012268 PMCID: PMC10070484 DOI: 10.1038/s41467-023-36883-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Accepted: 02/20/2023] [Indexed: 04/05/2023] Open
Abstract
An oxalate-degrading bacterium in the gut microbiota absorbs food-derived oxalate to use this as a carbon and energy source, thereby reducing the risk of kidney stone formation in host animals. The bacterial oxalate transporter OxlT selectively uptakes oxalate from the gut to bacterial cells with a strict discrimination from other nutrient carboxylates. Here, we present crystal structures of oxalate-bound and ligand-free OxlT in two distinct conformations, occluded and outward-facing states. The ligand-binding pocket contains basic residues that form salt bridges with oxalate while preventing the conformational switch to the occluded state without an acidic substrate. The occluded pocket can accommodate oxalate but not larger dicarboxylates, such as metabolic intermediates. The permeation pathways from the pocket are completely blocked by extensive interdomain interactions, which can be opened solely by a flip of a single side chain neighbouring the substrate. This study shows the structural basis underlying metabolic interactions enabling favourable symbiosis.
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Affiliation(s)
- Titouan Jaunet-Lahary
- Research Center for Computational Science, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki, 444-8585, Japan
| | - Tatsuro Shimamura
- Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan.
| | - Masahiro Hayashi
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan
| | - Norimichi Nomura
- Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan
| | - Kouta Hirasawa
- Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan
| | | | | | - Naotaka Tsutsumi
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan
- School of Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan
| | - Yuta Suehiro
- School of Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan
| | - Keiichi Kojima
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan
| | - Yuki Sudo
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan
| | - Takashi Tamura
- Graduate School of Environmental and Life Sciences, Okayama University, Okayama, 700-8530, Japan
| | - Hiroko Iwanari
- Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, 153-8904, Japan
| | - Takao Hamakubo
- Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, 153-8904, Japan
| | - So Iwata
- Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan
| | - Kei-Ichi Okazaki
- Research Center for Computational Science, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki, 444-8585, Japan.
| | | | - Atsuko Yamashita
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan.
- RIKEN SPring-8 Center, Sayo, 679-5148, Japan.
- School of Pharmaceutical Sciences, Okayama University, Okayama, 700-8530, Japan.
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3
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Photoelectron Spectroscopy of OH−-Anion–Water Clusters Generated by Ultrasonic Nebulizer. Int J Mol Sci 2022; 23:ijms23084175. [PMID: 35456992 PMCID: PMC9030742 DOI: 10.3390/ijms23084175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 04/04/2022] [Accepted: 04/06/2022] [Indexed: 11/20/2022] Open
Abstract
Investigating molecules in the gas phase is the only way to discover their intrinsic molecular properties; however, it is challenging to produce the gaseous phase of large-molecule chemicals. Thermal evaporation is typically used to convert molecules into gases, but it is still challenging to study ionic molecules in solutions in the gas phase. Electrospray ionization is one of the best methods to generate molecules in the gas phase, and it is uniquely capable of studying large biomolecules, including proteins. However, the molecular temperature required to study the spectroscopic properties of the molecules is very high. In this study, we developed a new, simple evaporation method using an ultrasonic nebulizer to obtain gas-phase molecules. Using this new equipment, we observed OH− anions and their water clusters in the gas phase and obtained their photoelectron spectra. We observed that the vertical electron-detachment energy (VDE) of OH− was 1.90 ± 0.05 eV and the VDEs of its water clusters and OH− (H2O)n (n = 1–2) decreased to 1.50 ± 0.05 eV (n = 1) and 1.30 ± 0.05 eV (n = 2), respectively.
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4
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Dumpala RMR, Sharma S, Boda A, Rawat N, Ali SM. The aqueous interaction of neodymium with two omni existent biomoieties - a mechanistic understanding by experimental and theoretical studies. Dalton Trans 2021; 50:16191-16204. [PMID: 34724008 DOI: 10.1039/d1dt02939h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Neodymium (Nd), a technologically important metal ion, has emerged as a major contaminant in aquatic systems in recent years owing to its surge in electrical and electronic applications as a permanent magnet. The chelating molecules present in hydro- and biospheres could substantially enhance its absorption and lead to transportation and migration of Nd from the source. The mechanistic understanding of the Nd interaction with naturally relevant biomoieties present in flora and fauna is of primitive importance to estimate the toxicological effects of the metal ion. The present studies aimed at understanding the aquatic interaction of Nd with two biomoieties namely pyrazine-2-carboxylic acid (P2C) and pyrazine-2,3-dicarboxylic acid (P23C) by multiple experimental determinations and theoretical estimations. Potentiometry and spectrophotometry were employed to determine the aquatic speciation and thermodynamic stability of the complexes. Both techniques supported the formation of MLi (i = 1-4) complexes by Nd(III) with P2C and MLi (i = 1-3) complexes with P23C. The Nd-P23C complexes are more stable than the Nd-P2C complexes for ML formation, while the opposite trend is observed for the ML2 and ML3 complexes. Titration calorimetry was used to determine the enthalpies of complexation which was found to be exothermic and majorly favored by entropy contributions. The formation of the Nd(III)-P2C complexes is more exothermic than that of the respective Nd(III)-P23C complexes. Density functional theory was employed for the geometry optimization of the predicted complexes and for the estimation of the bond distances and partial charges on the coordinating atoms in the optimized geometries. Experimental insights provide crucial inputs at the macro (thermodynamic) level and theoretical calculations help in understanding the complexation process at the molecular level.
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Affiliation(s)
| | - Shikha Sharma
- Radiochemistry Division, Bhabha Atomic Research Centre, Mumbai, 400085, India.
| | - Anil Boda
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Neetika Rawat
- Radiochemistry Division, Bhabha Atomic Research Centre, Mumbai, 400085, India.
| | - Sk Musharaf Ali
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
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5
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Hou GL, Wang XB. Molecular Specificity and Proton Transfer Mechanisms in Aerosol Prenucleation Clusters Relevant to New Particle Formation. Acc Chem Res 2020; 53:2816-2827. [PMID: 33108162 DOI: 10.1021/acs.accounts.0c00444] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Atmospheric aerosol particles influence the Earth's radiative energy balance and cloud properties, thus impacting the air quality, human health, and Earth's climate change. Because of the important scientific and overarching practical implications of aerosols, the past two decades have seen extensive research efforts, with emphasis on the chemical compositions and underlying mechanisms of aerosol formation. It has been recognized that new particle formation (NPF) contributes up to 50% of atmospheric aerosols. Nowadays, the general consensus is that NPF proceeds via two distinct stages: the nucleation from gaseous precursors to form critical nuclei of sub-1-2 nm size, and the subsequent growth into large particles. However, a fundamental understanding of both the NPF process and molecular-level characterization of the critical size aerosol clusters is still largely missing, hampering the efforts in developing reliable and predictive aerosol nucleation and climate models.Both field measurements and laboratory experiments have gathered convincing evidence about the importance of volatile organic compounds (VOCs) in enhancing the nucleation and growth of aerosol particles. Numerous and abundant small clusters composed of sulfuric acid or bisulfate ion and organic molecules have been shown to exist in ∼2 nm sized aerosol particles. In particular, kinetic studies indicated the formation of clusters with one H2SO4 and one or two organics being the rate-limiting step.This Account discusses our effort in developing an integrated approach, which involves the laboratory cluster synthesis via electrospray ionization, size and composition analysis via mass spectrometry, photoelectron spectroscopic characterization, and quantum mechanics based theoretical modeling, to investigate the structures, energetics, and thermodynamics of the aerosol prenucleation clusters relevant to NPF. We have been focusing on the clusters formed between H2SO4 or HSO4- and the organics from oxidation of both biogenic and anthropogenic emissions. We illustrated the significant thermodynamic advantage by involving organic acids in the formation and growth of aerosol clusters. We revealed that the functional groups in the organics play critical roles in promoting NPF process. The enhanced roles were quantified explicitly for specific functional groups, establishing a Molecular Scale that ranks highly hierarchic intermolecular interactions critical to aerosol formation. The different cluster formation pathways, probably mimicking the various polluted industrial environments, that involve cis-pinonic and cis-pinic acids were unveiled as well. Furthermore, one intriguing fundamental phenomenon on the unusual protonation pattern, which violates the gas-phase acidity (proton affinity) prediction, was discovered to be common in sulfuric acid-organic clusters. The mechanism underlying the phenomenon has been rationalized by employing the temperature-dependent experiments of sulfuric acid-formate/halide model clusters, which could explain the high stability of the sulfuric acid containing aerosol clusters. Our work provides critical molecular-level information to shed light on the initial steps of nucleation of common atmospheric precursors and benchmarks critical data for large-scale theoretical modeling to further address problems of environmental interest.
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Affiliation(s)
- Gao-Lei Hou
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
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6
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Abbott HE, Hey JC, Britton MM, Johnston RL. Effects of Hydration on the Conformational Behavior of Flexible Molecules with Two Charge Centers. J Phys Chem A 2020; 124:5323-5330. [PMID: 32501011 DOI: 10.1021/acs.jpca.0c02004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The hydration behavior of alkyl-diammonium di-cations and alkyl-dicarboxylate di-anions, of varying alkyl chain length, was examined using basin-hopping (BH) global optimization techniques. For every di-ion investigated, a conformational transition from linear to folded is observed at a critical hydration number, n*, specific to each di-ion. A stepwise hydration study has been undertaken for alkyl-dicarboxylate di-anions in finite water clusters containing 1-12 water molecules, and low-energy structures have been examined for larger water clusters. An even number of carbons in the alkyl chain gives rise to more stable conformations in unhydrated, implicitly solvated, and explicitly solvated conditions. This work provides valuable information on how the hydration of ammonium and carboxylate ions influence larger biomolecules' conformations.
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Affiliation(s)
- Helen E Abbott
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - John C Hey
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Melanie M Britton
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Roy L Johnston
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
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7
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Dumpala RMR, Boda A, Srivastava A, Kumar P, Rawat N, Ali SM. Aquatic interaction of uranium with two naturally ubiquitous pyrazine compounds: Speciation studies by experiment and theory. CHEMOSPHERE 2020; 249:126116. [PMID: 32058132 DOI: 10.1016/j.chemosphere.2020.126116] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 01/31/2020] [Accepted: 02/03/2020] [Indexed: 06/10/2023]
Abstract
The present studies interpret the speciation of uranyl (UO22+) with the most ubiquitous class of natural species named pyrazines in terms of stability, speciation and its identification, thermodynamics, spectral properties determined by a range of experimental techniques and further evidenced by theoretical insights. UO22+ forms ML and ML2 kind of species with a qualitative detection of ML3 species, while the ESI-MS identified the formation of all the complexes including ML3. Both the ligands act as bidentate chelators with a difference in ring size and coordinating atoms in the complex formed. The ML3 complexes involve the third ligand participation as monodentate via carboxylate only due to the restricted coordination number and space around the UO22+ ion to accommodate three ligand molecules in its primary coordination sphere. All the complexes are found to be endothermic and purely entropy driven formations. The complex formations showed redshift in the absorption spectra and the shift was further enhanced from ML to ML2 formation. The UO22+ ion redox properties are used to explore the redox potential and heterogeneous electron-transfer kinetic parameters as a function of pH and concentration of UO22+ in presence of pyrazine carboxylates. Interestingly, the cyclic voltammograms identified the ligands also as redox sensitive. The theoretical calculation gave inputs to understand the complex formation at the molecular level with major emphasis on geometry optimization, energetics, bonding parameters, molecular orbital diagrams and bond critical point analyses. The experimental observations in combination with theoretical addendum provided detailed knowledge on the interaction of UO22+ with pyrazine-2-carboxylate and pyrazine-2,3-dicarboxylates.
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Affiliation(s)
| | - Anil Boda
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Ashutosh Srivastava
- Radioanalytical Chemistry Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Pranaw Kumar
- Fuel Chemistry Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Neetika Rawat
- Radioanalytical Chemistry Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Sk Musharaf Ali
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
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8
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Teschke O, Roberto de Castro J, Soares DM. Imaging Ion Pairs Forming Structural Arrangements in Interfacial Regions. ACS OMEGA 2019; 4:15684-15693. [PMID: 31572871 PMCID: PMC6761755 DOI: 10.1021/acsomega.9b02299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Accepted: 08/29/2019] [Indexed: 06/10/2023]
Abstract
A technique to image ion pairs in solution is reported. We investigated structural and dynamic properties of ion-pair distributions deposited on highly oriented pyrolytic graphite (HOPG) surfaces in electrolyte solutions. Atomic force microscopy images of HOPG immersed in NaCl and KCl solutions display regular arrangements on top of the hexagonal carbon rings forming the HOPG atomic structure. These arrangements are the result of the low value of the aqueous interfacial dielectric constant (εr ≈ 3-11). The measured ion-pair radius is a function of the salt present in the solution; for KCl, the ion-pair radius is equal or smaller than 0.42 nm; for NaCl, the ion-pair radius is 0.36 nm. A comparison of these values with their crystalline lattice dimensions indicates that both KCl and NaCl ion pairs in solution at the HOPG/solution interfacial region exist as tight contact ion pairs in quasistationary distributions. The NaCl ion-pair distribution forms an aligned arrangement, and the KCl distribution is formed by intercalated pairs.
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Affiliation(s)
- Omar Teschke
- E-mail: . Phone: 55 (19) 3521-4148Fax: 55 (19) 3521-5637
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9
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Dumpala RMR, Rawat N, Boda A, Ali SM, Tomar BS. Structural, luminescence, thermodynamic and theoretical studies on mononuclear complexes of Eu(III) with pyridine monocarboxylate-N-oxides in aqueous solution. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 190:150-163. [PMID: 28922641 DOI: 10.1016/j.saa.2017.09.013] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Revised: 08/21/2017] [Accepted: 09/08/2017] [Indexed: 06/07/2023]
Abstract
The mononuclear complexes formed by Eu(III) with three isomeric pyridine monocarboxylate-N-oxides namely picolinic acid-N-oxide (PANO), nicotinic acid-N-oxide (NANO) and isonicotinic acid-N-oxide (IANO) in aqueous solutions were studied by potentiometry, luminescence spectroscopy and isothermal titration calorimetry (ITC) to determine the speciation, coordination, luminescence properties and thermodynamic parameters of the complexes formed during the course of the reaction. More stable six membered chelate complexes with stoichiometry (MLi, i=1-4) are formed by Eu(III) with PANO while non chelating ML and ML2 complexes are formed by NANO and IANO. The stability of Eu(III) complexes follow the order PANO>IANO>NANO. The ITC studies inferred an endothermic and innersphere complex formation of Eu(III)-PANO and Eu(III)-IANO whereas an exothermic and outer-sphere complex formation for Eu(III)-NANO. The luminescence life time data further supported the ITC results. Density functional theoretical calculations were carried out to optimize geometries of the complexes and to estimate the energies, structural parameters (bond distances, bond angles) and charges on individual atoms of the same. Theoretical approximations are found to be in good agreement with the experimental observations.
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Affiliation(s)
- Rama Mohana Rao Dumpala
- Radioanalytical Chemistry Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - Neetika Rawat
- Radioanalytical Chemistry Division, Bhabha Atomic Research Centre, Mumbai 400085, India.
| | - Anil Boda
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Sk Musharaf Ali
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - B S Tomar
- Radioanalytical Chemistry Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
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10
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Kroutil O, Předota M, Kabeláč M. Force field parametrization of hydrogenoxalate and oxalate anions with scaled charges. J Mol Model 2017; 23:327. [DOI: 10.1007/s00894-017-3490-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Accepted: 09/28/2017] [Indexed: 12/31/2022]
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11
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Warneke J, Hou GL, Aprà E, Jenne C, Yang Z, Qin Z, Kowalski K, Wang XB, Xantheas SS. Electronic Structure and Stability of [B12X12]2– (X = F–At): A Combined Photoelectron Spectroscopic and Theoretical Study. J Am Chem Soc 2017; 139:14749-14756. [DOI: 10.1021/jacs.7b08598] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jonas Warneke
- Physical
Sciences Division, Pacific Northwest National Laboratory, 902 Battelle
Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Gao-Lei Hou
- Physical
Sciences Division, Pacific Northwest National Laboratory, 902 Battelle
Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Edoardo Aprà
- Environmental
Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352 United States
| | - Carsten Jenne
- Anorganische
Chemie, Fakultät für Mathematik und Naturwissenschaften, Bergische Universität Wuppertal, Gaußstraße 20, 42119 Wuppertal, Germany
| | - Zheng Yang
- Physical
Sciences Division, Pacific Northwest National Laboratory, 902 Battelle
Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Zhengbo Qin
- Physical
Sciences Division, Pacific Northwest National Laboratory, 902 Battelle
Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Karol Kowalski
- Environmental
Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352 United States
| | - Xue-Bin Wang
- Physical
Sciences Division, Pacific Northwest National Laboratory, 902 Battelle
Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Sotiris S. Xantheas
- Advanced
Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box
999, MS K1-83, Richland, Washington 99352, United States
- Department
of Chemistry, University of Washington, Seattle, Washington 98195, United States
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12
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Wang XB. Cluster Model Studies of Anion and Molecular Specificities via Electrospray Ionization Photoelectron Spectroscopy. J Phys Chem A 2017; 121:1389-1401. [PMID: 28060511 DOI: 10.1021/acs.jpca.6b09784] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Ion specificity, a widely observed macroscopic phenomenon in condensed phases and at interfaces, is a fundamental chemical physics issue. Herein we report our recent studies of such effects using cluster models in an "atom-by-atom" and "molecule-by-molecule" fashion not possible with the condensed-phase methods. We use electrospray ionization (ESI) to generate molecular and ionic clusters to simulate key molecular entities involved in local binding regions and characterize them by employing negative ion photoelectron spectroscopy (NIPES). Inter- and intramolecular interactions and binding configurations are directly obtained as functions of the cluster size and composition, providing molecular-level descriptions and characterization over the local active sites that play crucial roles in determining the solution chemistry and condensed-phase phenomena. The topics covered in this article are relevant to a wide range of research fields from ion specific effects in electrolyte solutions, ion selectivity/recognition in normal functioning of life, to molecular specificity in aerosol particle formation, as well as in rational material design and synthesis.
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Affiliation(s)
- Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory , P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
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13
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Dumpala RMR, Rawat N, Tomar BS. Protonation of Pyridine Monocarboxylate-N-Oxides - Determination of Thermodynamic, Absorbance and Ion Interaction Parameters. ChemistrySelect 2017. [DOI: 10.1002/slct.201601322] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
| | - Neetika Rawat
- Radioanalytical Chemistry Division; Bhabha Atomic Research Centre; Mumbai India 400085
| | - Bhupendra S. Tomar
- Radioanalytical Chemistry Division; Bhabha Atomic Research Centre; Mumbai India 400085
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14
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Structure and dynamics of solvated hydrogenoxalate and oxalate anions: a theoretical study. J Mol Model 2016; 22:210. [DOI: 10.1007/s00894-016-3075-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Accepted: 07/27/2016] [Indexed: 11/26/2022]
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15
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Hou GL, Kong XT, Valiev M, Jiang L, Wang XB. Probing the early stages of solvation of cis-pinate dianions by water, acetonitrile, and methanol: a photoelectron spectroscopy and theoretical study. Phys Chem Chem Phys 2016; 18:3628-37. [DOI: 10.1039/c5cp05974g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoelectron spectroscopy and theoretical studies indicate the coexistence of symmetric and asymmetric solvated clusters for cis-pinate dianions.
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Affiliation(s)
- Gao-Lei Hou
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Xiang-Tao Kong
- State Key Laboratory of Molecular Reaction Dynamics
- Collaborative Innovation Center of Chemistry for Energy and Materials
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
| | - Marat Valiev
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Ling Jiang
- State Key Laboratory of Molecular Reaction Dynamics
- Collaborative Innovation Center of Chemistry for Energy and Materials
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
| | - Xue-Bin Wang
- Pacific Northwest National Laboratory
- Richland
- USA
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16
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Sen A, Matthews EM, Hou GL, Wang XB, Dessent CEH. Photoelectron spectroscopy of hexachloroplatinate-nucleobase complexes: Nucleobase excited state decay observed via delayed electron emission. J Chem Phys 2015; 143:184307. [DOI: 10.1063/1.4935171] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Ananya Sen
- Department of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom
| | - Edward M. Matthews
- Department of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom
| | - Gao-Lei Hou
- Physical Sciences Division, Pacific Northwest National Laboratory, MS K8-88, P.O. Box 999, Richland, Washington 99352, USA
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, MS K8-88, P.O. Box 999, Richland, Washington 99352, USA
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17
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Deng S, Chen J, Nie J, Liu S, Duan X, Xiao W, Zhang N. Cubane-like (COO−)2(H2O)6 anion water clusters: New building blocks of two trinodal supramolecular networks with mixed-connectivity. INORG CHEM COMMUN 2015. [DOI: 10.1016/j.inoche.2015.03.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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18
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19
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20
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Mateus P, Delgado R, André V, Duarte MT. Dicarboxylate Recognition Properties of a Dinuclear Copper(II) Cryptate. Inorg Chem 2014; 54:229-40. [DOI: 10.1021/ic502230q] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Pedro Mateus
- Instituto de Tecnologia Química
e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Rita Delgado
- Instituto de Tecnologia Química
e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Vânia André
- Centro de Química
Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Avenida Rovisco Pais, 1049-001 Lisboa, Portugal
| | - M. Teresa Duarte
- Centro de Química
Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Avenida Rovisco Pais, 1049-001 Lisboa, Portugal
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21
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Werner J, Julin J, Dalirian M, Prisle NL, Öhrwall G, Persson I, Björneholm O, Riipinen I. Succinic acid in aqueous solution: connecting microscopic surface composition and macroscopic surface tension. Phys Chem Chem Phys 2014; 16:21486-95. [PMID: 25182698 DOI: 10.1039/c4cp02776k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The water-vapor interface of aqueous solutions of succinic acid, where pH values and bulk concentrations were varied, has been studied using surface sensitive X-ray photoelectron spectroscopy (XPS) and molecular dynamics (MD) simulations. It was found that succinic acid has a considerably higher propensity to reside in the aqueous surface region than its deprotonated form, which is effectively depleted from the surface due to the two strongly hydrated carboxylate groups. From both XPS experiments and MD simulations a strongly increased concentration of the acid form in the surface region compared to the bulk concentration was found and quantified. Detailed analysis of the surface of succinic acid solutions at different bulk concentrations led to the conclusion that succinic acid saturates the aqueous surface at high bulk concentrations. With the aid of MD simulations the thickness of the surface layer could be estimated, which enabled the quantification of surface concentration of succinic acid as a multiple of the known bulk concentration. The obtained enrichment factors were successfully used to model the surface tension of these binary aqueous solutions using two different models that account for the surface enrichment. This underlines the close correlation of increased concentration at the surface relative to the bulk and reduced surface tension of aqueous solutions of succinic acid. The results of this study shed light on the microscopic origin of surface tension, a macroscopic property. Furthermore, the impact of the results from this study on atmospheric modeling is discussed.
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Affiliation(s)
- Josephina Werner
- Department of Physics and Astronomy, Uppsala University, P.O. Box 516, SE-751 20 Uppsala, Sweden.
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22
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Deng SHM, Hou GL, Kong XY, Valiev M, Wang XB. Examining the Amine Functionalization in Dicarboxylates: Photoelectron Spectroscopy and Theoretical Studies of Aspartate and Glutamate. J Phys Chem A 2014; 118:5256-62. [PMID: 24979328 DOI: 10.1021/jp505439b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shihu H. M. Deng
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Gao-Lei Hou
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Xiang-Yu Kong
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Marat Valiev
- Environmental
Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352, United States
| | - Xue-Bin Wang
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
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23
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Verlet JRR, Horke DA, Chatterley AS. Excited states of multiply-charged anions probed by photoelectron imaging: riding the repulsive Coulomb barrier. Phys Chem Chem Phys 2014; 16:15043-52. [DOI: 10.1039/c4cp01667j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent progress towards understanding the repulsive Coulomb barrier in multiply-charged anion using photoelectron spectroscopy is discussed.
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Affiliation(s)
| | - Daniel A. Horke
- Center for Free-Electron Laser Science
- DESY
- 22607 Hamburg, Germany
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24
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Wanko M, Wende T, Montes Saralegui M, Jiang L, Rubio A, Asmis KR. Solvent-mediated folding of dicarboxylate dianions: aliphatic chain length dependence and origin of the IR intensity quenching. Phys Chem Chem Phys 2013; 15:20463-72. [PMID: 24173210 DOI: 10.1039/c3cp52824c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
We combine infrared photodissociation spectroscopy with quantum chemical calculations to characterize the hydration behavior of microsolvated dicarboxylate dianions, (CH2)m(COO(-))2·(H2O)n, as a function of the aliphatic chain length m. We find evidence for solvent-mediated folding transitions, signaled by the intensity quenching of the symmetric carboxylate stretching modes, for all three species studied (m = 2, 4, 8). The number of water molecules required to induce folding increases monotonically with the chain length and is n = 9-12, n = 13, and n = 18-19 for succinate (m = 2), adipate (m = 4), and sebacate (m = 8), respectively. In the special case of succinate, the structural transition is complicated by the possibility of bridging water molecules that bind to both carboxylates with merely minimal chain deformation. On the basis of vibrational calculations on a set of model systems, we identify the factors responsible for intensity quenching. In particular, we find that the effect of hydrogen bonds on the carboxylate stretching mode intensities is strongly orientation dependent.
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Affiliation(s)
- Marius Wanko
- Nano-Bio Spectroscopy Group and ETSF Scientific Development Centre, Departamento de Física de Materiales, Universidad del País Vasco, Centro de Física de Materiales CSIC-UPV/EHU-MPC and DIPC, Av. Tolosa 72, 20018 San Sebastián, Spain.
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25
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Luxford TF, Milner EM, Yoshikawa N, Bullivant C, Dessent CE. Complexation of carboxylate anions with the arginine gas-phase amino acid: Effects of chain length on the geometry of extended ion binding. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.05.040] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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26
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Jahangiri S, Mercer SM, Jessop PG, Peslherbe GH. Computational Investigation of the Hydration of Alkyl Diammonium Chlorides and Their Effect on THF/Water Phase Separation. J Phys Chem B 2013; 117:8010-7. [DOI: 10.1021/jp403984q] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Soran Jahangiri
- Centre for Research in Molecular
Modeling (CERMM) and Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke Street West,
Montréal, Québec, Canada H4B 1R6
| | - Sean M. Mercer
- Department of Chemistry, Queen’s University, 90 Bader Lane, Kingston,
Ontario, Canada K7L 3N6
| | - Philip G. Jessop
- Department of Chemistry, Queen’s University, 90 Bader Lane, Kingston,
Ontario, Canada K7L 3N6
| | - Gilles H. Peslherbe
- Centre for Research in Molecular
Modeling (CERMM) and Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke Street West,
Montréal, Québec, Canada H4B 1R6
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27
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Hou GL, Lin W, Deng SHM, Zhang J, Zheng WJ, Paesani F, Wang XB. Negative Ion Photoelectron Spectroscopy Reveals Thermodynamic Advantage of Organic Acids in Facilitating Formation of Bisulfate Ion Clusters: Atmospheric Implications. J Phys Chem Lett 2013; 4:779-785. [PMID: 26281932 DOI: 10.1021/jz400108y] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Recent lab and field measurements have indicated critical roles of organic acids in enhancing new atmospheric aerosol formation. Such findings have stimulated theoretical studies with the aim of understanding the interaction of organic acids with common aerosol nucleation precursors like bisulfate (HSO4(-)). We report a combined negative ion photoelectron spectroscopic and theoretical investigation of molecular clusters formed by HSO4(-) with succinic acid (SUA, HO2C(CH2)2CO2H), HSO4(-)(SUA)n (n = 0-2), along with HSO4(-)(H2O)n and HSO4(-)(H2SO4)n. It is found that one SUA molecule can stabilize HSO4(-) by ca. 39 kcal/mol, three times the corresponding value that one water molecule is capable of (ca. 13 kcal/mol). Molecular dynamics simulations and quantum chemical calculations reveal the most plausible structures of these clusters and attribute the stability of these clusters to the formation of strong hydrogen bonds. This work provides direct experimental evidence showing significant thermodynamic advantage by involving organic acid molecules to promote formation and growth in bisulfate clusters and aerosols.
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Affiliation(s)
- Gao-Lei Hou
- †Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Wei Lin
- §Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | | | | | - Wei-Jun Zheng
- †Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Francesco Paesani
- §Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
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28
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Demireva M, O’Brien JT, Williams ER. Water-Induced Folding of 1,7-Diammoniumheptane. J Am Chem Soc 2012; 134:11216-24. [DOI: 10.1021/ja303313p] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Maria Demireva
- Department of Chemistry, University of California, Berkeley 94720-1460, United States
| | - Jeremy T. O’Brien
- Department of Chemistry, University of California, Berkeley 94720-1460, United States
| | - Evan R. Williams
- Department of Chemistry, University of California, Berkeley 94720-1460, United States
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29
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Luo G, Xiong H, Fu Z, Dai J. Observation of the novel “three-pointed star” cage-like (H2O)5 cluster in a polymeric solid {[Ag2(bpp)2(H2O)2](chd)·9H2O} n. Sci China Chem 2012. [DOI: 10.1007/s11426-012-4581-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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30
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Asmis KR, Neumark DM. Vibrational spectroscopy of microhydrated conjugate base anions. Acc Chem Res 2012; 45:43-52. [PMID: 21675714 DOI: 10.1021/ar2000748] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Conjugate-base anions are ubiquitous in aqueous solution. Understanding the hydration of these anions at the molecular level represents a long-standing goal in chemistry. A molecular-level perspective on ion hydration is also important for understanding the surface speciation and reactivity of aerosols, which are a central component of atmospheric and oceanic chemical cycles. In this Account, as a means of studying conjugate-base anions in water, we describe infrared multiple-photon dissociation spectroscopy on clusters in which the sulfate, nitrate, bicarbonate, and suberate anions are hydrated by a known number of water molecules. This spectral technique, used over the range of 550-1800 cm(-1), serves as a structural probe of these clusters. The experiments follow how the solvent network around the conjugate-base anion evolves, one water molecule at a time. We make structural assignments by comparing the experimental infrared spectra to those obtained from electronic structure calculations. Our results show how changes in anion structure, symmetry, and charge state have a profound effect on the structure of the solvent network. Conversely, they indicate how hydration can markedly affect the structure of the anion core in a microhydrated cluster. Some key results include the following. The first few water molecules bind to the anion terminal oxo groups in a bridging fashion, forming two anion-water hydrogen bonds. Each oxo group can form up to three hydrogen bonds; one structural result, for example, is the highly symmetric, fully coordinated SO(4)(2-)(H(2)O)(6) cluster, which only contains bridging water molecules. Adding more water molecules results in the formation of a solvent network comprising water-water hydrogen bonding in addition to hydrogen bonding to the anion. For the nitrate, bicarbonate, and suberate anions, fewer bridging sites are available, namely, three, two, and one (per carboxylate group), respectively. As a result, an earlier onset of water-water hydrogen bonding is observed. When there are more than three hydrating water molecules (n > 3), the formation of a particularly stable four-membered water ring is observed for hydrated nitrate and bicarbonate clusters. This ring binds in either a side-on (bicarbonate) or top-on (nitrate) fashion. In the case of bicarbonate, additional water molecules then add to this water ring rather than directly to the anion, indicating a preference for surface hydration. In contrast, doubly charged sulfate dianions are internally hydrated and characterized by the closing of the first hydration shell at n = 12. The situation is different for the (-)O(2)C(CH(2))(6)CO(2-) (suberate) dianion, which adapts to the hydration network by changing from a linear to a folded structure at n > 15. This change is driven by the formation of additional solute-solvent hydrogen bonds.
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Affiliation(s)
- Knut R. Asmis
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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31
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Luo GG, Wu DL, Wu JH, Xia JX, Liu L, Dai JC. Direct observation of conformational change of adipate dianions encapsulated in water clusters. CrystEngComm 2012. [DOI: 10.1039/c2ce25200g] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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32
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Wende T, Wanko M, Jiang L, Meijer G, Asmis KR, Rubio A. Spektroskopische Charakterisierung der lösungsmittelinduzierten Faltung von Dicarboxylatdianionen. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201006485] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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33
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Wende T, Wanko M, Jiang L, Meijer G, Asmis KR, Rubio A. Spectroscopic Characterization of Solvent-Mediated Folding in Dicarboxylate Dianions. Angew Chem Int Ed Engl 2011; 50:3807-10. [DOI: 10.1002/anie.201006485] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2010] [Indexed: 11/11/2022]
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34
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Milner EM, Nix MGD, Dessent CEH. Evidence for hydrogen bond network formation in microsolvated clusters of Pt(CN)42−: collision induced dissociation studies of Pt(CN)42−·(H2O)nn = 1–4, and Pt(CN)42−·(MeCN)mm = 1, 2 cluster ions. Phys Chem Chem Phys 2011; 13:18379-85. [DOI: 10.1039/c1cp21538h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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35
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Xing XP, Wang XB, Wang LS. Photoelectron Imaging of Doubly Charged Anions, −O2C(CH2)nCO2− (n = 2−8): Observation of Near 0 eV Electrons Due to Secondary Dissociative Autodetachment. J Phys Chem A 2010; 114:4524-30. [DOI: 10.1021/jp1011523] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xiao-Peng Xing
- Department of Physics, Washington State University, 2710 University Drive, Richland, Washington 99354, Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, MS K8-88, Richland, Washington 99352, and Department of Chemistry, Brown University, Providence, Rhode Island 02912
| | - Xue-Bin Wang
- Department of Physics, Washington State University, 2710 University Drive, Richland, Washington 99354, Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, MS K8-88, Richland, Washington 99352, and Department of Chemistry, Brown University, Providence, Rhode Island 02912
| | - Lai-Sheng Wang
- Department of Physics, Washington State University, 2710 University Drive, Richland, Washington 99354, Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, MS K8-88, Richland, Washington 99352, and Department of Chemistry, Brown University, Providence, Rhode Island 02912
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36
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Takahama S, Liu S, Russell LM. Coatings and clusters of carboxylic acids in carbon-containing atmospheric particles from spectromicroscopy and their implications for cloud-nucleating and optical properties. ACTA ACUST UNITED AC 2010. [DOI: 10.1029/2009jd012622] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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37
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Riesová M, Hruska V, Kenndler E, Gas B. Electromigration oscillations occurring in ternary electrolyte systems with complex eigenmobilities, as predicted by theory and ascertained by capillary electrophoresis. J Phys Chem B 2009; 113:12439-46. [PMID: 19705834 DOI: 10.1021/jp811410n] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Chemical oscillations are driven by a gradient of chemical potential and can only develop in systems where the substances are far from chemical equilibrium. We have discovered a new analogous type of oscillations in ternary electrolyte mixtures, which we call electromigration oscillations. They appear in liquid solutions of electrolytes and are associated with the electromigration movement of ions when conducting an electric current. These electromigration oscillations are driven by the electric potential gradient, while the system can be close to chemical equilibrium. The unequivocal criterion for the instability of the electrolyte solution and its ability to oscillate is the existence of complex system eigenmobilities. We show how to calculate the system eigenmobilities by utilizing the linear theory of electromigration and how to identify the complex system eigenmobilities to predict electromigration oscillations. To experimentally prove these electromigration oscillations, we employ a commercially available instrument for capillary electrophoresis. The oscillations start a certain period of time after switching on the driving electric current. The axial concentration profiles of the electrolytes in the capillary attain a nearly periodic pattern with a spatial period in the range of 1-4 mm, with almost constant amplitude. This periodic pattern moves in the electric field with mobility that is equal to the real part of the complex eigenmobility pair. We have found several ternary oscillating electrolytes composed of a base and two acids, of which at least one has higher valence than one in absolute value. All the systems have three system eigenmobilities: one is real and close to zero, and the two others form the complex conjugate pair, the real part of which is far from zero.
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Affiliation(s)
- Martina Riesová
- Charles University in Prague, Faculty of Science, Albertov 2030, Prague 2, Czech Republic
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38
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Wang XB, Jagoda-Cwiklik B, Chi C, Xing XP, Zhou M, Jungwirth P, Wang LS. Microsolvation of the acetate anion [CH3CO2-(H2O)n, n= 1–3]: A photoelectron spectroscopy and ab initio computational study. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.06.074] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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39
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Affiliation(s)
- Xue-Bin Wang
- Department of Physics, Washington State University, Richland, Washington 99354, and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352;
| | - Lai-Sheng Wang
- Department of Physics, Washington State University, Richland, Washington 99354, and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352;
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40
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Di Bernardo P, Zanonato PL, Tian G, Tolazzi M, Rao L. Thermodynamics of the complexation of uranium(vi) with oxalate in aqueous solution at 10–70 °C. Dalton Trans 2009:4450-7. [DOI: 10.1039/b901561b] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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41
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Wang XB, Xing XP, Wang LS. Observation of H2 Aggregation onto a Doubly Charged Anion in a Temperature-Controlled Ion Trap. J Phys Chem A 2008; 112:13271-4. [DOI: 10.1021/jp808769m] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Xue-Bin Wang
- Department of Physics, Washington State University, 2710 University Drive, Richland, Washington 99354, and Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, MS K8-88, P.O. Box 999, Richland, Washington 99352
| | - Xiao-Peng Xing
- Department of Physics, Washington State University, 2710 University Drive, Richland, Washington 99354, and Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, MS K8-88, P.O. Box 999, Richland, Washington 99352
| | - Lai-Sheng Wang
- Department of Physics, Washington State University, 2710 University Drive, Richland, Washington 99354, and Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, MS K8-88, P.O. Box 999, Richland, Washington 99352
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42
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Wang F, Zhang YH, Zhao LJ, Zhang H, Cheng H, Shou JJ. Micro-Raman study on the conformation behavior of succinate in supersaturated sodium succinate aerosols. Phys Chem Chem Phys 2008; 10:4154-8. [DOI: 10.1039/b719457a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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43
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Jagoda-Cwiklik B, Wang XB, Woo HK, Yang J, Wang GJ, Zhou M, Jungwirth P, Wang LS. Microsolvation of the Dicyanamide Anion: [N(CN)2-](H2O)n (n = 0−12). J Phys Chem A 2007; 111:7719-25. [PMID: 17658734 DOI: 10.1021/jp071832n] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Photoelectron spectroscopy is combined with ab initio calculations to study the microsolvation of the dicyanamide anion, N(CN)(2)(-). Photoelectron spectra of [N(CN)(2)(-)](H2O)n (n = 0-12) have been measured at room temperature and also at low temperature for n = 0-4. Vibrationally resolved photoelectron spectra are obtained for N(CN)(2)(-), allowing the electron affinity of the N(CN)2 radical to be determined accurately as 4.135 +/- 0.010 eV. The electron binding energies and the spectral width of the hydrated clusters are observed to increase with the number of water molecules. The first five waters are observed to provide significant stabilization to the solute, whereas the stabilization becomes weaker for n > 5. The spectral width, which carries information about the solvent reorganization upon electron detachment in [N(CN)(2)(-)](H2O)n, levels off for n > 6. Theoretical calculations reveal several close-lying isomers for n = 1 and 2 due to the fact that the N(CN)(2)(-) anion possesses three almost equivalent hydration sites. In all the hydrated clusters, the most stable structures consist of a water cluster solvating one end of the N(CN)(2)(-) anion.
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Affiliation(s)
- Barbara Jagoda-Cwiklik
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, and Center for Biomolecules and Complex Molecular Systems, Flemingovo nAm. 2, 16610 Prague 6, Czech Republic
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Keasler SJ, Nellas RB, Chen B. Water mediated attraction between repulsive ions: A cluster-based simulation approach. J Chem Phys 2006; 125:144520. [PMID: 17042622 DOI: 10.1063/1.2338316] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Could two like ions be attractive to each other in the presence of water? To address this question and to further interrogate the intriguing solvent effects at a molecular level on multiply charged species, a "bottom-up" simulation approach was formulated, from which the inter-ionic potential of mean force and other properties were monitored closely with the gradual addition of the water molecules. This approach was first tested on a commonly studied ion pair (namely, Na+ and Cl-), where excellent agreement with the published bulk-phase data was found. Further application of this approach to the like-ion pair indicated that an attractive interaction between two anions or two cations can be induced by the addition of an appropriate number of water molecules. This result corroborates a recent experimental report of an intriguing folding of a dianionic polymer into a more compact structure with the addition of water molecules in gas phase as well as previous theoretical findings of possible attraction between like-ion pairs in bulk aqueous phases.
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Affiliation(s)
- Samuel J Keasler
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803-1804, USA
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Minofar B, Vacha R, Wahab A, Mahiuddin S, Kunz W, Jungwirth P. Propensity for the Air/Water Interface and Ion Pairing in Magnesium Acetate vs Magnesium Nitrate Solutions: Molecular Dynamics Simulations and Surface Tension Measurements. J Phys Chem B 2006; 110:15939-44. [PMID: 16898748 DOI: 10.1021/jp060627p] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Molecular dynamics simulations in slab geometry and surface tension measurements were performed for aqueous solutions of magnesium acetate and magnesium nitrate at various concentrations. The simulations reveal a strong affinity of acetate anions for the surface, while nitrate exhibits only a very weak surface propensity, and magnesium is per se strongly repelled from the air/water interface. CH3COO- also exhibits a much stronger tendency than NO3- for ion pairing with Mg2+ in the bulk and particularly in the interfacial layer. The different interfacial behavior of the two anions is reflected by the opposite concentration dependence (beyond 0.5 M) of surface tension of the corresponding magnesium salts. Measurements, supported by simulations, show that the surface tension of Mg(NO3)2(aq) increases with concentration as for other inorganic salts. However, in the case of Mg(OAc)2(aq) the surface tension isotherm exhibits a turnover around 0.5 M, after which it starts to decrease, indicating a positive net solute excess in the interfacial layer at higher concentrations.
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Affiliation(s)
- Babak Minofar
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Prague 6, Czech Republic
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Wada Y, Sato M, Tsukahara Y. Fine Control of Red–Green–Blue Photoluminescence in Zeolites Incorporated with Rare-Earth Ions and a Photosensitizer. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200502670] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Wada Y, Sato M, Tsukahara Y. Fine Control of Red–Green–Blue Photoluminescence in Zeolites Incorporated with Rare-Earth Ions and a Photosensitizer. Angew Chem Int Ed Engl 2006; 45:1925-8. [PMID: 16485306 DOI: 10.1002/anie.200502670] [Citation(s) in RCA: 122] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Yuji Wada
- Department of Material and Life Science, Graduate School of Engineering, Osaka University, Japan
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Affiliation(s)
- Bernd Winter
- Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, Max-Born-Strasse 2A, D-12489 Berlin, Germany.
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Affiliation(s)
- Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, and Center for Biomolecules and Complex Molecular Systems, Flemingovo nam. 2, 16610 Prague 6, Czech Republic.
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Asciutto E, Sagui C. Exploring Intramolecular Reactions in Complex Systems with Metadynamics: The Case of the Malonate Anions. J Phys Chem A 2005; 109:7682-7. [PMID: 16834142 DOI: 10.1021/jp053428z] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
We have determined the optimized structures, relative energies and intramolecular reactions for two anionic forms of malonic acid, anion malonate(-1) (HO(2)CCH(2)CO(2)(-)) and malonate(-2) ((-)O(2)CCH(2)CO(2)(-)). For this purpose we employed accurate quantum chemistry calculations using second-order Möller-Plesset perturbation theory and Density Functional Theory with an aug'-cc-p-VTZ basis set to determine the structures and energies, and a novel metadynamics method based on Car-Parrinello molecular dynamics for the thermal reactions. For both malonates, we found new isomers (keto and enol structures) characterized by CO(2) rotations and intramolecular proton transfers. These proton transfers characterize the keto-enol tautomerism that takes place both in the monoanion and dianion. In all cases, the keto tautomer is the more stable configuration. The metadynamics method allows the system to explore the potential energy surface in a few picoseconds, crossing activation barriers of 20-50 kcal/mol.
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Affiliation(s)
- Eliana Asciutto
- Center for High Performance Simulations and Department of Physics, North Carolina State University, Raleigh, North Carolina 27695-8202, USA
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