1
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Wannenmacher A, Lu W, Amarasinghe C, Cerasoli F, Donadio D, Ahmed M. An experimental and computational view of the photoionization of diol-water clusters. J Chem Phys 2024; 160:144303. [PMID: 38591680 DOI: 10.1063/5.0198162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 03/15/2024] [Indexed: 04/10/2024] Open
Abstract
In the interstellar medium, diols and other prebiotic molecules adsorb onto icy mantles surrounding dust grains. Water in the ice may affect the reactivity and photoionization of these diols. Ethylene glycol (EG), 1,2-propylene glycol, and 1,3-propylene glycol clusters with water clusters were used as a proxy to study these interactions. The diol-water clusters were generated in a continuous supersonic molecular beam, photoionized by synchrotron-based vacuum ultraviolet light from the Advanced Light Source, and subsequently detected by reflectron time-of-flight mass spectrometry. The appearance energies for the detected clusters were determined from the mass spectra, collected at increasing photon energy. Clusters of both diol fragments and unfragmented diols with water were detected. The lowest energy geometry optimized conformers for the observed EG-water clusters and EG fragment-water clusters have been visualized using density functional theory (DFT), providing insight into hydrogen bonding networks and how these affect fragmentation and appearance energy. As the number of water molecules clustered around EG fragments (m/z 31 and 32) increased, the appearance energy for the cluster decreased, indicating a stabilization by water. This trend was supported by DFT calculations. Fragment clusters from 1,2-propylene glycol exhibited a similar trend, but with a smaller energy decrease, and no trend was observed from 1,3-propylene glycol. We discuss and suggest that the reactivity and photoionization of diols in the presence of water depend on the size of the diol, the location of the hydroxyl group, and the number of waters clustered around the diol.
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Affiliation(s)
- Anna Wannenmacher
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Chemistry, University of California, Davis, California 95616, USA
| | - Wenchao Lu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Chandika Amarasinghe
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Frank Cerasoli
- Department of Chemistry, University of California, Davis, California 95616, USA
| | - Davide Donadio
- Department of Chemistry, University of California, Davis, California 95616, USA
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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2
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Rashid MH, Borca CN, Xto JM, Huthwelker T. X-Ray absorption spectroscopy on airborne aerosols. ENVIRONMENTAL SCIENCE: ATMOSPHERES 2022; 2:1338-1350. [PMID: 36561554 PMCID: PMC9648630 DOI: 10.1039/d2ea00016d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 09/26/2022] [Indexed: 11/07/2022]
Abstract
Here we demonstrate a method for performing X-ray absorption spectroscopy (XAS) on airborne aerosols. XAS provides unique insight into elemental composition, chemical and phase state, local coordination and electronic structure of both crystalline and amorphous matter. The aerosol is generated from different salt solutions using a commercial atomizer and dried using a diffusion drier. Embedded in a carrier gas, the aerosol is guided into the experimental chamber for XAS analysis. Typical particle sizes range from some 10 to a few 100 nm. Inside the chamber the aerosol bearing gas is then confined into a region of about 1-2 cm3 in size, by a pure flow of helium, generating a stable free-flowing stream of aerosol. It is hit by a monochromatic X-ray beam, and the emitted fluorescent light is used for spectroscopic analysis. Using an aerosol generated from CaCl2, KCl, and (NH4)2SO4 salt solutions, we demonstrate the functionality of the system in studying environmentally relevant systems. In addition, we show that the detection limits are sufficient to also observe subtle spectroscopic signatures in XAS spectra with integration times of about 1-2 hours using a bright undulator beamline. This novel setup opens new research opportunities for studying the nucleation of new phases in multicomponent aerosol systems in situ, and for investigating (photo-) chemical reactions on airborne matter, as relevant to both atmospheric science and also for general chemical application.
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Affiliation(s)
- Muhammad H. Rashid
- Paul Scherrer Institute, Swiss Light Source, Laboratory for FemtochemistryForschungsstrasse 111Villigen PSISwitzerland
| | - Camelia N. Borca
- Paul Scherrer Institute, Swiss Light Source, Laboratory for FemtochemistryForschungsstrasse 111Villigen PSISwitzerland
| | - Jacinta M. Xto
- Paul Scherrer Institute, Swiss Light Source, Laboratory for FemtochemistryForschungsstrasse 111Villigen PSISwitzerland
| | - Thomas Huthwelker
- Paul Scherrer Institute, Swiss Light Source, Laboratory for FemtochemistryForschungsstrasse 111Villigen PSISwitzerland
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3
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Gorantla SMNVT, Pan S, Mondal KC, Frenking G. Stabilization of Linear C 3 by Two Donor Ligands: A Theoretical Study of L-C 3 -L (L=PPh 3 , NHC Me , cAAC Me )*. Chemistry 2020; 26:14211-14220. [PMID: 32743817 PMCID: PMC7702110 DOI: 10.1002/chem.202003064] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Indexed: 12/18/2022]
Abstract
Quantum chemical studies using density functional theory and ab initio methods have been carried out for the molecules L-C3 -L with L=PPh3 (1), NHCMe (2, NHC=N-heterocyclic carbene), and cAACMe (3, cAAC=cyclic (alkyl)(amino) carbene). The calculations predict that 1 and 2 have equilibrium geometries where the ligands are bonded with rather acute bonding angles at the linear C3 moiety. The phosphine adduct 1 has a synclinal (gauche) conformation whereas 2 exhibits a trans conformation of the ligands. In contrast, the compound 3 possesses a nearly linear arrangement of the carbene ligands at the C3 fragment. The bond dissociation energies of the ligands have the order 1<2<3. The bonding analysis using charge and energy decomposition methods suggests that 3 is best described as a cumulene with electron-sharing double bonds between neutral fragments (cAACMe )2 and C3 in the respective electronic quintet state yielding (cAACMe )=C3 =(cAACMe ). In contrast, 1 and 2 possess electron-sharing and dative bonds between positively charged ligands [(PPh3 )2 ]+ or [(NHCMe )2 ]+ and negatively charged [C3 ]- fragments in the respective doublet state.
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Affiliation(s)
| | - Sudip Pan
- Fachbereich ChemiePhilipps-Universität MarburgHans-Meerwein-Straße35032MarburgGermany
- Institute of Advanced SynthesisSchool of Chemistry and Molecular EngineeringJiangsu National Synergetic Innovation Center for, Advanced MaterialsNanjing Tech UniversityNanjing211816P. R. China
| | | | - Gernot Frenking
- Fachbereich ChemiePhilipps-Universität MarburgHans-Meerwein-Straße35032MarburgGermany
- Institute of Advanced SynthesisSchool of Chemistry and Molecular EngineeringJiangsu National Synergetic Innovation Center for, Advanced MaterialsNanjing Tech UniversityNanjing211816P. R. China
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4
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Li G, Rudshteyn B, Shee J, Weber JL, Coskun D, Bochevarov AD, Friesner RA. Accurate Quantum Chemical Calculation of Ionization Potentials: Validation of the DFT-LOC Approach via a Large Data Set Obtained from Experiments and Benchmark Quantum Chemical Calculations. J Chem Theory Comput 2020; 16:2109-2123. [PMID: 32150400 DOI: 10.1021/acs.jctc.9b00875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Density functional theory (DFT) is known to often fail when calculating thermodynamic values, such as ionization potentials (IPs), due to nondynamical error (i.e., the self-interaction term). Localized orbital corrections (LOCs), derived from assigning corresponding corrections for the atomic orbitals, bonds, and paired and unpaired electrons, are utilized to correct the IPs calculated from DFT. Some of the assigned parameters, which are physically due to the contraction of and change of the environment around a bond, depend on identifying the location in the molecule from which the electron is removed using differences in the charge density between neutral and oxidized species. In our training set, various small organic and inorganic molecules from the literature with the reported experimental IP were collected using the NIST database. For certain molecules with uncertain or no experimental measurements, we obtain the IP using coupled cluster theory and auxiliary field quantum Monte Carlo. After applying these corrections, as generated by least-squares regression, LOC reduces the mean absolute deviation (MAD) of the training set from 0.143 to 0.046 eV (R2 = 0.895), and LOC reduces the MAD of the test set from 0.192 to 0.097 eV (R2 = 0.833).
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Affiliation(s)
- Guangqi Li
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Benjamin Rudshteyn
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - James Shee
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - John L Weber
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Dilek Coskun
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | | | - Richard A Friesner
- Department of Chemistry, Columbia University, New York, New York 10027, United States
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5
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Ahmed M, Kostko O. From atoms to aerosols: probing clusters and nanoparticles with synchrotron based mass spectrometry and X-ray spectroscopy. Phys Chem Chem Phys 2020; 22:2713-2737. [DOI: 10.1039/c9cp05802h] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Synchrotron radiation provides insight into spectroscopy and dynamics in clusters and nanoparticles.
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Affiliation(s)
- Musahid Ahmed
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
| | - Oleg Kostko
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
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6
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Ghara M, Pan S, Chattaraj PK. Donor-Acceptor vs Electron-Shared Bonding: Triatomic Si nC 3-n ( n ≤ 3) Clusters Stabilized by Cyclic Alkyl(amino) Carbene. J Phys Chem A 2019; 123:10764-10771. [PMID: 31774284 DOI: 10.1021/acs.jpca.9b09807] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
SinC3-n (n ≤ 3) clusters are interstellar species that are transient in nature at ambient conditions. Herein, the structure, stability, and nature of bonding in cyclic alkyl(amino) carbene (cAAC) protected SinC3-n (n ≤ 3) clusters are studied in silico. The Si3(cAAC)3 complex was previously reported to be synthesized in large scale. The present results indicate that because the C-CcAAC bond is stronger than the Si-CcAAC bond, C3(cAAC)3 and SiC2(cAAC)3 complexes have significantly larger stability with respect to ligand dissociation than the Si3(cAAC)3 complex, while Si2C(cAAC)3 has almost the same stability as in the latter complex. Moreover, considering the Si3(cAAC)3 complex as a precursor, the hypothetical successive single Si substitution process by a single C atom in Si3(cAAC)3 complex is exergonic in nature. The bonding situation is analyzed by employing natural bond orbital (NBO), electron density, and energy decomposition analyses in combination with the natural orbital for chemical valence theory. These studies show that the nature of bonding in C-CcAAC and Si-CcAAC bonds differs significantly from each other. The former bonds are best described as an electron-shared double bond, whereas the latter bonds are of donor-acceptor type consisting of two components, Si←CcAAC σ-donation and Si→CcAAC π-back-donation. Nevertheless, in the former bonds, covalent character is larger than the ionic one but in the latter bonds the reverse is true. For some Si-CcAAC bonds, the π-natural orbital cannot be located by the NBO method, presumably because of slightly lower occupancy than the cutoff values, but the electron density analysis confirms that different Si-CcAAC bonds in a given complex are almost equivalent in terms of electron density distribution. This paper reports an interesting change in bonding pattern when one replaces Si by a C atom in triatomic silicon carbide clusters stabilized by a ligand.
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Affiliation(s)
- Manas Ghara
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur 721302 , India
| | - Sudip Pan
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials , Nanjing Tech University , Nanjing 211816 , China
| | - Pratim K Chattaraj
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur 721302 , India.,Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
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7
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Metz RB, Altinay G, Kostko O, Ahmed M. Probing Reactivity of Gold Atoms with Acetylene and Ethylene with VUV Photoionization Mass Spectrometry and Ab Initio Studies. J Phys Chem A 2019; 123:2194-2202. [DOI: 10.1021/acs.jpca.8b12560] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ricardo B. Metz
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Gokhan Altinay
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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8
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Komorek R, Xu B, Yao J, Ablikim U, Troy TP, Kostko O, Ahmed M, Yu XY. Enabling liquid vapor analysis using synchrotron VUV single photon ionization mass spectrometry with a microfluidic interface. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:115105. [PMID: 30501361 DOI: 10.1063/1.5048315] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 10/19/2018] [Indexed: 06/09/2023]
Abstract
Vacuum ultraviolet (VUV) single photon ionization mass spectrometry (SPI-MS) is a vacuum-based technique typically used for the analysis of gas phase and solid samples, but not for liquids due to the challenge in introducing volatile liquids in a vacuum. Here we present the first demonstration of in situ liquid analysis by integrating the System for Analysis at the Liquid Vacuum Interface (SALVI) microfluidic reactor into VUV SPI-MS. Four representative volatile organic compound (VOC) solutions were used to illustrate the feasibility of liquid analysis. Our results show the accurate mass identification of the VOC molecules and the reliable determination of appearance energy that is consistent with ionization energy for gaseous species in the literature as reported. This work validates that the vacuum-compatible SALVI microfluidic interface can be utilized at the synchrotron beamline and enable the in situ study of gas-phase molecules evaporating off the surface of a liquid, which holds importance in the study of condensed matter chemistry.
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Affiliation(s)
- R Komorek
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
| | - B Xu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - J Yao
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
| | - U Ablikim
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - T P Troy
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - O Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - M Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - X Y Yu
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
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9
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Garcia GA, Gans B, Krüger J, Holzmeier F, Röder A, Lopes A, Fittschen C, Alcaraz C, Loison JC. Valence shell threshold photoelectron spectroscopy of C3Hx (x = 0–3). Phys Chem Chem Phys 2018. [DOI: 10.1039/c8cp00510a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present the photoelectron spectra of C3Hx (x = 0–3) formed in a microwave discharge flow-tube reactor by consecutive H abstractions from C3H4 (C3Hx + F → C3Hx−1 + HF (x = 1–4)), but also from F + CH4 schemes by secondary reactions.
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Affiliation(s)
| | | | - Julia Krüger
- Synchrotron SOLEIL
- L'Orme des Merisiers
- Gif sur Yvette
- France
| | - Fabian Holzmeier
- Synchrotron SOLEIL
- L'Orme des Merisiers
- Gif sur Yvette
- France
- Laboratoire de Chimie Physique d'Orsay
| | - Anja Röder
- Synchrotron SOLEIL
- L'Orme des Merisiers
- Gif sur Yvette
- France
| | - Allan Lopes
- CNRS – Université Paris-Sud et Paris-Saclay
- Laboratoire de Chimie Physique
- UMR 8000
- Centre Universitaire Paris-Sud
- 91405 Orsay
| | | | - Christian Alcaraz
- CNRS – Université Paris-Sud et Paris-Saclay
- Laboratoire de Chimie Physique
- UMR 8000
- Centre Universitaire Paris-Sud
- 91405 Orsay
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10
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Pan S, Saha R, Osorio E, Chattaraj PK, Frenking G, Merino G. Ligand-Supported E3Clusters (E=Si-Sn). Chemistry 2017; 23:7463-7473. [DOI: 10.1002/chem.201700494] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Sudip Pan
- Departamento de Física Aplicada; Centro de Investigación y de Estudios Avanzados Unidad Mérida; km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Ranajit Saha
- Department of Chemistry and Centre for Theoretical Studies; Indian Institute of Technology Kharagpur; Kharagpur 721302 India
| | - Edison Osorio
- Departamento de Ciencias Básicas; Universidad Católica Luis Amigó, SISCO, Transversal; 51A #67B 90 Medellín Colombia
| | - Pratim K. Chattaraj
- Department of Chemistry and Centre for Theoretical Studies; Indian Institute of Technology Kharagpur; Kharagpur 721302 India
| | - Gernot Frenking
- Fachbereich Chemie; Philipps-Universität Marburg; Hans-Meerwein-Straße 35032 Marburg Germany
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering; Jiangsu National Synergetic Innovation Center for Advanced Materials; Nanjing Tech University; Nanjing 211816 China
| | - Gabriel Merino
- Departamento de Física Aplicada; Centro de Investigación y de Estudios Avanzados Unidad Mérida; km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
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11
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Mondal KC, Roy S, Dittrich B, Andrada DM, Frenking G, Roesky HW. A Triatomic Silicon(0) Cluster Stabilized by a Cyclic Alkyl(amino) Carbene. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201511019] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kartik Chandra Mondal
- Institut für Anorganische Chemie; Universität Göttingen; Tammannstrasse 4 37077 Göttingen Germany
| | - Sudipta Roy
- Institut für Anorganische Chemie; Universität Göttingen; Tammannstrasse 4 37077 Göttingen Germany
| | - Birger Dittrich
- Anorganische Chemie und Strukturchemie II; Heinrich-Heine Universität Düsseldorf; Gebäude 26.42.O1.21, Universitätsstraße 1 40225 Düsseldorf Germany
| | - Diego M. Andrada
- Fachbereich Chemie; Philipps-Universität Marburg; Hans-Meerwein-Straße 35032 Marburg Germany
| | - Gernot Frenking
- Fachbereich Chemie; Philipps-Universität Marburg; Hans-Meerwein-Straße 35032 Marburg Germany
| | - Herbert W. Roesky
- Institut für Anorganische Chemie; Universität Göttingen; Tammannstrasse 4 37077 Göttingen Germany
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12
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Mondal KC, Roy S, Dittrich B, Andrada DM, Frenking G, Roesky HW. A Triatomic Silicon(0) Cluster Stabilized by a Cyclic Alkyl(amino) Carbene. Angew Chem Int Ed Engl 2016; 55:3158-61. [DOI: 10.1002/anie.201511019] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2015] [Indexed: 11/12/2022]
Affiliation(s)
- Kartik Chandra Mondal
- Institut für Anorganische Chemie; Universität Göttingen; Tammannstrasse 4 37077 Göttingen Germany
| | - Sudipta Roy
- Institut für Anorganische Chemie; Universität Göttingen; Tammannstrasse 4 37077 Göttingen Germany
| | - Birger Dittrich
- Anorganische Chemie und Strukturchemie II; Heinrich-Heine Universität Düsseldorf; Gebäude 26.42.O1.21, Universitätsstraße 1 40225 Düsseldorf Germany
| | - Diego M. Andrada
- Fachbereich Chemie; Philipps-Universität Marburg; Hans-Meerwein-Straße 35032 Marburg Germany
| | - Gernot Frenking
- Fachbereich Chemie; Philipps-Universität Marburg; Hans-Meerwein-Straße 35032 Marburg Germany
| | - Herbert W. Roesky
- Institut für Anorganische Chemie; Universität Göttingen; Tammannstrasse 4 37077 Göttingen Germany
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13
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Parker DSN, Kaiser RI, Kostko O, Ahmed M. Selective Formation of Indene through the Reaction of Benzyl Radicals with Acetylene. Chemphyschem 2015; 16:2091-3. [DOI: 10.1002/cphc.201500313] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Indexed: 11/11/2022]
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14
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Parker DSN, Kaiser RI, Bandyopadhyay B, Kostko O, Troy TP, Ahmed M. Unexpected chemistry from the reaction of naphthyl and acetylene at combustion-like temperatures. Angew Chem Int Ed Engl 2015; 54:5421-4. [PMID: 25752687 DOI: 10.1002/anie.201411987] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Revised: 02/06/2015] [Indexed: 11/07/2022]
Abstract
The hydrogen abstraction/acetylene addition (HACA) mechanism has long been viewed as a key route to aromatic ring growth of polycyclic aromatic hydrocarbons (PAHs) in combustion systems. However, doubt has been drawn on the ubiquity of the mechanism by recent electronic structure calculations which predict that the HACA mechanism starting from the naphthyl radical preferentially forms acenaphthylene, thereby blocking cyclization to a third six-membered ring. Here, by probing the products formed in the reaction of 1- and 2-naphthyl radicals in excess acetylene under combustion-like conditions with the help of photoionization mass spectrometry, we provide experimental evidence that this reaction produces 1- and 2-ethynylnaphthalenes (C12 H8 ), acenaphthylene (C12 H8 ) and diethynylnaphthalenes (C14 H8 ). Importantly, neither phenanthrene nor anthracene (C14 H10 ) was found, which indicates that the HACA mechanism does not lead to cyclization of the third aromatic ring as expected but rather undergoes ethynyl substitution reactions instead.
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Affiliation(s)
- Dorian S N Parker
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, (USA) http://www.chem.hawaii.edu/Bil301/welcome.html
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15
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Parker DSN, Kaiser RI, Bandyopadhyay B, Kostko O, Troy TP, Ahmed M. Unexpected Chemistry from the Reaction of Naphthyl and Acetylene at Combustion-Like Temperatures. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201411987] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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16
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Lynch PT, Troy TP, Ahmed M, Tranter RS. Probing Combustion Chemistry in a Miniature Shock Tube with Synchrotron VUV Photo Ionization Mass Spectrometry. Anal Chem 2015; 87:2345-52. [DOI: 10.1021/ac5041633] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Patrick T. Lynch
- Chemical
Science and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - Tyler P. Troy
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Robert S. Tranter
- Chemical
Science and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
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17
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Parker DSN, Kaiser RI, Troy TP, Kostko O, Ahmed M, Mebel AM. Toward the Oxidation of the Phenyl Radical and Prevention of PAH Formation in Combustion Systems. J Phys Chem A 2014; 119:7145-54. [DOI: 10.1021/jp509170x] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Dorian S. N. Parker
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Ralf I. Kaiser
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Tyler P. Troy
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Alexander M. Mebel
- Department of Chemistry and
Biochemistry, Florida International University, Miami, Florida 33199, United States
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18
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Huang WJ, Sun YL, Chin CH, Lee SH. Dynamics of the reaction of C₃(a³Πu) radicals with C₂H₂: a new source for the formation of C₅H. J Chem Phys 2014; 141:124314. [PMID: 25273444 DOI: 10.1063/1.4896618] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The reaction C3(a(3)Πu) + C2H2 → C5H + H was investigated at collision energy 10.9 kcal mol(-1) that is less than the enthalpy of ground-state reaction C3(X(1)Σg (+)) + C2H2 → C5H + H. C3(a(3)Πu) radicals were synthesized from 1% C4F6/He by pulsed high-voltage discharge. The title reaction was conducted in a crossed molecular-beam apparatus equipped with a quadrupole-mass filter. Product C5H was interrogated with time-of-flight spectroscopy and synchrotron vacuum-ultraviolet ionization. Reactant C3(a(3)Πu) and product C5H were identified using photoionization spectroscopy. The ionization thresholds of C3(X(1)Σg(+)) and C3(a(3)Πu) are determined as 11.6 ± 0.2 eV and 10.0 ± 0.2 eV, respectively. The C5H product is identified as linear pentynylidyne that has an ionization energy 8.4 ± 0.2 eV. The title reaction releases translational energy 10.6 kcal mol(-1) in average and has an isotropic product angular distribution. The quantum-chemical calculation indicates that the C3(a(3)Πu) radical attacks one of the carbon atoms of C2H2 and subsequently a hydrogen atom is ejected to form C5H + H, in good agreement with the experimental observation. As far as we are aware, the C3(a(3)Πu) + C2H2 reaction is investigated for the first time. This work gives an implication for the formation of C5H from the C3(a(3)Πu) + C2H2 reaction occurring in a combustion or discharge process of C2H2.
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Affiliation(s)
- Wen-Jian Huang
- National Synchrotron Radiation Research Center (NSRRC), 101 Hsin-Ann Road, Hsinchu Science Park, Hsinchu 30076, Taiwan
| | - Yi-Lun Sun
- National Synchrotron Radiation Research Center (NSRRC), 101 Hsin-Ann Road, Hsinchu Science Park, Hsinchu 30076, Taiwan
| | - Chih-Hao Chin
- National Synchrotron Radiation Research Center (NSRRC), 101 Hsin-Ann Road, Hsinchu Science Park, Hsinchu 30076, Taiwan
| | - Shih-Huang Lee
- National Synchrotron Radiation Research Center (NSRRC), 101 Hsin-Ann Road, Hsinchu Science Park, Hsinchu 30076, Taiwan
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Randazzo JB, Croteau P, Kostko O, Ahmed M, Boering KA. Isotope effects and spectroscopic assignments in the non-dissociative photoionization spectrum of N2. J Chem Phys 2014; 140:194303. [DOI: 10.1063/1.4873717] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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20
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Bell F, Ruan QN, Golan A, Horn PR, Ahmed M, Leone SR, Head-Gordon M. Dissociative Photoionization of Glycerol and its Dimer Occurs Predominantly via a Ternary Hydrogen-Bridged Ion–Molecule Complex. J Am Chem Soc 2013; 135:14229-39. [DOI: 10.1021/ja405511v] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Franziska Bell
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Qiao N. Ruan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Amir Golan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Paul R. Horn
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Stephen R. Leone
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Martin Head-Gordon
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
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21
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Tranter RS, Lynch PT. A miniature high repetition rate shock tube. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2013; 84:094102. [PMID: 24089840 DOI: 10.1063/1.4820917] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
A miniature high repetition rate shock tube with excellent reproducibility has been constructed to facilitate high temperature, high pressure, gas phase experiments at facilities such as synchrotron light sources where space is limited and many experiments need to be averaged to obtain adequate signal levels. The shock tube is designed to generate reaction conditions of T > 600 K, P < 100 bars at a cycle rate of up to 4 Hz. The design of the apparatus is discussed in detail, and data are presented to demonstrate that well-formed shock waves with predictable characteristics are created, repeatably. Two synchrotron-based experiments using this apparatus are also briefly described here, demonstrating the potential of the shock tube for research at synchrotron light sources.
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Affiliation(s)
- R S Tranter
- Chemical Sciences and Engineering Department, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, Illinois 60439, USA
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22
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Perera M, Metz RB, Kostko O, Ahmed M. Vacuum Ultraviolet Photoionization Studies of PtCH2and H-Pt-CH3: A Potential Energy Surface for the Pt+CH4Reaction. Angew Chem Int Ed Engl 2012; 52:888-91. [DOI: 10.1002/anie.201207931] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Indexed: 11/11/2022]
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23
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Perera M, Metz RB, Kostko O, Ahmed M. Vacuum Ultraviolet Photoionization Studies of PtCH2and H-Pt-CH3: A Potential Energy Surface for the Pt+CH4Reaction. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201207931] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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24
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Golan A, Ahmed M, Mebel AM, Kaiser RI. A VUV photoionization study of the multichannel reaction of phenyl radicals with 1,3-butadiene under combustion relevant conditions. Phys Chem Chem Phys 2012; 15:341-7. [PMID: 23165625 DOI: 10.1039/c2cp42848b] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We studied the reaction of phenyl radicals (C(6)H(5)) with 1,3-butadiene (H(2)CCHCHCH(2)) exploiting a high temperature chemical reactor under combustion-like conditions (300 Torr, 873 K). The reaction products were probed in a supersonic beam by utilizing VUV radiation from the Advanced Light Source and by recording the experimental PIE curves at mass-to-charge ratios of m/z = 130 (C(10)H(10)(+)), 116 (C(9)H(8)(+)), and 104 (C(8)H(8)(+)). Our data suggest that the atomic hydrogen (H), methyl (CH(3)), and vinyl (C(2)H(3)) losses are open with estimated branching ratios of about 86 ± 4%, 8 ± 2%, and 6 ± 2%, respectively. The isomer distributions were probed further by fitting the experimentally recorded PIE curves with a linear combination of the PIE curves of individual C(10)H(10), C(9)H(8), and C(8)H(8) isomers. These fits indicate the formation of three C(10)H(10) isomers (trans-1,3-butadienylbenzene, 1,4-dihydronaphthalene, 1-methylindene), three C(9)H(8) isomers (indene, phenylallene, 1-phenyl-1-methylacetylene), and a C(8)H(8) isomer (styrene). A comparison with results from recent crossed molecular beam studies of the 1,3-butadiene-phenyl radical reaction and electronic structure calculations suggests that trans-1,3-butadienylbenzene (130 amu), 1,4-dihydronaphthalene (130 amu), and styrene (104 amu) are reaction products formed as a consequence of a bimolecular reaction between the phenyl radical and 1,3-butadiene. 1-Methylindene (130 amu), indene (116 amu), phenylallene (116 amu), and 1-phenyl-1-methylacetylene (116 amu) are synthesized upon reaction of the phenyl radical with three C(4)H(6) isomers: 1,2-butadiene (H(2)CCCH(CH(3))), 1-butyne (HCCC(2)H(5)), and 2-butyne (CH(3)CCCH(3)); these C(4)H(6) isomers can be formed from 1,3-butadiene via hydrogen atom assisted isomerization reactions or via thermal rearrangements of 1,3-butadiene involving hydrogen shifts in the high temperature chemical reactor.
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Affiliation(s)
- Amir Golan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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25
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Golan A, Ahmed M. Molecular beam mass spectrometry with tunable vacuum ultraviolet (VUV) synchrotron radiation. J Vis Exp 2012:50164. [PMID: 23149375 DOI: 10.3791/50164] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
Tunable soft ionization coupled to mass spectroscopy is a powerful method to investigate isolated molecules, complexes and clusters and their spectroscopy and dynamics(1-4). Fundamental studies of photoionization processes of biomolecules provide information about the electronic structure of these systems. Furthermore determinations of ionization energies and other properties of biomolecules in the gas phase are not trivial, and these experiments provide a platform to generate these data. We have developed a thermal vaporization technique coupled with supersonic molecular beams that provides a gentle way to transport these species into the gas phase. Judicious combination of source gas and temperature allows for formation of dimers and higher clusters of the DNA bases. The focus of this particular work is on the effects of non-covalent interactions, i.e., hydrogen bonding, stacking, and electrostatic interactions, on the ionization energies and proton transfer of individual biomolecules, their complexes and upon micro-hydration by water(1, 5-9). We have performed experimental and theoretical characterization of the photoionization dynamics of gas-phase uracil and 1,3-dimethyluracil dimers using molecular beams coupled with synchrotron radiation at the Chemical Dynamics Beamline(10) located at the Advanced Light Source and the experimental details are visualized here. This allowed us to observe the proton transfer in 1,3-dimethyluracil dimers, a system with pi stacking geometry and with no hydrogen bonds(1). Molecular beams provide a very convenient and efficient way to isolate the sample of interest from environmental perturbations which in return allows accurate comparison with electronic structure calculations(11, 12). By tuning the photon energy from the synchrotron, a photoionization efficiency (PIE) curve can be plotted which informs us about the cationic electronic states. These values can then be compared to theoretical models and calculations and in turn, explain in detail the electronic structure and dynamics of the investigated species (1, 3).
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Affiliation(s)
- Amir Golan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory
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26
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Vasiliou A, Piech KM, Zhang X, Nimlos MR, Ahmed M, Golan A, Kostko O, Osborn DL, Daily JW, Stanton JF, Barney Ellison G. The products of the thermal decomposition of CH3CHO. J Chem Phys 2011; 135:014306. [DOI: 10.1063/1.3604005] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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27
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Takahashi LK, Zhou J, Kostko O, Golan A, Leone SR, Ahmed M. Vacuum-Ultraviolet Photoionization and Mass Spectrometric Characterization of Lignin Monomers Coniferyl and Sinapyl Alcohols. J Phys Chem A 2011; 115:3279-90. [DOI: 10.1021/jp111437e] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Lynelle K. Takahashi
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California at Berkeley, Berkeley, California 94720, United States
| | - Jia Zhou
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Amir Golan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Stephen R. Leone
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California at Berkeley, Berkeley, California 94720, United States
- Department of Physics, University of California at Berkeley, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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28
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Leone SR, Ahmed M, Wilson KR. Chemical dynamics, molecular energetics, and kinetics at the synchrotron. Phys Chem Chem Phys 2010; 12:6564-78. [PMID: 20419177 DOI: 10.1039/c001707h] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Scientists at the Chemical Dynamics Beamline of the Advanced Light Source in Berkeley are continuously reinventing synchrotron investigations of physical chemistry and chemical physics with vacuum ultraviolet light. One of the unique aspects of a synchrotron for chemical physics research is the widely tunable vacuum ultraviolet light that permits threshold ionization of large molecules with minimal fragmentation. This provides novel opportunities to assess molecular energetics and reaction mechanisms, even beyond simple gas phase molecules. In this perspective, significant new directions utilizing the capabilities at the Chemical Dynamics Beamline are presented, along with an outlook for future synchrotron and free electron laser science in chemical dynamics. Among the established and emerging fields of investigations are cluster and biological molecule spectroscopy and structure, combustion flame chemistry mechanisms, radical kinetics and product isomer dynamics, aerosol heterogeneous chemistry, planetary and interstellar chemistry, and secondary neutral ion-beam desorption imaging of biological matter and materials chemistry.
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Affiliation(s)
- Stephen R Leone
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
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29
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Weber T, Meyer W, Rosmus† P. Vibrational motion of the radical cation C in its degenerate electronic ground state. Mol Phys 2010. [DOI: 10.1080/00268971003702213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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30
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Kaiser RI, Maksyutenko P, Ennis C, Zhang F, Gu X, Krishtal SP, Mebel AM, Kostko O, Ahmed M. Untangling the chemical evolution of Titan's atmosphere and surface–from homogeneous to heterogeneous chemistry. Faraday Discuss 2010; 147:429-78; discussion 527-52. [DOI: 10.1039/c003599h] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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Kostko O, Leone SR, Duncan MA, Ahmed M. Determination of Ionization Energies of Small Silicon Clusters with Vacuum Ultraviolet Radiation. J Phys Chem A 2009; 114:3176-81. [DOI: 10.1021/jp9091688] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720, and Department of Chemistry, University of Georgia, Athens, Georgia 30602
| | - Stephen R. Leone
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720, and Department of Chemistry, University of Georgia, Athens, Georgia 30602
| | - Michael A. Duncan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720, and Department of Chemistry, University of Georgia, Athens, Georgia 30602
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720, and Department of Chemistry, University of Georgia, Athens, Georgia 30602
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32
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Kostko O, Kim SK, Leone SR, Ahmed M. Mass-Analyzed Threshold Ionization (MATI) Spectroscopy of Atoms and Molecules Using VUV Synchrotron Radiation. J Phys Chem A 2009; 113:14206-11. [DOI: 10.1021/jp9008338] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, and Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720
| | - Sang Kyu Kim
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, and Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720
| | - Stephen R. Leone
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, and Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, and Department of Chemistry and Physics, University of California at Berkeley, Berkeley, California 94720
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33
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Zhou J, Kostko O, Nicolas C, Tang X, Belau L, de Vries MS, Ahmed M. Experimental Observation of Guanine Tautomers with VUV Photoionization. J Phys Chem A 2009; 113:4829-32. [DOI: 10.1021/jp811107x] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jia Zhou
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106
| | - Christophe Nicolas
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106
| | - Xiaonan Tang
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106
| | - Leonid Belau
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106
| | - Mattanjah S. de Vries
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106
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34
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Kostko O, Ahmed M, Metz RB. Vacuum-Ultraviolet Photoionization Measurement and ab Initio Calculation of the Ionization Energy of Gas-Phase SiO2. J Phys Chem A 2009; 113:1225-30. [PMID: 19170561 DOI: 10.1021/jp8091495] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Ricardo B. Metz
- Department of Chemistry, University of Massachusetts, Amherst, Massachusetts 01003
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35
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Kertesz M, Yang S. Energetics of linear carbon chains in one-dimensional restricted environment. Phys Chem Chem Phys 2009; 11:425-30. [PMID: 19089000 DOI: 10.1039/b812635f] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The energetics of even and odd linear C(n) carbon chain clusters are investigated by hybrid density functional theory (DFT) calculations. These molecular species are especially interesting due to their recent observation inside carbon nanotubes by polarized resonant Raman spectroscopy and high-resolution transmission electron microscopy (HRTEM) by different research groups. Neutral, anionic and dianionic carbon chains were studied with sizes up to n=75, although most presented calculations are limited to n<or= 24. Aggregation into longer chains is favored for neutral and anionic chains of any size. The barrier to aggregation of 2C(n)<-->C(2n) is of the order of 40-20 kcal mol(-1), which gradually decreases with increasing chain size, n. These barriers can be overcome during the high temperature synthesis or annealing conditions, but not when cooled down for the HRTEM and Raman experiments. Therefore, in addition to the already observed long chains also shorter chains should be observable under appropriate conditions inside carbon nanotubes.
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Affiliation(s)
- Miklos Kertesz
- Department of Chemistry, Georgetown University, Washington DC 20057-1227, USA.
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36
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Citir M, Metz RB, Belau L, Ahmed M. Direct Determination of the Ionization Energies of PtC, PtO, and PtO2 with VUV Radiation. J Phys Chem A 2008; 112:9584-90. [DOI: 10.1021/jp8024733] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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37
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Tuna T, Chabot M, Pino T, Désesquelles P, LePadellec A, Martinet G, Barat M, Lucas B, Mezdari F, Montagnon L, Van-Oanh NT, Lavergne L, Lachaize A, Carpentier Y, Béroff K. Fragmentation branching ratios of highly excited hydrocarbon molecules CnH and their cations CnH+ (n⩽4). J Chem Phys 2008; 128:124312. [DOI: 10.1063/1.2884862] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
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38
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Yang S, Kertesz M. Linear Cn Clusters: Are They Acetylenic or Cumulenic? J Phys Chem A 2007; 112:146-51. [DOI: 10.1021/jp076805b] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Shujiang Yang
- Department of Chemistry, Georgetown University, Washington DC 20057-1227
| | - Miklos Kertesz
- Department of Chemistry, Georgetown University, Washington DC 20057-1227
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39
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Belau L, Wilson KR, Leone SR, Ahmed M. Vacuum Ultraviolet (VUV) Photoionization of Small Water Clusters. J Phys Chem A 2007; 111:10075-83. [PMID: 17715907 DOI: 10.1021/jp075263v] [Citation(s) in RCA: 136] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Tunable vacuum ultraviolet (VUV) photoionization studies of water clusters are performed using 10-14 eV synchrotron radiation and analyzed by reflectron time-of-flight (TOF) mass spectrometry. Photoionization efficiency (PIE) curves for protonated water clusters (H2O)(n)H+ are measured with 50 meV energy resolution. The appearance energies of a series of protonated water clusters are determined from the photoionization threshold for clusters composed of up to 79 molecules. These appearance energies represent an upper limit of the adiabatic ionization energy of the corresponding parent neutral water cluster in the supersonic molecular beam. The experimental results show a sharp drop in the appearance energy for the small neutral water clusters (from 12.62 +/- 0.05 to 10.94 +/- 0.06 eV, for H2O and (H2O)4, respectively), followed by a gradual decrease for clusters up to (H2O)23 converging to a value of 10.6 eV (+/-0.2 eV). The dissociation energy to remove a water molecule from the corresponding neutral water cluster is derived through thermodynamic cycles utilizing the dissociation energies of protonated water clusters reported previously in the literature. The experimental results show a gradual decrease of the dissociation energy for removal of one water molecule for small neutral water clusters (3 <or= n <or= 9). This dissociation energy is discussed within the context of hydrogen bond breaking in a neutral water cluster.
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Affiliation(s)
- Leonid Belau
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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40
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Belau L, Wheeler SE, Ticknor BW, Ahmed M, Leone SR, Allen WD, Schaefer HF, Duncan MA. Ionization Thresholds of Small Carbon Clusters: Tunable VUV Experiments and Theory. J Am Chem Soc 2007; 129:10229-43. [PMID: 17655303 DOI: 10.1021/ja072526q] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Small carbon clusters (Cn, n = 2-15) are produced in a molecular beam by pulsed laser vaporization and studied with vacuum ultraviolet (VUV) photoionization mass spectrometry. The required VUV radiation in the 8-12 eV range is provided by the Advanced Light Source (ALS) at the Lawrence Berkeley National Laboratory. Mass spectra at various ionization energies reveal the qualitative relative abundances of the neutral carbon clusters produced. By far the most abundant species is C3. Using the tunability of the ALS, ionization threshold spectra are recorded for the clusters up to 15 atoms in size. The ionization thresholds are compared to those measured previously with charge-transfer bracketing methods. To interpret the ionization thresholds for different cluster sizes, new ab initio calculations are carried out on the clusters for n = 4-10. Geometric structures are optimized at the CCSD(T) level with cc-pVTZ (or cc-pVDZ) basis sets, and focal point extrapolations are applied to both neutral and cation species to determine adiabatic and vertical ionization potentials. The comparison of computed and measured ionization potentials makes it possible to investigate the isomeric structures of the neutral clusters produced in this experiment. The measurements are inconclusive for the n = 4-6 species because of unquenched excited electronic states. However, the data provide evidence for the prominence of linear structures for the n = 7, 9, 11, 13 species and the presence of cyclic C10.
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Affiliation(s)
- Leonid Belau
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
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41
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Hochlaf M, Nicolas C, Poisson L. Photoionization of C4 molecular beam: Ab initio calculations. J Chem Phys 2007; 127:014310. [PMID: 17627349 DOI: 10.1063/1.2746032] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Large computations are performed on the C(4) (+) cation in order to characterize its stable isomers and its lowest electronic excited states using configuration interaction methods and large basis sets. Several stable isomers are found including a linear C(4) (+)(l-C(4) (+)), a rhombic C(4) (+)(r-C(4) (+)) (or cyclic), and a branched (d-C(4) (+)) structure. Our calculations show a high density of electronic states for all of these isomers favoring their interactions. By combining the present ab initio data and those on neutral C(4), the l-C(4)(X)+hnu-->l-C(4) (+)(X(+))+e(-), d-C(4)(X)+hnu-->d-C(4) (+)(X(+))+e(-), and r-C(4)(X)+hnu-->r-C(4) (+)(X(+))+e(-) vertical photoionization transition energies are computed at 10.87, 10.92, and 10.77 eV, respectively. Photoionizing a C(4) molecular beam results on an onset at 10.4-10.5 eV and then to a linear increase of the signal due to the opening of several ionization channels involving most of the C(4) and C(4) (+) isomers and electronic states.
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Affiliation(s)
- Majdi Hochlaf
- Laboratoire de Chimie Théorique, Université de Marne la Vallée, F 77454 Champs sur Marne, France
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Kaiser RI, Belau L, Leone SR, Ahmed M, Wang Y, Braams BJ, Bowman JM. A Combined Experimental and Computational Study on the Ionization Energies of the Cyclic and Linear C3H Isomers. Chemphyschem 2007; 8:1236-9. [PMID: 17429825 DOI: 10.1002/cphc.200700109] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
For the first time, two hydrogen-deficient hydrocarbon radicals are generated in situ via laser ablation of graphite and seeding the ablated species in acetylene gas, which acts as a carrier and reactant simultaneously. By recording photoionization efficiency curves (PIE) and simulating the experimental spectrum with computed Franck-Condon (FC) factors, we can reproduce the general pattern of the PIE curve of m/z=37. We recover ionization energies of 9.15 eV and 9.76 eV for the linear and cyclic isomers, respectively. Our combined experimental and theoretical studies provide an unprecedented, versatile pathway to investigate the ionization energies of even more complex hydrocarbon radicals in situ, which are difficult to prepare by classical synthesis, in future experiments.
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Affiliation(s)
- Ralf I Kaiser
- University of Hawaii at Manoa, Department of Chemistry, Honolulu, HI 96822, USA.
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Belau L, Wilson KR, Leone SR, Ahmed M. Vacuum-Ultraviolet Photoionization Studies of the Microhydration of DNA Bases (Guanine, Cytosine, Adenine, and Thymine). J Phys Chem A 2007; 111:7562-8. [PMID: 17419600 DOI: 10.1021/jp0705929] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In this work, we report on a photoionization study of the microhydration of the four DNA bases. Gas-phase clusters of water with DNA bases [guanine (G), cytosine (C), adenine (A), and thymine (T)] are generated via thermal vaporization of the bases and expansion of the resultant vapor in a continuous supersonic jet expansion of water seeded in Ar. The resulting clusters are investigated by single-photon ionization with tunable vacuum-ultraviolet synchrotron radiation and mass analyzed using reflectron mass spectrometry. Photoionization efficiency (PIE) curves are recorded for the DNA bases and the following water (W) clusters: G, GWn (n = 1-3); C, CWn (n = 1-3); A, AWn (n = 1,2); and T, TWn (n = 1-3). Appearance energies (AE) are derived from the onset of these PIE curves (all energies in eV): G (8.1 +/- 0.1), GW (8.0 +/- 0.1), GW2 (8.0 +/- 0.1), and GW3 (8.0); C (8.65 +/- 0.05), CW (8.45 +/- 0.05), CW2 (8.4 +/- 0.1), and CW3 (8.3 +/- 0.1); A (8.30 +/- 0.05), AW (8.20 +/- 0.05), and AW2 (8.1 +/- 0.1); T (8.90 +/- 0.05); and TW (8.75 +/- 0.05), TW2 (8.6 +/- 0.1), and TW3 (8.6 +/- 0.1). The AEs of the DNA bases decrease slightly with the addition of water molecules (up to three) but do not converge to values found for photoinduced electron removal from DNA bases in solution.
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Affiliation(s)
- Leonid Belau
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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Guo Y, Gu X, Zhang F, Mebel AM, Kaiser RI. A crossed molecular beam study on the formation of hexenediynyl radicals (H2CCCCCCH; C6H3(X2A′)) via reactions of tricarbon molecules, C3(X1Σg+), with allene (H2CCCH2; X1A1) and methylacetylene (CH3CCH; X1A1). Phys Chem Chem Phys 2007; 9:1972-9. [PMID: 17431525 DOI: 10.1039/b618179a] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Crossed molecular beams experiments have been utilized to investigate the reaction dynamics between two closed shell species, i.e. the reactions of tricarbon molecules, C(3)(X(1)Sigma(g)(+)), with allene (H(2)CCCH(2); X(1)A(1)), and with methylacetylene (CH(3)CCH; X(1)A(1)). Our investigations indicated that both these reactions featured characteristic threshold energies of 40-50 kJ mol(-1). The reaction dynamics are indirect and suggested the reactions proceeded via an initial addition of the tricarbon molecule to the unsaturated hydrocarbon molecules forming initially cyclic reaction intermediates of the generic formula C(6)H(4). The cyclic intermediates isomerize to yield eventually the acyclic isomers CH(3)CCCCCH (methylacetylene reaction) and H(2)CCCCCCH(2) (allene reaction). Both structures decompose via atomic hydrogen elimination to form the 1-hexene-3,4-diynyl-2 radical (C(6)H(3); H(2)CCCCCCH). Future flame studies utilizing the Advanced Light Source should therefore investigate the existence of 1-hexene-3,4-diynyl-2 radicals in high temperature methylacetylene and allene flames. Since the corresponding C(3)H(3), C(4)H(3), and C(5)H(3) radicals have been identified via their ionization potentials in combustion flames, the existence of the C(6)H(3) isomer 1-hexene-3,4-diynyl-2 can be predicted as well.
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Affiliation(s)
- Ying Guo
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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Smith IWM, Sage AM, Donahue NM, Herbst E, Quan D. The temperature-dependence of rapid low temperature reactions: experiment, understanding and prediction. Faraday Discuss 2006; 133:137-56; discussion 191-230, 449-52. [PMID: 17191447 DOI: 10.1039/b600721j] [Citation(s) in RCA: 85] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Despite the success of the CRESU (Cinétique de Réaction en Ecoulement Supersonique Uniforme) method in measuring rate coefficients for neutral-neutral reactions of radicals down close to the very low temperatures prevalent in dense interstellar clouds (ISCs), there are still many reactions of potential importance in the chemistry of these objects for which there have been no measurements of low temperature rate coefficients. One important class of reactions is that between atomic and molecular free radicals and unsaturated hydrocarbons; that is, alkynes and alkenes. Based on semi-empirical arguments and correlations of 'room temperature' rate coefficients, k(298 K), for reactions of this type with the difference between the ionisation energy of the alkyne/alkene and the electron affinity of the radical, we suggest which reactions between the radicals, C(3P), O(3P), N(4S), CH, C2H and CN, and carbon chain molecules (Cn) and cyanopolyynes (HC2nCN and NCC2nCN) are likely to be fast at the temperature of dense ISCs. These reactions and rate coefficients have been incorporated into a purely gas-phase model (osu2005) of ISC chemistry. The results of these calculations are presented and discussed.
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Affiliation(s)
- Ian W M Smith
- University Chemical Laboratories, Lensfield Road, Cambridge, UK.
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