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Hao J, Nishiyama A, Mori S, Furukawa K, Shimizu S. Oxidation of 5,15-Dioxaporphyrin: Its Generality and Novelty as an Oxaporphyrin Analogue. Angew Chem Int Ed Engl 2023; 62:e202307862. [PMID: 37401745 DOI: 10.1002/anie.202307862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 06/28/2023] [Accepted: 07/04/2023] [Indexed: 07/05/2023]
Abstract
5,15-Dioxaporphyrin (DOP) is a novel meso-oxaporphyrin analogue and exhibits unique 20π-antiaromaticity, unlike its mother congener of 18π-aromatic 5-oxaporphyrin, commonly known as its cationic iron complex called verdohem, which is a key intermediate of heme catabolism. To reveal its reactivities and properties as an oxaporphyrin analogue, the oxidation of tetra-β-arylated DOP (DOP-Ar4 ) was explored in this study. Stepwise oxidation from the 20π-electron neutral state was achieved, and the corresponding 19π-electron radical cation and 18π-electron dication were characterized. Further oxidation of the 18π-aromatic dication resulted in the formation of a ring-opened dipyrrindione product by hydrolysis. Considering a similar reaction of verdoheme to ring-opened biliverdin in the heme degradation in nature, the current result consolidates the ring-opening reactivity of oxaporphyrinium cation species.
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Affiliation(s)
- Jiping Hao
- Department of Applied Chemistry, Graduate School of Engineering and Center for Molecular Systems (CMS), Kyushu University, Fukuoka, 819-0395, Japan
| | - Akihide Nishiyama
- Department of Applied Chemistry, Graduate School of Engineering and Center for Molecular Systems (CMS), Kyushu University, Fukuoka, 819-0395, Japan
| | - Shigeki Mori
- Advanced Research Support Center (ADRES), Ehime University, Matsuyama, 790-8577, Japan
| | - Ko Furukawa
- Center for Coordination of Research Facilities, Institute for Research Administrator, Niigata University, Niigata, 950-2181, Japan
| | - Soji Shimizu
- Department of Applied Chemistry, Graduate School of Engineering and Center for Molecular Systems (CMS), Kyushu University, Fukuoka, 819-0395, Japan
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2
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Takiguchi A, Kang S, Fukui N, Kim D, Shinokubo H. Dual Emission of a Free‐Base 5‐Oxaporphyrinium Cation from its
cis
‐ and
trans
‐NH Tautomers. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202013542] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Asahi Takiguchi
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-chi, Chikusa-ku Nagoya 464-8603 Japan
| | - Seongsoo Kang
- Department of Chemistry and Spectroscopy Laboratory for, Functional π-Electronic Systems Yonsei University Seoul 03722 South Korea
| | - Norihito Fukui
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-chi, Chikusa-ku Nagoya 464-8603 Japan
| | - Dongho Kim
- Department of Chemistry and Spectroscopy Laboratory for, Functional π-Electronic Systems Yonsei University Seoul 03722 South Korea
| | - Hiroshi Shinokubo
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-chi, Chikusa-ku Nagoya 464-8603 Japan
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3
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Takiguchi A, Kang S, Fukui N, Kim D, Shinokubo H. Dual Emission of a Free‐Base 5‐Oxaporphyrinium Cation from its
cis
‐ and
trans
‐NH Tautomers. Angew Chem Int Ed Engl 2020; 60:2915-2919. [DOI: 10.1002/anie.202013542] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Indexed: 11/10/2022]
Affiliation(s)
- Asahi Takiguchi
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-chi, Chikusa-ku Nagoya 464-8603 Japan
| | - Seongsoo Kang
- Department of Chemistry and Spectroscopy Laboratory for, Functional π-Electronic Systems Yonsei University Seoul 03722 South Korea
| | - Norihito Fukui
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-chi, Chikusa-ku Nagoya 464-8603 Japan
| | - Dongho Kim
- Department of Chemistry and Spectroscopy Laboratory for, Functional π-Electronic Systems Yonsei University Seoul 03722 South Korea
| | - Hiroshi Shinokubo
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-chi, Chikusa-ku Nagoya 464-8603 Japan
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4
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5
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Mori D, Yoneda T, Suzuki M, Hoshino T, Neya S. meso-Diketopyripentaphyrin and Diketopyrihexaphyrin as Macrocyclic Tripyrrinone Ligands for Ni II Ions. Chem Asian J 2019; 14:4169-4173. [PMID: 31777185 DOI: 10.1002/asia.201901375] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2019] [Revised: 10/24/2019] [Indexed: 12/27/2022]
Abstract
We report expanded porphyrins with pyridine rings and two neighboring carbonyl groups, which allow NiII ions to coordinate to the tripyrrinone-type NNNO coordination structure with Ni-O bonds. The selectivity of tripyrrinone is superior to other pyrrolic or pyridinic cavities of expanded porphyrins. Introduction of α-carbonyl pyridine next to the tripyrrolic conjugated structure is a powerful strategy for regioselective metalation of flexible expanded porphyrinoids.
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Affiliation(s)
- Daiki Mori
- Department of Pharmaceutical Sciences, Chiba University, Inohana, Chuo-ku, Chiba, 260-8675, Japan
| | - Tomoki Yoneda
- Department of Pharmaceutical Sciences, Chiba University, Inohana, Chuo-ku, Chiba, 260-8675, Japan.,Current address: Division of Applied Chemistry, Faculty of Engineering, Hokkaido University, Kita 13 Nishi 8 Kita-ku, Sapporo, Hokkaido, 060-8628, Japan
| | - Masaaki Suzuki
- Department of Material Sciences, Interdisciplinary Graduate School of Science and Engineering, Shimane University, Matsue, Shimane, 690-8504, Japan
| | - Tyuji Hoshino
- Department of Pharmaceutical Sciences, Chiba University, Inohana, Chuo-ku, Chiba, 260-8675, Japan
| | - Saburo Neya
- Department of Pharmaceutical Sciences, Chiba University, Inohana, Chuo-ku, Chiba, 260-8675, Japan
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6
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Gheidi M, Safari N, Zahedi M. Density functional theory studies on the conversion of hydroxyheme to iron-verdoheme in the presence of dioxygen. Dalton Trans 2018; 46:2146-2158. [PMID: 28120965 DOI: 10.1039/c6dt04250c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Detailed insight into the second step of heme degradation by heme oxygenase, oxophlorin to verdoheme and biliverdin, is presented. Density functional theory methods are reported for the conversion of oxophlorin to verdoheme. Since it is currently unclear whether dioxygen binding to iron oxophlorin is followed by a reduction or not, in this work we have focused on the difference in reactivity between [(Im)(O2˙)FeIII(PO˙)] (PO˙ is the oxophlorin dianion radical) and [(Im)(O2˙)FeIII(PO)]- (PO is the oxophlorin trianion). Thus, we have shown that in [(Im)(O2˙)FeIII(PO˙)] and [(Im)(O2˙)FeIII(PO)]-, the mechanisms are stepwise with an initial C-O bond activation to form a ring-structure where the oxophlorin is distorted from planarity. This is followed by homolytic dioxygen bond breaking that directly leads to iron-oxo verdoheme products. The [(Im)(O2˙)FeIII(PO˙)] mechanism proceeds via two-state-reactivity patterns on the adjacent doublet and quartet spin state surfaces, whereas the [(Im)(O2˙)FeIII(PO)]- route shows single-state-reactivity on a triplet spin state surface. In both, the rate determining step is the C-O bond activation, with substantially lower barriers on the [(Im)(O2˙)FeIII(PO˙)] surface of 12.15 kcal mol-1 in the gas phase compared to 22.55 kcal mol-1 for the intermediate-spin of [(Im)(O2˙)FeIII(PO)]-. The complete active space self-consistent-field wave functions with second-order multi-reference perturbation theory were also studied. Finally, the effects of the solvent and the medium on the reaction barriers were tested and shown to be considerable.
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Affiliation(s)
- Mahin Gheidi
- Department of Chemistry, Faculty of Sciences, Shahid Beheshti University, G. C., Evin, 19839-63113, Tehran, Iran.
| | - Nasser Safari
- Department of Chemistry, Faculty of Sciences, Shahid Beheshti University, G. C., Evin, 19839-63113, Tehran, Iran.
| | - Mansour Zahedi
- Department of Chemistry, Faculty of Sciences, Shahid Beheshti University, G. C., Evin, 19839-63113, Tehran, Iran.
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Li R, Zeller M, Brückner C. Oxidative ring-openings of octaethyl-2-oxochlorin: Regioisomeric β-oxobiliverdins. J PORPHYR PHTHALOCYA 2018. [DOI: 10.1142/s1088424618500608] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
We describe the oxidative ring opening of octaethyl-2-oxochlorin using two different oxidation methods, both providing a mixture of all possible regioisomeric products (8-[Formula: see text] through 8-[Formula: see text]. While isomers 8-[Formula: see text], 8-[Formula: see text], and 8-[Formula: see text] formed in isolable yields and relative ratios that varied with the oxidation method used, isomer 8-[Formula: see text] was invariably formed in trace amounts only. The three major products were spectroscopically characterized (IR, MS, 1D- and 2D NMR spectroscopy) and their configurations were deduced by NMR spectroscopy. The spectroscopic findings correlated well with the single crystal X-ray structure of the novel cleavage product 8-[Formula: see text] and the known compound of 8-[Formula: see text]. The work broadens the number of octaethylporphyrin-derived biliverdin derivatives available and presents a methodology of controlling the biliverdin backbone configuration by introduction of a [Formula: see text]-ketone functionality into select positions.
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Affiliation(s)
- Ruoshi Li
- Department of Chemistry, University of Connecticut, Storrs, CT 06369-3060, USA
| | - Matthias Zeller
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47907-2084, USA
| | - Christian Brückner
- Department of Chemistry, University of Connecticut, Storrs, CT 06369-3060, USA
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8
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Affiliation(s)
- Yoshihiro Matano
- Department
of Chemistry,
Faculty of Science, Niigata University, Nishi-ku, Niigata 950-2181, Japan
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9
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Abstract
The reactions of iron(III) hydroxyisoporphyrin, chloro[5-(hydroxy)-5,10,15,20-tetrakis(4-methyl)-5,21H-porphinato]iron(III) [Fe(4-Me-HTPI)(Cl)](-), 1 and chloro[5-(hydroxy)-5,10,15,20-tetrakis(4-methoxy-5,21H-porphinato]iron(III) [Fe(4-OMe-HTPI)(Cl)](-), 2 with different O(-), N(-) and S(-) nucleophiles have been performed to understand the reactivity of iron isoporphyrins with nucleophiles. The treatment of iron(III) hydroxy isoporphyrin with alcohols is found to form ring opened 19-benzoyl-1-alkoxy-bilin iron complexes. When alkyl amines were used the formation of ring opened 19-benzoyl-1-alkylamine-bilin iron complexes was observed, but heterocyclic N-nucleophiles such as pyridine and imidazole form benzoyl bilinone iron complexes. No role of oxygen was found in these nucleophilic ring opening reactions. The treatment of a S-nucleophile such as PhSH is found to reduce iron(III)-hydroxyisoporphyrin in the parent iron(III) porphyrin compound. The ring opening products were characterized using electronic and ESI-mass spectroscopy. The mechanism for the formation of ring opening products is based on the formation of a tetrahedral intermediate at the carbon atom near the saturated meso carbon atom similar to the hydrolytic pathway of verdoheme conversion to biliverdin.
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Affiliation(s)
- Jagannath Bhuyan
- Department of Chemistry, North Eastern Regional Institute of Science and Technology, Nirjuli, Arunachal Pradesh-791109, India.
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10
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Kakeya K, Aozasa M, Mizutani T, Hitomi Y, Kodera M. Nucleophilic ring opening of meso-substituted 5-oxaporphyrin by oxygen, nitrogen, sulfur, and carbon nucleophiles. J Org Chem 2014; 79:2591-600. [PMID: 24597593 DOI: 10.1021/jo5000412] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nucleophilic ring opening of 23H-[21,23-didehydro-10,15,20-tris(4-methoxycarbonylphenyl)-5-oxaporphyrinato](trifluoroacetato)zinc(II) with various nucleophiles such as alkoxide, amine, thiolate, and enolate gave 19-substituted bilinone zinc complexes, and they were isolated as free base bilinones. An X-ray crystallographic study demonstrated that the product of 5-oxaporphyrin with sodium methoxide was 21H,23H-(4Z,9Z,15Z)-1,21-dihydro-19-methoxy-5,10,15-tris(4-methoxycarbonylphenyl)bilin-1-one with a helicoidal conformation. The structure of the product of 5-oxaporphyrin with an enolate of ethyl acetoacetate was 21H,22H,24H-(4Z,9Z,15Z,19E)-19-(1-ethoxycarbonyl-2-oxopropylidene)-5,10,15-tris(4-methoxycarbonylphenyl)-1,19,21,24-tetrahydrobilin-1-one, with three inner NH groups. The product with SH(-) was also the same tautomer, 21H,22H,24H-19-thioxo-bilin-1-one, with three NH groups, while the products with RO(-), RNH2, and RS(-) nucleophiles were 21H,23H-bilin-1-ones with two inner NH groups. The first-order rate constants of the ring opening reaction of 5-oxaporphyrin with 1 M BnOH and BnSH in toluene at 303 K were 3.0 × 10(-4) and 6.1 × 10(-4) s(-1), respectively. The ratio of the rate of alcohol to thiol was much higher than that with methyl iodide, suggesting that 5-oxaporphyrin reacted as a hard electrophile in comparison to methyl iodide. UV-visible spectra of 19-substituted bilinones in CHCl3 at 298 K showed that the absorption maximum of the lower energy band was red-shifted in increasing order of O-substituted (645 nm), S-substituted (668 nm), N-substituted (699 nm), and C-substituted bilinones (706 nm).
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Affiliation(s)
- Kazuhisa Kakeya
- Department of Molecular Chemistry and Biochemistry, Faculty of Science and Engineering, and Center for Nanoscience Research, Doshisha University , Kyotanabe, Kyoto 610-0321, Japan
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11
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Garcia-Bosch I, Sharma SK, Karlin KD. A selective stepwise heme oxygenase model system: an iron(IV)-oxo porphyrin π-cation radical leads to a verdoheme-type compound via an isoporphyrin intermediate. J Am Chem Soc 2013; 135:16248-51. [PMID: 24147457 DOI: 10.1021/ja405739m] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The selective oxidation of the α-position of two heme-Fe(III) tetraarylporphryinate complexes occurs when water(hydroxide) attacks their oxidized Cmpd I-type equivalents, high-valent Fe(IV)═O π-cation radical species ((P(+•))Fe(IV)═O). Stepwise intermediate formation occurs, as detected by UV-vis spectroscopic monitoring or mass spectrometric interrogation, being iron(III) isoporphyrins, iron(III) benzoyl-biliverdins, and the final verdoheme-like products. Heme oxygenase (HO) enzymes could proceed through heterolytic cleavage of an iron(III)-hydroperoxo intermediate to form a transient Cmpd I-type species.
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Affiliation(s)
- Isaac Garcia-Bosch
- Department of Chemistry, The Johns Hopkins University , Baltimore, Maryland 21218, United States
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12
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Kakeya K, Nakagawa A, Mizutani T, Hitomi Y, Kodera M. Synthesis, Reactivity, and Spectroscopic Properties of meso-Triaryl-5-oxaporphyrins. J Org Chem 2012; 77:6510-9. [DOI: 10.1021/jo3010342] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kazuhisa Kakeya
- Department of Molecular Chemistry and Biochemistry,
Faculty of Science and Engineering, and Center for Nanoscience Research, Doshisha University, Kyotanabe, Kyoto 610-0321, Japan
| | - Aya Nakagawa
- Department of Molecular Chemistry and Biochemistry,
Faculty of Science and Engineering, and Center for Nanoscience Research, Doshisha University, Kyotanabe, Kyoto 610-0321, Japan
| | - Tadashi Mizutani
- Department of Molecular Chemistry and Biochemistry,
Faculty of Science and Engineering, and Center for Nanoscience Research, Doshisha University, Kyotanabe, Kyoto 610-0321, Japan
| | - Yutaka Hitomi
- Department of Molecular Chemistry and Biochemistry,
Faculty of Science and Engineering, and Center for Nanoscience Research, Doshisha University, Kyotanabe, Kyoto 610-0321, Japan
| | - Masahito Kodera
- Department of Molecular Chemistry and Biochemistry,
Faculty of Science and Engineering, and Center for Nanoscience Research, Doshisha University, Kyotanabe, Kyoto 610-0321, Japan
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13
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Abstract
The chlorido iron(III) complex of octaethyl-2,2′-bidipyrrin has been transformed to a series of pseudohalide complexes by ligand exchange reactions with azide, cyanate, thiocyanate and selenocyanate anions. All new complexes show the expected N-coordination of the axial ligand to the iron(III) center. In the solid state, all four species display an intermediate spin (S = 3/2) ground state, with a gradual increase of a high spin (S = 5/2) contribution at elevated temperatures for the members with the smallest ligand field strengths, i.e. the cyanato and the azido derivatives. In solution, proton NMR, and in particular IR spectroscopic studies support the interpretation of a high-spin state at ambient temperature throughout the series. The dependency of the spin state on the crystalline or dissolved state thus resembles that found for a similar series of halide derivatives before. In dichloromethane solution, the thiocyanato and selenocyanato complexes are very sensitive to aerial oxidation, forming oxacorrole and thiacorrole complexes as the only isolated products. These complexes show a S = 3/2 spin state in the solid as well as in solution, and their structural analyses prove the expected strong π-binding of the linear pseudohalide ion to the iron(III) central metal.
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Affiliation(s)
- Martin Bröring
- Institute of Inorganic and Analytical Chemistry, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
| | - Silke Köhler
- Institute of Inorganic and Analytical Chemistry, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
| | - Clemens Pietzonka
- Institute of Inorganic and Analytical Chemistry, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
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Mizutani T, Yagi S. Linear tetrapyrroles as functional pigments in chemistry and biology. J PORPHYR PHTHALOCYA 2012. [DOI: 10.1142/s1088424604000210] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
1,19,21,24-tetrahydro-1,19-bilindione is the framework of pigments frequently found in nature, which includes biliverdin IX α, phytochromobilin and phycocyanobilin. 1,19-bilindiones have unique features such as (1) photochemical and thermal cis-trans isomerization, (2) excited energy transfer, (3) chiroptical properties due to the cyclic helical conformation, (4) redox activity, (5) coordination to various metals, and (6) reconstitution to proteins. 1,19-bilindione can adopt a number of conformations since it has exocyclic three double bonds and three single bonds that are rotatable thermally and photochemically. In solution, biliverdin and phycocyanobilin adopt a cyclic helical ZZZ, syn, syn, syn conformation, but other conformations are stabilized depending on the experimental conditions and substituents on the bilin framework. The conformational changes in 1,19-bilindiones are related to the biological functions of a photoreceptor protein, phytochrome. Structural and conformational studies of bilindiones are summarized both in solution and in protein. The conformational changes of bilins can be used for other functions such as a chirality sensor. The bilindiones and the zinc complexes of bilindiones can be employed as a chirality sensor due to the helically chiral structure and the dynamics of racemization of enantiomers. In this paper, we discuss the conformational equilibria and dynamics of bilindiones and its implications in photobiology and materials science.
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Affiliation(s)
- Tadashi Mizutani
- Department of Molecular Science and Technology, Faculty of Engineering, Doshisha University, Kyotanabe, Kyoto 610-0321, Japan
| | - Shigeyuki Yagi
- Department of Applied Materials Science, Graduate School of Engineering, Osaka Prefecture University, Gakuen-cho, Sakai, Osaka 599-8531, Japan
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15
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Effect of the axial ligands on the structure and reactivity of tin verdoheme in the ring opening process. Inorganica Chim Acta 2010. [DOI: 10.1016/j.ica.2009.12.014] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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16
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Matsui T, Unno M, Ikeda-Saito M. Heme oxygenase reveals its strategy for catalyzing three successive oxygenation reactions. Acc Chem Res 2010; 43:240-7. [PMID: 19827796 DOI: 10.1021/ar9001685] [Citation(s) in RCA: 133] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Heme oxygenase (HO) is an enzyme that catalyzes the regiospecific conversion of heme to biliverdin IXalpha, CO, and free iron. In mammals, HO has a variety of physiological functions, including heme catabolism, iron homeostasis, antioxidant defense, cellular signaling, and O(2) sensing. The enzyme is also found in plants (producing light-harvesting pigments) and in some pathogenic bacteria, where it acquires iron from the host heme. The HO-catalyzed heme conversion proceeds through three successive oxygenations, a process that has attracted considerable attention because of its reaction mechanism and physiological importance. The HO reaction is unique in that all three O(2) activations are affected by the substrate itself. The first step is the regiospecific self-hydroxylation of the porphyrin alpha-meso carbon atom. The resulting alpha-meso-hydroxyheme reacts in the second step with another O(2) to yield verdoheme and CO. The third O(2) activation, by verdoheme, cleaves its porphyrin macrocycle to release biliverdin and free ferrous iron. In this Account, we provide an overview of our current understanding of the structural and biochemical properties of the complex self-oxidation reactions in HO catalysis. The first meso-hydroxylation is of particular interest because of its distinct contrast with O(2) activation by cytochrome P450. Although most heme enzymes oxidize exogenous substrates by high-valent oxo intermediates, HO was proposed to utilize the Fe-OOH intermediate for the self-hydroxylation. We have succeeded in preparing and characterizing the Fe-OOH species of HO at low temperature, and an analysis of its reaction, together with mutational and crystallographic studies, reveals that protonation of Fe-OOH by a distal water molecule is critical in promoting the unique self-hydroxylation. The second oxygenation is a rapid, spontaneous auto-oxidation of the reactive alpha-meso-hydroxyheme; its mechanism remains elusive, but the HO enzyme has been shown not to play a critical role in it. Until recently, the means of the third O(2) activation had remained unclear as well, but we have recently untangled its mechanistic outline. Reaction analysis of the verdoheme-HO complex strongly suggests the Fe-OOH species as a key intermediate of the ring-opening reaction. This mechanism is very similar to that of the first meso-hydroxylation, including the critical roles of the distal water molecule. A comprehensive study of the three oxygenations of HO highlights the rational design of the enzyme architecture and its catalytic mechanism. Elucidation of the last oxygenation step has enabled a kinetic analysis of the rate-determining step, making it possible to discuss the HO reaction mechanism in relation to its physiological functions.
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Affiliation(s)
- Toshitaka Matsui
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan
| | - Masaki Unno
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan
| | - Masao Ikeda-Saito
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan
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17
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Gheidi M, Safari N, Zahedi M. Theoretical investigation of the ring opening process of verdoheme to biliverdin in the presence of dioxygen. J Mol Model 2010; 16:1401-13. [DOI: 10.1007/s00894-010-0644-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2009] [Accepted: 12/10/2009] [Indexed: 10/19/2022]
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18
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Bröring M, Köhler S, Ostapowicz T, Funk M, Pietzonka C. Preparation, Magnetic and Structural Study on Oxido‐Bridged Diiron(III) Complexes with Open‐Chain Tetrapyrrolic 2,2′‐Bidipyrrin Ligands. Eur J Inorg Chem 2009. [DOI: 10.1002/ejic.200900405] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Martin Bröring
- Fachbereich Chemie, Philipps‐Universität Marburg, Hans‐Meerwein‐Str., 35032 Marburg, Germany, Fax: +49‐6421‐282‐5653
| | - Silke Köhler
- Fachbereich Chemie, Philipps‐Universität Marburg, Hans‐Meerwein‐Str., 35032 Marburg, Germany, Fax: +49‐6421‐282‐5653
| | - Thomas Ostapowicz
- Fachbereich Chemie, Philipps‐Universität Marburg, Hans‐Meerwein‐Str., 35032 Marburg, Germany, Fax: +49‐6421‐282‐5653
| | - Markus Funk
- Fachbereich Chemie, Philipps‐Universität Marburg, Hans‐Meerwein‐Str., 35032 Marburg, Germany, Fax: +49‐6421‐282‐5653
| | - Clemens Pietzonka
- Fachbereich Chemie, Philipps‐Universität Marburg, Hans‐Meerwein‐Str., 35032 Marburg, Germany, Fax: +49‐6421‐282‐5653
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19
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Davari MD, Bahrami H, Zahedi M, Safari N. Theoretical investigations on the hydrolysis pathway of tin verdoheme complexes: elucidation of tin's ring opening inhibition role. J Mol Model 2009; 15:1299-315. [PMID: 19373497 DOI: 10.1007/s00894-009-0495-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2009] [Accepted: 02/25/2009] [Indexed: 12/24/2022]
Abstract
In order to obtain a better molecular understanding of inhibitory role of tin metal in the verdoheme ring opening process, hydrolysis of three possibly six, five, and four coordinate verdoheme complexes of tin(IV) and (II) have been studied using DFT method. The results of calculations indicate that, in excellent accord with experimental reports, hydrolysis of different possibly coordinated tin(IV) and (II) verdohemes does not lead to the opening of the macrocycle. Contrary to iron and zinc verdohemes, in five and four coordinate verdoheme complexes of tin(IV) and (II), formation of open ring helical complexes of tin are unfavorable both thermodynamically and kinetically. In these pathways, coordination of hydroxide nucleophile to tin metal due to the highly charged, exclusive oxophilicity nature of the Sn center, and high affinity of Sn to increase coordination state are proposed responsible as inhibiting roles of tin via the ring opening. While, in saturated six coordinate tin(IV) and (II) verdoheme complexes the ring opening of tin verdohemes is possible thermodynamically, but it is not predicted to occur from a kinetics point of view. In the six coordinate pathway, tin plays no coordination role and direct addition of hydroxide nucleophile to the positive oxo-carbon centers and formation of closed ring hydroxy compounds is proposed for preventing the verdoheme ring opening. These key points and findings have been corroborated by the results obtained from atomic charge analysis, geometrical parameters, and molecular orbital calculations. In addition, the results of inhibiting ring opening reaction of tin verdoheme complexes could support the great interest of tin porphyrin analogues as pharmacologic means of chemoprevention of neonatal jaundice by the competitive inhibitory action of tin porphyrins on heme oxygenase.
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Affiliation(s)
- Mahdi D Davari
- Department of Chemistry, Faculty of Sciences, Shahid Beheshti University, Tehran, Iran
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Bröring M, Köhler S. [(bdp)FeBr]: Structural Determination of a Polymorphic Iron Chelate with an Open-Chain Tetrapyrrolic Ligand. Z Anorg Allg Chem 2008. [DOI: 10.1002/zaac.200800111] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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21
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Bröring M, Köhler S, Link S, Burghaus O, Pietzonka C, Kelm H, Krüger HJ. Iron Chelates of 2,2′-Bidipyrrin: Stable Analogues of the Labile Iron Bilins. Chemistry 2008; 14:4006-16. [DOI: 10.1002/chem.200701919] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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22
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Jamaat PR, Safari N, Ghiasi M, Naghavi SSAD, Zahedi M. Noninnocent effect of axial ligand on the heme degradation process: a theoretical approach to hydrolysis pathway of verdoheme to biliverdin. J Biol Inorg Chem 2007; 13:121-32. [DOI: 10.1007/s00775-007-0308-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2007] [Accepted: 09/21/2007] [Indexed: 11/24/2022]
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23
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Pacholska‐Dudziak E, Latos‐Grażyński L. NMR Studies of Paramagnetic Metallocarbaporphyrinoids. Eur J Inorg Chem 2007. [DOI: 10.1002/ejic.200700078] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Ewa Pacholska‐Dudziak
- Department of Chemistry, University of Wrocław, 14 F. Joliot‐Curie St., Wrocław 50 383, Poland
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24
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Wood TE, Thompson A. Advances in the chemistry of dipyrrins and their complexes. Chem Rev 2007; 107:1831-61. [PMID: 17430001 DOI: 10.1021/cr050052c] [Citation(s) in RCA: 504] [Impact Index Per Article: 29.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tabitha E Wood
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, B3H 4J3, Canada
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25
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Gheidi M, Safari N, Bahrami H, Zahedi M. Theoretical investigations of the hydrolysis pathway of verdoheme to biliverdin. J Inorg Biochem 2006; 101:385-95. [PMID: 17197029 DOI: 10.1016/j.jinorgbio.2006.10.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2005] [Revised: 10/19/2006] [Accepted: 10/27/2006] [Indexed: 10/23/2022]
Abstract
Conversion of iron(II) verdoheme to iron biliverdin in the presence of OH(-) was investigated using B3LYP method. Both 3-21G and 6-31G* basis sets were employed for geometry optimization calculation as well as energy stabilization estimation. Calculation at 6-31G* level was found necessary for a correct spin state estimation of the iron complexes. Two possible pathways for the conversion of iron verdoheme to iron biliverdin were considered. In one path the iron was six-coordinate while in the other it was considered to be five-coordinate. In the six-coordinated pathway, the ground state of bis imidazole iron verdoheme is singlet while that for open chain iron biliverdin it is triplet state with 4.86 kcal/mol more stable than the singlet state. The potential energy surface suggests that a spin inversion take place during the course of reaction after TS. The ring opening process in the six-coordinated pathway is in overall -2.26 kcal/mol exothermic with a kinetic barrier of 9.76 kcal/mol. In the five-coordinated pathway the reactant and product are in the ground triplet state. In this path, hydroxyl ion attacks the iron center to produce a complex, which is only 1.59 kcal/mol more stable than when OH(-) directly attacks the macrocycle. The activation barrier for the conversion of iron hydroxy species to the iron biliverdin complex by a rebound mechanism is estimated to be 32.68 kcal/mol. Large barrier for rebound mechanism, small barrier of 4.18 kcal/mol for ring opening process of the hydroxylated macrocycle, and relatively same stabilities for complexes resulted by the attack of nucleophile to the iron and macrocycle indicate that five-coordinated pathway with direct attack of nucleophile to the 5-oxo position of macrocycle might be the path for the conversion of verdoheme to biliverdin.
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Affiliation(s)
- Mahin Gheidi
- Department of Chemistry, Faculty of Sciences, Shahid Beheshti University, Evin 19839-63113, Tehran, Iran
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26
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Bahrami H, Zahedi M, Safari N. Theoretical investigations of the reactivity of verdoheme analogues: opening of the planar macrocycle by amide, dimethyl amide, and hydroxide nucleophiles to form helical biliverdin type complexes. J Inorg Biochem 2006; 100:1449-61. [PMID: 16781778 DOI: 10.1016/j.jinorgbio.2006.04.010] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2005] [Revised: 04/17/2006] [Accepted: 04/17/2006] [Indexed: 11/13/2022]
Abstract
Nucleophilic addition reactions of NH(2)(-),NMe(2)(-) and OH(-) to a zinc(II) verdoheme complex have been investigated using B3LYP method. Results show that presence of zinc(II) ion in the center of macrocycle leads to an increase of positive charge on the carbon atoms adjacent to the oxygen in the zinc(II) verdoheme complex relative to the free 5-oxaporphyrin macrocycle. It has been determined that an intermediate is initially formed by nucleophilic attack to one of aforementioned carbon atoms. This intermediate is then directly converted to helical open-ring complex [Zn(II)(OEBNü)] or [Zn(II)(BNü)] by passing through a transition state. Even though the most positive center for the nucleophile to attack is the zinc ion of zinc(II) verdoheme, it has been shown that such addition does not lead to a stable intermediate. Thus the zinc atom has no coordination role in transferring the nucleophiles to the oxo-carbon, but it just has the effect of activating oxo-carbon for nucleophile addition. The following order of nucleophile strength has been obtained: NH(2)(-) > NMe(2)(-) > OH(-) NBO analysis has shown that interaction of nucleophile with the zinc ion of zinc(II) verdoheme complex decreases charge transfer of porphyrin ring to the zinc. This can be translated as an effective perturbation in the complex planar structure and thus an unstable intermediate. Even though the NBO analysis has demonstrated that bond strength of the oxo-carbon with the oxygen atom in the zinc(II) verdoheme is diminished when nucleophile has connected to the oxo-carbon, a relatively more stable intermediate is formed. Besides, it has been illustrated that molecular orbital calculations satisfy the NBO findings.
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Affiliation(s)
- Homayoon Bahrami
- Department of Chemistry, Faculty of Sciences, Shahid Beheshti University, Evin, 19839-63113, Tehran, Iran
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27
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Matsui T, Nakajima A, Fujii H, Matera KM, Migita CT, Yoshida T, Ikeda-Saito M. O(2)- and H(2)O(2)-dependent verdoheme degradation by heme oxygenase: reaction mechanisms and potential physiological roles of the dual pathway degradation. J Biol Chem 2005; 280:36833-40. [PMID: 16115896 DOI: 10.1074/jbc.m503529200] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Heme oxygenase (HO) catalyzes the catabolism of heme to biliverdin, CO, and a free iron through three successive oxygenation steps. The third oxygenation, oxidative degradation of verdoheme to biliverdin, has been the least understood step despite its importance in regulating HO activity. We have examined in detail the degradation of a synthetic verdoheme IXalpha complexed with rat HO-1. Our findings include: 1) HO degrades verdoheme through a dual pathway using either O(2) or H(2)O(2); 2) the verdoheme reactivity with O(2) is the lowest among the three O(2) reactions in the HO catalysis, and the newly found H(2)O(2) pathway is approximately 40-fold faster than the O(2)-dependent verdoheme degradation; 3) both reactions are initiated by the binding of O(2) or H(2)O(2) to allow the first direct observation of degradation intermediates of verdoheme; and 4) Asp(140) in HO-1 is critical for the verdoheme degradation regardless of the oxygen source. On the basis of these findings, we propose that the HO enzyme activates O(2) and H(2)O(2) on the verdoheme iron with the aid of a nearby water molecule linked with Asp(140). These mechanisms are similar to the well established mechanism of the first oxygenation, meso-hydroxylation of heme, and thus, HO can utilize a common architecture to promote the first and third oxygenation steps of the heme catabolism. In addition, our results infer the possible involvement of the H(2)O(2)-dependent verdoheme degradation in vivo, and potential roles of the dual pathway reaction of HO against oxidative stress are proposed.
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Affiliation(s)
- Toshitaka Matsui
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan
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Rath SP, Olmstead MM, Balch AL. Oxidative Verdoheme Formation and Stabilization by Axial Isocyanide Ligation. Inorg Chem 2004; 43:7648-55. [PMID: 15554629 DOI: 10.1021/ic0491433] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The effect of isocyanides as axial ligands on the formation and stability of verdoheme by oxidation has been examined. The reaction of [Fe(III)(OEPO)]2 with t-butyl isocyanide under dioxygen-free conditions results in the formation of (t-BuNC)2Fe(II)(OEPO*) with an electron paramagnetic resonance at g=2.009 with a peak-to-peak separation of 23.5 G at 4 K. (OEPO is the trianion of octaethyloxophlorin and OEPO* is the radical dianion obtained from OEPO by one-electron oxidation.) Exposure of chloroform solutions of either (2,6-xylylNC)2Fe(II)(OEPO*) or (t-BuNC)2Fe(II)(OEPO*) to dioxygen followed by the addition of ammonium hexafluorophosphate results in their transformation into the diamagnetic verdohemes, [(2,6-xylylNC)2Fe(II)(OEOP)](PF6) and [(t-BuNC)2Fe(II)(OEOP)](PF6), yields 68 and 70%, respectively. (OEOP is the anion of octaethyl-5-oxaporphyrin.) The oxidation reactions of (2,6-xylylNC)2Fe(II)(OEPO*) and (t-BuNC)2Fe(II)(OEPO*) have also been monitored by 1H NMR spectroscopy. No resonances due to paramagnetic products could be detected, the reactions appear to result only in the formation of the diamagnetic verdohemes, and the products are not susceptible to further oxidation.
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Affiliation(s)
- Sankar Prasad Rath
- Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616, USA
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29
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Nguyen KT, Rath SP, Latos-Grazyński L, Olmstead MM, Balch AL. Formation of a Highly Oxidized Iron Biliverdin Complex upon Treatment of a Five-Coordinate Verdoheme with Dioxygen. J Am Chem Soc 2004; 126:6210-1. [PMID: 15149200 DOI: 10.1021/ja049222d] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Treatment of a green solution of the five-coordinate octaethylverdoheme, XFeII(OEOP) 1 (X = Cl or Br), with dioxygen results in the formation of a new iron complex of octaethylbiliverdin, 2, within a matter of minutes. The reaction has been monitored by 1H NMR spectroscopy, and the product 2 (X = Cl) has been isolated and examined by X-ray crystallography. The structure of 2 (X = Cl) shows that the iron is five-coordinate with bonds to the four nitrogen atoms of the helical tetrapyrrole ligand and to an axial chloride. Treatment of 2 (X = Cl or Br) with zinc amalgam produces the known iron(III) complex of biliverdin, {FeIII(OEB)}2. The unusual pattern of resonances in the 1H NMR spectrum of 2 and its facile reduction to {FeIII(OEB)}2 indicate that 2 is an oxidized complex that can be formulated by resonance structures involving either an Fe(IV) ion bound to a bilindione trianion or an Fe(III) ion bound to an oxidized, dianionic, radical form of the ligand.
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Affiliation(s)
- Khoi T Nguyen
- Department of Chemistry, University of California, Davis, One Shields Avenue, Davis, California 95616, USA
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30
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Sugishima M, Sakamoto H, Higashimoto Y, Noguchi M, Fukuyama K. Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate. Conformational change of the distal helix during the heme cleavage reaction. J Biol Chem 2003; 278:32352-8. [PMID: 12794075 DOI: 10.1074/jbc.m303682200] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate (biliverdin(Fe)-HO-1), the immediate precursor of the final product, biliverdin, has been determined at a 2.4-A resolution. The electron density in the heme pocket clearly showed that the tetrapyrrole ring of heme is cleaved at the alpha-meso edge. Like the heme bound to HO-1, biliverdin-iron chelate is located between the distal and proximal helices, but its accommodation state seems to be less stable in light of the disordering of the solvent-exposed propionate and vinyl groups. The middle of the distal helix is shifted away from the center of the active site in biliverdin(Fe)-HO-1, increasing the size of the heme pocket. The hydrogen-bonding interaction between Glu-29 and Gln-38, considered to restrain the orientation of the proximal helix in the heme-HO-1 complex, was lost in biliverdin(Fe)-HO-1, leading to relaxation of the helix. Biliverdin has a distorted helical conformation; the lactam oxygen atom of its pyrrole ring-A interacted with Asp-140 through a hydrogen-bonding solvent network. Because of the absence of a distal water ligand, the iron atom is five-coordinated with His-25 and four pyrrole nitrogen atoms. The coordination geometry deviates considerably from a square pyramid, suggesting that the iron may be readily dissociated. We speculate that the opened conformation of the heme pocket facilitates sequential product release, first iron then biliverdin, and that because of biliverdin's increased flexibility, iron release triggers its slow dissociation.
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Affiliation(s)
- Masakazu Sugishima
- Department of Biology, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
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31
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Zahedi M, Bahrami H, Shahbazian S, Safari N, Ng SW. An ab initio/hybrid (ONIOM) investigation of biliverdin isomers and metal–biliverdin analogue complexes. ACTA ACUST UNITED AC 2003. [DOI: 10.1016/s0166-1280(03)00271-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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32
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Szterenberg L, Latos-Grazyński L, Wojaczyński J. Metallobiliverdin radicals--DFT studies. Chemphyschem 2003; 4:691-8. [PMID: 12901300 DOI: 10.1002/cphc.200200611] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Several aspects of the molecular and electronic structure of biliverdin derivatives have been studied using density functional theory (DFT). The calculations have been performed for complexes of trianion (BvO2)3- and dianion [BvO(OH)]2-, derived from two tautomeric forms of biliverdin, BvO2H3 and [BvO(OH)]H2, with redox innocent metal ions: lithium(I), zinc(II), and gallium(III). One-electron-oxidized and reduced forms of each complex (cation and anion radicals) have been also considered. The molecular structures of all species investigated are characterized by a helical arrangement of tetrapyrrolic ligands with the metal ion lying in the plane formed by the two central pyrrole rings. The spin density distribution in four types of metallobiliverdin radicals--[(BvO2.)Mn+]n-2,[[BvO(OH).]Mn+]n-1 (cation radicals),[(BvO2.)Mn+]n-4,[[BvO(OH).]Mn+]n-3 (anion radicals)--has been investigated. In general, the absolute values of spin density on meso carbon atoms were larger than for the beta-carbon atoms. Sign alteration of spin density has been found for meso positions, and also for the beta-carbon atoms of at least two pyrrole rings. The calculated spin density maps accounted for the essential NMR spectroscopic features of iron biliverdin derivatives, including the considerable isotropic shifts detected for the meso resonances and shift alteration at the meso and beta-positions.
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Affiliation(s)
- Ludmiła Szterenberg
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-383 Wrocław, Poland
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Lord PA, Latos-Grazyński L, Balch AL. Reactivity of iron verdohemes with phenylmagnesium bromide. Formation of paramagnetic iron-phenyl complexes. Inorg Chem 2002; 41:1011-4. [PMID: 11849107 DOI: 10.1021/ic010948+] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pamela A Lord
- Department of Chemistry, University of California, Davis, California 95616, USA
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34
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Johnson JA, Olmstead MM, Stolzenberg AM, Balch AL. Ring-opening and meso substitution from the reaction of cyanide ion with zinc verdohemes. Inorg Chem 2001; 40:5585-95. [PMID: 11599958 DOI: 10.1021/ic0103300] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The reactivity of zinc verdoheme, [Zn(II)(OEOP)](O(2)CCH(3)) where OEOP is the monoanion of octaethyl-5-oxaporphyrin, with cyanide ion has been shown to be a complex process that involves not only the expected ring-opening of the macrocycle, as occurs with other nucleophiles (methoxide, methanethiolate, dimethylamide), but also substitution at one or two of the meso positions. The ring-opened products have been subjected to crystallographic study. The structures of mu-H(2)O-[Zn(II)(OEB-10,19-(CN)(2))](2) and mu-H(2)O-[(Zn(II)(OEB-10,15,19-(CN)(3))](2) both consist of two helical tetrapyrrole subunits that are coordinated to a zinc ion through four Zn-N bonds. The two zinc ions are coordinated to a bridging water molecule that is also hydrogen bonded to a lactam oxygen atom at one end of each tetrapyrrole subunit. Thus the chiral sense of one helical Zn(II)(OEB-10,19-(CN)(2)) portion is transmitted to the other Zn(II)(OEB-10,19-(CN)(2)) unit and the resulting binuclear unit is chiral. In contrast Co(II)(OEB-15,19-(CN)(2)), which was obtained by the insertion of Co(II) into the free ligand, is monomeric with a four-coordinate cobalt ion. A series of DFT geometry optimization calculations were performed on zinc complexes of 5-oxaporphyrins (verdoheme), verdins (bilindione), 4-cyano-5-oxaporphyrins, and 19-cyanoverdins in an effort to gain insights to the features of these complexes and the reactions that lead to meso-cyano-substituted cyanoverdins.
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Affiliation(s)
- J A Johnson
- Department of Chemistry, University of California, Davis, California 95616, USA
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35
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Latos-Grazyński L, Wojaczyński J, Koerner R, Johnson JJ, Balch AL. Verdoheme reactivity. Remarkable paramagnetically shifted (1)H NMR spectra of intermediates from the addition of hydroxide or methoxide with Fe(II) and Fe(III) verdohemes. Inorg Chem 2001; 40:4971-7. [PMID: 11531446 DOI: 10.1021/ic010227a] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Studies of the reaction of 5-oxaporphyrin iron complexes (verdohemes) with methoxide ion or hydroxide ion have been undertaken to understand the initial step of ring opening of verdohemes. High-spin [ClFe(III)(OEOP)] undergoes a complex series of reactions upon treatment with hydroxide ion in chloroform, and similar species are also detected in dichloromethane, acetonitrile, and dimethyl sulfoxide. Three distinct paramagnetic intermediates have been identified by (1)H NMR spectroscopy. These reactive species are formed by addition of hydroxide to the macrocycle and to the iron as an axial ligand. Treatment of low-spin [(py)(2)Fe(II)(OEOP)]Cl (OEOP is the monoanion of octaethyl-5-oxaporphyrin) with excess methoxide ion in pyridine solution produces [(py)(n)()Fe(II)(OEBOMe)] (n = 1 or 2) ((OEBOMe), dianion of octaethylmethoxybiliverdin), whose (1)H NMR spectrum undergoes marked alteration upon addition of further amounts of methoxide ion. An identical (1)H NMR spectrum, which is characterized by methylene resonances with both upfield and downfield paramagnetic shifts, is formed upon treatment of [Fe(II)(OEBOMe)](2) with methoxide in pyridine solution and results from the formation of [(MeO)Fe(II)(OEBOMe)](-).
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Affiliation(s)
- L Latos-Grazyński
- Department of Chemistry, University of California, Davis, California 95616, USA
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36
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Phillips S, Noll BC, Olmstead MM, Balch AL. Oxidation of copper(II) hydroxyporphyrin (oxophlorin); oxidative ring opening and formation of an ester-linked, dinuclear copper complex. CAN J CHEM 2001. [DOI: 10.1139/v01-042] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Addition of copper(II) acetate to octaethyl(meso-hydroxy)porphyrin (H2OEPOH) in THF under a dinitrogen atmosphere produces CuII(OEPOH), which has been isolated as red crystals and shown to have a meso-hydroxyporphyrin structure by UV-vis and EPR spectroscopy. CuII(OEPOH) undergoes oxidation by dioxygen to form a novel dinuclear copper complex {CuII(OEPOC(O)OEB)CuII}. This dinuclear complex is composed of a copper(II) meso-substituted porphyrin portion (with a planar CuN4 unit), which is attached through an ester linkage to a helical copper(II) tetrapyrrole that has been ring-opened through oxidative cleavage of a second molecule of CuII(OEPOH). The oxidative ring-opening reaction resembles that of natural heme catabolism but is arrested at a stage where the oxidized meso-carbon is still appended to the helical open tetrapyrrole. A mechanism is suggested for this process.Key words: copper porphyrin, crystal structure, porphyrin oxidation, linear tetrapyrrole, hydroxy-porphyrin, oxophlorin.
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Sakamoto H, Omata Y, Adachi Y, Palmer G, Noguchi M. Separation and identification of the regioisomers of verdoheme by reversed-phase ion-pair high-performance liquid chromatography, and characterization of their complexes with heme oxygenase. J Inorg Biochem 2000; 82:113-21. [PMID: 11132617 DOI: 10.1016/s0162-0134(00)00149-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
We report an HPLC method for separating the four regioisomers of verdoheme formed in the coupled oxidation of hemin with oxygen and ascorbate in aqueous pyridine. The reversed-phase ion-pair system uses hexafluoroacetone and pyridine as ion-pair agents. The regiochemistry of the separated isomers was established both by HPLC of the corresponding biliverdin IX derivatives and by 1H NMR of each isomer. Optical spectra of the pyridine verdohemochrome isomers were similar to each other, but showed differences in the absorption maxima in the red region, which appear at 680, 663, 648 and 660 nm for the alpha, beta, gamma, and delta-isomers, respectively. Each of the four isomers was incorporated anaerobically into heme oxygenase-1, yielding the corresponding verdoheme-enzyme complex. The ferrous forms had absorption maxima at 690, 667, 655, and 663 nm, and their CO-bound forms had maxima at 638, 624, 616, and 626 nm for alpha, beta, gamma, and delta-isomer, respectively. Addition of ferricyanide to the alpha-verdoheme-heme oxygenase complex brought about a ferric low-spin heme-like signal, which is identical with the ferric alpha-verdoheme complexed with the heme oxygenase that was observed in the heme oxygenase reaction.
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Affiliation(s)
- H Sakamoto
- Department of Medical Biochemistry, Kurume University School of Medicine, Japan.
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38
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Johnson JA, Olmstead MM, Balch AL. Reactivity of the Verdoheme Analogues. Opening of the Planar Macrocycle by Amide and Thiolate Nucleophiles To Form Helical Complexes. Inorg Chem 1999. [DOI: 10.1021/ic9904283] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James A. Johnson
- Department of Chemistry, University of California, Davis, California 95616
| | | | - Alan L. Balch
- Department of Chemistry, University of California, Davis, California 95616
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Lord P, Olmstead MM, Balch AL. Tetrapyrrole als π-Donoren: ein Sandwichkomplex aus einer Pd22+-Einheit und zwei helicalen Bilindion-Palladium-Liganden. Angew Chem Int Ed Engl 1999. [DOI: 10.1002/(sici)1521-3757(19990917)111:18<2930::aid-ange2930>3.0.co;2-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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