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Gao LG, Fleming DG, Truhlar DG, Xu X. Large Anharmonic Effects on Tunneling and Kinetics: Reaction of Propane with Muonium. J Phys Chem Lett 2021; 12:4154-4159. [PMID: 33890795 DOI: 10.1021/acs.jpclett.1c01229] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Calculations of kinetic isotope effects (KIEs) provide challenging tests of quantal mass effects on reaction rates, and muonium KIEs are the most challenging. Here, we show that it can be very important to include reaction-coordinate-dependent vibrational anharmonicity along the whole reaction path to calculate tunneling probabilities and KIEs. For the reaction of propane with Mu, this decreases both the height and width of the vibrationally adiabatic potential barrier, with both effects increasing the rate constants. Our results agree well with the experimental observations.
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Affiliation(s)
- Lu Gem Gao
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Donald G Fleming
- TRIUMF and Department of Chemistry, University of British Columbia, 4004 Wesbrook Mall, Vancouver, BC V6T 1Z4, Canada
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Xuefei Xu
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
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2
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Fleming DG, Arseneau DJ, Cottrell SP, Peck JNT. Rate constants and kinetic isotope effects for H-atom abstraction reactions by muonium in the Mu + propane and Mu + n-butane reactions from 300 K to 435 K: challenges for theory. Phys Chem Chem Phys 2020; 22:6326-6334. [DOI: 10.1039/c9cp06822h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This paper reports measurements of the temperature dependence of the rate constants for H-atom abstraction reactions from propane and n-butane by the light isotopic H-atom muonium (Mu), kMu(T), over temperatures in the range 300 K to 435 K.
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Affiliation(s)
- Donald G. Fleming
- TRIUMF and Department of Chemistry
- University of British Columbia
- Vancouver
- Canada
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3
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Soler J, González-Lafont À, Lluch JM. A protocol to obtain multidimensional quantum tunneling corrections derived from QM(DFT)/MM calculations for an enzyme reaction. Phys Chem Chem Phys 2020; 22:27385-27393. [DOI: 10.1039/d0cp05265e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The multidimensional small-curvature tunneling (SCT) method with Electrostatic Embedding calculations is a compromise between an accessible computational cost and the attainment of an accurate enough estimation of tunneling for an enzyme reaction.
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Affiliation(s)
- Jordi Soler
- Departament de Química Universitat Autònoma de Barcelona
- Bellaterra
- Spain
| | - Àngels González-Lafont
- Departament de Química Universitat Autònoma de Barcelona
- Bellaterra
- Spain
- Institut de Biotecnologia i de Biomedicina (IBB)
- Universitat Autònoma de Barcelona
| | - José M. Lluch
- Departament de Química Universitat Autònoma de Barcelona
- Bellaterra
- Spain
- Institut de Biotecnologia i de Biomedicina (IBB)
- Universitat Autònoma de Barcelona
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4
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González-Lafont À, Lluch JM. Kinetic isotope effects in chemical and biochemical reactions: physical basis and theoretical methods of calculation. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1268] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Àngels González-Lafont
- Institut de Biotecnologia i de Biomedicina and Departament de Química; Universitat Autònoma de Barcelona; Bellaterra, Barcelona Spain
| | - José M. Lluch
- Institut de Biotecnologia i de Biomedicina and Departament de Química; Universitat Autònoma de Barcelona; Bellaterra, Barcelona Spain
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5
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Abstract
The reactions of H atoms with solid thin films at 10 K were studied by using thermal desorption mass spectrometry and FT-IR spectroscopy. The N, C, and O atoms trapped in solid matrices were converted efficiently to fully hydrogenated compounds. In the reaction of H atoms with a solid CO film, the formation of formaldehyde and methanol were confirmed. The relatively low yield of the reaction products suggests either the smaller rate constants of the H atom addition reactions to CO and/or the occurrence of the hydrogen abstraction reaction H + HCO → H2+ CO. The reactions of H atoms with thin films of acetone and 2-propanol were also studied. The major products from acetone were found to be methane and alcohols but 2-propanol was not detected as a reaction product. The reaction of H with 2-propanol led to the formation of methane, alcohols, and acetone as major products.In the reaction of H with C2H2, C2H6was found to be the major product but C2H4could not be detected. This is due to the fact that the first-step addition reaction H + C2H2→ C2H3is the rate-controlling process and the following reactions to form the final product C2H6proceed much faster than the initial one. This finding is in accord with the observation of comets Hyakutake and Hale-Bopp, i.e., C2H2and C2H6but not C2H4were detected in the coma of these comets. In the reactions of H with C2H2and C2H4, the C2H6product yields increased drastically with decrease of temperature from 50 to 10 K. This is most likely due to the increase of the sticking probability of H atoms on the solid films at lower temperature. These findings led us to conclude that the chemical evolution taking place on the dust grains via H-atom tunneling reactions becomes efficient only at cryogenic temperatures, i.e., ~ 10 K.
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Arseneau DJ, Garner DM, Reid ID, Fleming DG. Muonium Addition Reactions and Kinetic Isotope Effects in the Gas Phase: k∞ Rate Constants for Mu + C2H2. J Phys Chem A 2015; 119:7247-56. [DOI: 10.1021/jp511604q] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Donald J. Arseneau
- TRIUMF and Department of
Chemistry, University of British Columbia, Vancouver, BC, Canada
| | - David M. Garner
- TRIUMF and Department of
Chemistry, University of British Columbia, Vancouver, BC, Canada
| | - Ivan D. Reid
- TRIUMF and Department of
Chemistry, University of British Columbia, Vancouver, BC, Canada
| | - Donald G. Fleming
- TRIUMF and Department of
Chemistry, University of British Columbia, Vancouver, BC, Canada
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8
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Fleming DG, Arseneau DJ, Sukhorukov O, Brewer JH, Mielke SL, Truhlar DG, Schatz GC, Garrett BC, Peterson KA. Kinetics of the reaction of the heaviest hydrogen atom with H2, the4Heμ + H2→4HeμH + H reaction: Experiments, accurate quantal calculations, and variational transition state theory, including kinetic isotope effects for a factor of 36.1 in isotopic mass. J Chem Phys 2011; 135:184310. [DOI: 10.1063/1.3657440] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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10
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Ganzález-Lafont A, Moreno M, Lluch JM. Variational Transition State Theory as a Tool To Determine Kinetic Selectivity in Reactions Involving a Valley-Ridge Inflection Point. J Am Chem Soc 2004; 126:13089-94. [PMID: 15469307 DOI: 10.1021/ja039561r] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Variational transition state theory has been used to calculate the kinetic isotope effects affecting product ratios in the reaction between (1)O(2) and d(6)-tetramethylethylene. The minimum energy path on the potential energy surface for this process reaches a valley-ridge inflection point and then bifurcates leading to the two final products. Using canonical variational transition state theory, two distinct dynamical bottlenecks were located corresponding to the H- and the D-abstraction, respectively. The calculated KIE at 263 K turns out to be 1.126. Analogously, a H/T KIE of 1.17 at the same temperature has been found for the reaction of (1)O(2) with the tritiated derivative of tetramethylethylene.
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Affiliation(s)
- Angels Ganzález-Lafont
- Contribution from the Departament de Química, Universitat Autonoma de Barcelona, 08193 Bellaterra (Barcelona), Spain
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12
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Villà J, Corchado JC, González-Lafont A, Lluch JM, Truhlar DG. Variational Transition-State Theory with Optimized Orientation of the Dividing Surface and Semiclassical Tunneling Calculations for Deuterium and Muonium Kinetic Isotope Effects in the Free Radical Association Reaction H + C2H4 → C2H5. J Phys Chem A 1999. [DOI: 10.1021/jp990970c] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Jordi Villà
- Unitat de Química Física, Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain, Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, Grup de Recerca en Informàtica Mèdica, Institut Municipal d'Investigació Mèdica, IMIM, Doctor Aiguader 80, 08003 Barcelona, Spain, and Departamento de Química Física, Universidad de Extremadura, 06071 Badajoz, Spain
| | - José C. Corchado
- Unitat de Química Física, Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain, Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, Grup de Recerca en Informàtica Mèdica, Institut Municipal d'Investigació Mèdica, IMIM, Doctor Aiguader 80, 08003 Barcelona, Spain, and Departamento de Química Física, Universidad de Extremadura, 06071 Badajoz, Spain
| | - Angels González-Lafont
- Unitat de Química Física, Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain, Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, Grup de Recerca en Informàtica Mèdica, Institut Municipal d'Investigació Mèdica, IMIM, Doctor Aiguader 80, 08003 Barcelona, Spain, and Departamento de Química Física, Universidad de Extremadura, 06071 Badajoz, Spain
| | - José M. Lluch
- Unitat de Química Física, Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain, Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, Grup de Recerca en Informàtica Mèdica, Institut Municipal d'Investigació Mèdica, IMIM, Doctor Aiguader 80, 08003 Barcelona, Spain, and Departamento de Química Física, Universidad de Extremadura, 06071 Badajoz, Spain
| | - Donald G. Truhlar
- Unitat de Química Física, Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain, Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, Grup de Recerca en Informàtica Mèdica, Institut Municipal d'Investigació Mèdica, IMIM, Doctor Aiguader 80, 08003 Barcelona, Spain, and Departamento de Química Física, Universidad de Extremadura, 06071 Badajoz, Spain
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