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Vacher M, Fdez Galván I, Ding BW, Schramm S, Berraud-Pache R, Naumov P, Ferré N, Liu YJ, Navizet I, Roca-Sanjuán D, Baader WJ, Lindh R. Chemi- and Bioluminescence of Cyclic Peroxides. Chem Rev 2018; 118:6927-6974. [PMID: 29493234 DOI: 10.1021/acs.chemrev.7b00649] [Citation(s) in RCA: 218] [Impact Index Per Article: 36.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Bioluminescence is a phenomenon that has fascinated mankind for centuries. Today the phenomenon and its sibling, chemiluminescence, have impacted society with a number of useful applications in fields like analytical chemistry and medicine, just to mention two. In this review, a molecular-orbital perspective is adopted to explain the chemistry behind chemiexcitation in both chemi- and bioluminescence. First, the uncatalyzed thermal dissociation of 1,2-dioxetane is presented and analyzed to explain, for example, the preference for triplet excited product states and increased yield with larger nonreactive substituents. The catalyzed fragmentation reaction and related details are then exemplified with substituted 1,2-dioxetanone species. In particular, the preference for singlet excited product states in that case is explained. The review also examines the diversity of specific solutions both in Nature and in artificial systems and the difficulties in identifying the emitting species and unraveling the color modulation process. The related subject of excited-state chemistry without light absorption is finally discussed. The content of this review should be an inspiration to human design of new molecular systems expressing unique light-emitting properties. An appendix describing the state-of-the-art experimental and theoretical methods used to study the phenomena serves as a complement.
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Affiliation(s)
- Morgane Vacher
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden
| | - Ignacio Fdez Galván
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden
| | - Bo-Wen Ding
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry , Beijing Normal University , Beijing 100875 , China
| | - Stefan Schramm
- New York University Abu Dhabi , P.O. Box 129188, Abu Dhabi , United Arab Emirates
| | - Romain Berraud-Pache
- Université Paris-Est , Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
| | - Panče Naumov
- New York University Abu Dhabi , P.O. Box 129188, Abu Dhabi , United Arab Emirates
| | | | - Ya-Jun Liu
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry , Beijing Normal University , Beijing 100875 , China
| | - Isabelle Navizet
- Université Paris-Est , Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
| | - Daniel Roca-Sanjuán
- Institut de Ciència Molecular , Universitat de València , P.O. Box 22085 , Valencia , Spain
| | - Wilhelm J Baader
- Departamento de Química Fundamental, Instituto de Química , Universidade de São Paulo , Av. Prof. Lineu Prestes, 748 , 05508-000 São Paulo , SP , Brazil
| | - Roland Lindh
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.,Department of Chemistry and Chemical Biology , Harvard University , 12 Oxford Street , Cambridge , Massachusetts 02138 , United States
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Bastos EL, Farahani P, Bechara EJ, Baader WJ. Four-membered cyclic peroxides: Carriers of chemical energy. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3725] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Erick Leite Bastos
- Departamento de Química Fundamental, Instituto de Química; Universidade de São Paulo; São Paulo SP Brazil
| | - Pooria Farahani
- Departamento de Química Fundamental, Instituto de Química; Universidade de São Paulo; São Paulo SP Brazil
| | - Etelvino J.H. Bechara
- Departamento de Química Fundamental, Instituto de Química; Universidade de São Paulo; São Paulo SP Brazil
| | - Wilhelm Josef Baader
- Departamento de Química Fundamental, Instituto de Química; Universidade de São Paulo; São Paulo SP Brazil
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Farahani P, Lundberg M, Lindh R, Roca-Sanjuán D. Theoretical study of the dark photochemistry of 1,3-butadiene via the chemiexcitation of Dewar dioxetane. Phys Chem Chem Phys 2015; 17:18653-64. [DOI: 10.1039/c5cp02269j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
We report on the molecular basis of excited-state chemical processes that are induced by intramolecular chemiexcitation rather than by irradiation.
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Affiliation(s)
- Pooria Farahani
- Department of Chemistry-Ångström
- Uppsala University
- SE-751 20 Uppsala
- Sweden
- Instituto de Ciencia Molecular
| | - Marcus Lundberg
- Department of Chemistry-Ångström
- Uppsala University
- SE-751 20 Uppsala
- Sweden
| | - Roland Lindh
- Department of Chemistry-Ångström
- Uppsala University
- SE-751 20 Uppsala
- Sweden
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Gimisis T, Cismaş C. Isolation, Characterization, and Independent Synthesis of Guanine Oxidation Products. European J Org Chem 2006. [DOI: 10.1002/ejoc.200500581] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Thanasis Gimisis
- Department of Chemistry, University of Athens, Panepistimiopolis, 15771 Athens, Greece
| | - Crina Cismaş
- Department of Chemistry, University of Athens, Panepistimiopolis, 15771 Athens, Greece
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Carpenter BK. Electronically nonadiabatic thermal reactions of organic molecules. Chem Soc Rev 2006; 35:736-47. [PMID: 16862273 DOI: 10.1039/b509487a] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This critical review seeks to bring together organic reactions in which thermal generation of electronic excited states plays an important role. The best known such reactions are those producing chemiluminescent products. However, it appears that there may exist at least as many nonadiabatic reactions in which the excited molecules react before they luminesce. An effort is made to understand the efficiency of excited state production. The crucial roles played by reactive intermediates are highlighted.
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Affiliation(s)
- Barry K Carpenter
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, NY 14853-1301, USA.
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Adam W, Arnold MA, Grüne M, Nau WM, Pischel U, Saha-Möller CR. Spiroiminodihydantoin is a major product in the photooxidation of 2'-deoxyguanosine by the triplet states and oxyl radicals generated from hydroxyacetophenone photolysis and dioxetane thermolysis. Org Lett 2002; 4:537-40. [PMID: 11843585 DOI: 10.1021/ol017138m] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[reaction: see text] Photolysis of hydroxyacetophenone and thermolysis of the corresponding dioxetane afford spiroiminodihydantoin rather than 4,8-dihydro-4-hydroxy-8-oxo-2'-deoxyguanosine (4-HO-8-oxodG) through the oxidation of 2'-deoxyguanosine (dG) by triplet-excited hydroxyacetophenone and the peroxyl radicals derived thereof by alpha cleavage and subsequent oxygen trapping. The structure of the spiroiminodihydantoin is assigned by the SELINQUATE NMR technique, which unequivocally establishes the spirocyclic connectivity.
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Affiliation(s)
- Waldemar Adam
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany.
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Affiliation(s)
- Xiangyang Zhang
- Institut für Physikalische Chemie, Universität Basel, Klingelbergstrasse 80, CH‐4056 Basel, Switzerland
| | - Werner M. Nau
- Institut für Physikalische Chemie, Universität Basel, Klingelbergstrasse 80, CH‐4056 Basel, Switzerland
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