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Phenylene-linked tetrapyrrole arrays containing free base and diverse metal chelate forms – Versatile synthetic architectures for catalysis and artificial photosynthesis. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2021.214278] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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2
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Bols PS, Anderson HL. Shadow Mask Templates for Site-Selective Metal Exchange in Magnesium Porphyrin Nanorings. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201804787] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Pernille S. Bols
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; Oxford OX1 3TA UK
| | - Harry L. Anderson
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; Oxford OX1 3TA UK
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3
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Bols PS, Anderson HL. Shadow Mask Templates for Site-Selective Metal Exchange in Magnesium Porphyrin Nanorings. Angew Chem Int Ed Engl 2018; 57:7874-7877. [DOI: 10.1002/anie.201804787] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Indexed: 01/02/2023]
Affiliation(s)
- Pernille S. Bols
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; Oxford OX1 3TA UK
| | - Harry L. Anderson
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; Oxford OX1 3TA UK
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4
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Kumpulainen T, Lang B, Rosspeintner A, Vauthey E. Ultrafast Elementary Photochemical Processes of Organic Molecules in Liquid Solution. Chem Rev 2016; 117:10826-10939. [DOI: 10.1021/acs.chemrev.6b00491] [Citation(s) in RCA: 249] [Impact Index Per Article: 31.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Tatu Kumpulainen
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
| | - Bernhard Lang
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
| | - Arnulf Rosspeintner
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
| | - Eric Vauthey
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
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5
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Shrestha K, Virgil KA, Jakubikova E. Electronic Absorption Spectra of Tetrapyrrole-Based Pigments via TD-DFT: A Reduced Orbital Space Study. J Phys Chem A 2016; 120:5816-25. [PMID: 27392135 DOI: 10.1021/acs.jpca.6b04797] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Tetrapyrrole-based pigments play a crucial role in photosynthesis as principal light absorbers in light-harvesting chemical systems. As such, accurate theoretical descriptions of the electronic absorption spectra of these pigments will aid in the proper description and understanding of the overall photophysics of photosynthesis. In this work, time-dependent density functional theory (TD-DFT) at the CAM-B3LYP/6-31G* level of theory is employed to produce the theoretical absorption spectra of several tetrapyrrole-based pigments. However, the application of TD-DFT to large systems with several hundreds of atoms can become computationally prohibitive. Therefore, in this study, TD-DFT calculations with reduced orbital spaces (ROSs) that exclude portions of occupied and virtual orbitals are pursued as a viable, computationally cost-effective alternative to conventional TD-DFT calculations. The effects of reducing orbital space size on theoretical spectra are qualitatively and quantitatively described, and both conventional and ROS results are benchmarked against experimental absorption spectra of various tetrapyrrole-based pigments. The orbital reduction approach is also applied to a large natural pigment assembly that comprises the principal light-absorbing component of the reaction center in purple bacteria. Overall, we find that TD-DFT calculations with proper and judicious orbital space reductions can adequately reproduce conventional, full orbital space, TD-DFT results of all pigments studied in this work.
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Affiliation(s)
- Kushal Shrestha
- Department of Chemistry, North Carolina State University , Raleigh, North Carolina 27695, United States
| | - Kyle A Virgil
- Department of Chemistry, North Carolina State University , Raleigh, North Carolina 27695, United States
| | - Elena Jakubikova
- Department of Chemistry, North Carolina State University , Raleigh, North Carolina 27695, United States
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6
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Hondros CJ, Aravindu K, Diers JR, Holten D, Lindsey JS, Bocian DF. Effects of Linker Torsional Constraints on the Rate of Ground-State Hole Transfer in Porphyrin Dyads. Inorg Chem 2012; 51:11076-86. [DOI: 10.1021/ic301613k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Christopher J. Hondros
- Department of Chemistry, University of California Riverside, Riverside, California
92521-0403, United States
| | - Kunche Aravindu
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina
27695-8204, United States
| | - James R. Diers
- Department of Chemistry, University of California Riverside, Riverside, California
92521-0403, United States
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889,
United States
| | - Jonathan S. Lindsey
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina
27695-8204, United States
| | - David F. Bocian
- Department of Chemistry, University of California Riverside, Riverside, California
92521-0403, United States
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7
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Tsuchiya T, Jakubikova E. Role of Noncoplanar Conformation in Facilitating Ground State Hole Transfer in Oxidized Porphyrin Dyads. J Phys Chem A 2012; 116:10107-14. [DOI: 10.1021/jp307285z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takashi Tsuchiya
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United
States
| | - Elena Jakubikova
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United
States
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Wan J, Wang H, Wu Z, Shun YC, Zheng X, Phillips DL. Resonance Raman spectroscopy and density functional theory calculation study of photodecay dynamics of tetra(4-carboxyphenyl) porphyrin. Phys Chem Chem Phys 2011; 13:10183-90. [DOI: 10.1039/c0cp02933e] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Nieves-Bernier EJ, Diers JR, Taniguchi M, Holten D, Bocian DF, Lindsey JS. Probing the rate of hole transfer in oxidized synthetic chlorin dyads via site-specific (13)C-labeling. J Org Chem 2010; 75:3193-202. [PMID: 20429592 DOI: 10.1021/jo100527h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Understanding electronic communication among interacting constituents of multicomponent molecular architectures is important for rational design in diverse fields including artificial photosynthesis and molecular electronics. One strategy for examining ground-state hole/electron transfer in an oxidized tetrapyrrolic array relies on analysis of the hyperfine interactions observed in the EPR spectrum of the pi-cation radical. This strategy has been previously employed to probe the hole/electron-transfer process in oxidized multiporphyrin arrays of normal isotopic composition, wherein (1)H and (14)N serve as the hyperfine "clocks", and in arrays containing site-specific (13)C-labels, which serve as additional hyperfine clocks. Herein, the hyperfine-clock strategy is applied to dyads of dihydroporphyrins (chlorins). Chlorins are more closely related structurally to chlorophylls than are porphyrins. A de novo synthetic strategy has been employed to introduce a (13)C label at the 19-position of the chlorin macrocycle, which is a site of large electron/hole density and is accessible synthetically beginning with (13)C-nitromethane. The resulting singly (13)C-labeled chlorin was coupled with an unlabeled chlorin to give a dyad wherein a diphenylethyne linker spans the 10-positions of the two zinc chlorins. EPR studies of the monocations of both the natural abundance and (13)C-labeled zinc chlorin dyads and benchmark zinc chlorin monomers reveal that the time scale for hole/electron transfer is in the 4-7 ns range, which is 5-10-fold longer than that in analogous porphyrin arrays. The slower hole/electron transfer rate observed for the chlorin versus porphyrin dyads is attributed to the fact that the HOMO is a(1u)-like for the chlorins versus a(2u)-like for the porphyrins; the a(1u)-like orbital exhibits little (or no) electron/hole density at the site of linker attachment whereas the a(2u)-like orbital exhibits significant electron/hole density at this site. Collectively, the studies of the chlorin and porphyrin dyads provide insights into the structural features that influence the hole/electron-transfer process.
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Affiliation(s)
- Elías J Nieves-Bernier
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
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Diers JR, Taniguchi M, Holten D, Lindsey JS, Bocian DF. Probing the Rate of Hole Transfer in Oxidized Porphyrin Dyads Using Thallium Hyperfine Clocks. J Am Chem Soc 2010; 132:12121-32. [DOI: 10.1021/ja105082d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- James R. Diers
- Departments of Chemistry, University of California, Riverside, California 92521-0403, North Carolina State University, Raleigh, North Carolina 27695-8204, and Washington University, St. Louis, Missouri 63130-4889
| | - Masahiko Taniguchi
- Departments of Chemistry, University of California, Riverside, California 92521-0403, North Carolina State University, Raleigh, North Carolina 27695-8204, and Washington University, St. Louis, Missouri 63130-4889
| | - Dewey Holten
- Departments of Chemistry, University of California, Riverside, California 92521-0403, North Carolina State University, Raleigh, North Carolina 27695-8204, and Washington University, St. Louis, Missouri 63130-4889
| | - Jonathan S. Lindsey
- Departments of Chemistry, University of California, Riverside, California 92521-0403, North Carolina State University, Raleigh, North Carolina 27695-8204, and Washington University, St. Louis, Missouri 63130-4889
| | - David F. Bocian
- Departments of Chemistry, University of California, Riverside, California 92521-0403, North Carolina State University, Raleigh, North Carolina 27695-8204, and Washington University, St. Louis, Missouri 63130-4889
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Synthesis of oligo(p-phenylene)-linked dyads containing free base, zinc(II) or thallium(III) porphyrins for studies in artificial photosynthesis. Tetrahedron 2010. [DOI: 10.1016/j.tet.2010.05.059] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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Wang H, Xu J, Wan J, Zhao Y, Zheng X. Excited state structural dynamics of tetra(4-aminophenyl)porphine in the condensed phase: resonance Raman spectroscopy and density functional theory calculation study. J Phys Chem B 2010; 114:3623-32. [PMID: 20175507 DOI: 10.1021/jp1000978] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Resonance Raman spectra (RRs) of tetra(4-aminophenyl) porphine (TAPP) were obtained, and density functional calculations were done to help the elucidation of the photorelaxation dynamics of Soret (B(x) and B(y) band) and Q(y) electronic transitions. The RRs indicate that the photorelaxation dynamics for the S(0) --> S(3) excited electronic state is predominantly along the totally symmetric porphin ring C(beta)=C(beta) + C(m)C(alpha) stretch, C(m)-ph stretch, and simultaneously along the asymmetric nu(C(m)C(alpha))(as) and nu(C(alpha)C(beta))(as) relaxation processes leading to Q(y) while that for S(0) --> S(2) is predominantly along the porphin ring C(beta)=C(beta) + C(m)C(alpha) stretch and simultaneously along the asymmetric nu(C(m)C(alpha))(as) + nu(C(alpha)C(beta))(as) relaxation processes leading to thermal equilibrium in Q(x). The excited state structural dynamics of TAPP determined from RRs shows that internal conversion B(x) --> Q(y) electronic relaxation occurs in tens of femtoseconds and the short-time dynamics were first interpreted with account of the time-dependent wave packet theory and Herzberg-Teller contributions.
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Affiliation(s)
- Huigang Wang
- Department of Chemistry and State Key Laboratory of ATMMT(MOE), Zhejiang Sci-Tech University, Hangzhou, People's Republic of China 310018.
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Fukushima T, Wada T, Ohtsu H, Tanaka K. Photoinduced four- and six-electron reduction of mononuclear ruthenium complexes having NAD+ analogous ligands. Dalton Trans 2010; 39:11526-34. [DOI: 10.1039/c0dt00504e] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Song HE, Taniguchi M, Diers JR, Kirmaier C, Bocian DF, Lindsey JS, Holten D. Linker Dependence of Energy and Hole Transfer in Neutral and Oxidized Multiporphyrin Arrays. J Phys Chem B 2009; 113:16483-93. [DOI: 10.1021/jp9072558] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hee-eun Song
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Masahiko Taniguchi
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - James R. Diers
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - David F. Bocian
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Jonathan S. Lindsey
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
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16
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Akhigbe J, Ryppa C, Zeller M, Brückner C. Oxazolochlorins. 2. Intramolecular Cannizzaro Reaction of meso-Tetraphenylsecochlorin Bisaldehyde. J Org Chem 2009; 74:4927-33. [PMID: 19489565 DOI: 10.1021/jo9006046] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Joshua Akhigbe
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Department of Chemistry, Youngstown State University, One University Plaza, Youngstown, Ohio 44555-3663
| | - Claudia Ryppa
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Department of Chemistry, Youngstown State University, One University Plaza, Youngstown, Ohio 44555-3663
| | - Matthias Zeller
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Department of Chemistry, Youngstown State University, One University Plaza, Youngstown, Ohio 44555-3663
| | - Christian Brückner
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Department of Chemistry, Youngstown State University, One University Plaza, Youngstown, Ohio 44555-3663
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17
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Song HE, Taniguchi M, Speckbacher M, Yu L, Bocian DF, Lindsey JS, Holten D. Excited-State Energy Flow in Phenylene-Linked Multiporphyrin Arrays. J Phys Chem B 2009; 113:8011-9. [DOI: 10.1021/jp902183g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hee-eun Song
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Masahiko Taniguchi
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Markus Speckbacher
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Lianhe Yu
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - David F. Bocian
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Jonathan S. Lindsey
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, and Department of Chemistry, University of California Riverside, Riverside, California 92521-0403
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Song HE, Taniguchi M, Kirmaier C, Bocian DF, Lindsey JS, Holten D. Probing Ground-state Hole Transfer Between Equivalent, Electrochemically Inaccessible States in Multiporphyrin Arrays Using Time-resolved Optical Spectroscopy. Photochem Photobiol 2009; 85:693-704. [DOI: 10.1111/j.1751-1097.2008.00471.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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