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Zhu L, Chen X, Feng J, Cui Y, Wu Q, Zhu D. Semirational Engineering of a Thermostable Carbonyl Reductase for the Precision Synthesis of (2 R,3 R)-2-Methyl-2-benzyl-3-hydroxycyclopentanone and Its Analogues. J Org Chem 2023; 88:11905-11912. [PMID: 37526991 DOI: 10.1021/acs.joc.3c01192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
2,2-Disubstituted-3-hydroxycyclopentanones are important chiral intermediates for natural products and pharmaceuticals. Through semirational engineering of a thermostable carbonyl reductase CBCR from Cupriavidus sp. BIS7, a mutant L91C/F93I was obtained. Mutant L91C/F93I showed 4- to 36-fold enhanced activities toward 2-methyl-2-benzyl-1,3-cyclopentanedione and its analogues, affording the (2R,3R)-stereoisomers with >99% ee and >99% de. Enzyme-substrate docking studies were performed to reveal the molecular basis for the activity and stereoselectivity improvements.
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Affiliation(s)
- Liangyan Zhu
- National Center of Technology Innovation for Synthetic Biology, National Engineering Research Center of Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xi Chen
- National Center of Technology Innovation for Synthetic Biology, National Engineering Research Center of Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinhui Feng
- National Center of Technology Innovation for Synthetic Biology, National Engineering Research Center of Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yunfeng Cui
- National Center of Technology Innovation for Synthetic Biology, National Engineering Research Center of Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Qiaqing Wu
- National Center of Technology Innovation for Synthetic Biology, National Engineering Research Center of Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Dunming Zhu
- National Center of Technology Innovation for Synthetic Biology, National Engineering Research Center of Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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2
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Noor R, Zahoor AF, Naqvi SAR, ul Haq A, Akhtar R. Synthetic potential of ring expansions of 5-membered carbo- & heterocycles: A review. SYNTHETIC COMMUN 2022. [DOI: 10.1080/00397911.2022.2047728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Rida Noor
- Department of Chemistry, Government College University Faisalabad, Faisalabad, Pakistan
| | - Ameer Fawad Zahoor
- Department of Chemistry, Government College University Faisalabad, Faisalabad, Pakistan
| | - Syed Ali Raza Naqvi
- Department of Chemistry, Government College University Faisalabad, Faisalabad, Pakistan
| | - Atta ul Haq
- Department of Chemistry, Government College University Faisalabad, Faisalabad, Pakistan
| | - Rabia Akhtar
- Department of Chemistry, Government College University Faisalabad, Faisalabad, Pakistan
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3
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Li J, Feng J, Chen X, Gong J, Cui Y, Zhang H, Bu D, Wu Q, Zhu D. Structure-Guided Directed Evolution of a Carbonyl Reductase Enables the Stereoselective Synthesis of (2S,3S)-2,2-Disubstituted-3-hydroxycyclopentanones via Desymmetric Reduction. Org Lett 2020; 22:3444-3448. [PMID: 32319785 DOI: 10.1021/acs.orglett.0c00892] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Juan Li
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, Beijing 100049, China
| | - Jinhui Feng
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
| | - Xi Chen
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
| | - Jingyao Gong
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
- Department of Medicinal Chemistry, School of Pharmacy Southwest Medical University, Luzhou, Sichuan 646000, China
| | - Yunfeng Cui
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
| | - Hongliu Zhang
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
| | - Dandan Bu
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
| | - Qiaqing Wu
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
| | - Dunming Zhu
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic
Area, Tianjin 300308, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, Beijing 100049, China
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4
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Kobayashi T, Yamanoue K, Abe H, Ito H. Diastereoselective Total Synthesis of (±)-Toxicodenane A. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701219] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Toyoharu Kobayashi
- School of Life Sciences; Tokyo University of Pharmacy and Life Sciences; 1432-1 Horinouchi, Hachioji 192-0392 Tokyo Japan
| | - Kotono Yamanoue
- School of Life Sciences; Tokyo University of Pharmacy and Life Sciences; 1432-1 Horinouchi, Hachioji 192-0392 Tokyo Japan
| | - Hideki Abe
- School of Life Sciences; Tokyo University of Pharmacy and Life Sciences; 1432-1 Horinouchi, Hachioji 192-0392 Tokyo Japan
| | - Hisanaka Ito
- School of Life Sciences; Tokyo University of Pharmacy and Life Sciences; 1432-1 Horinouchi, Hachioji 192-0392 Tokyo Japan
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5
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Tian C, Lei X, Wang Y, Dong Z, Liu G, Tang Y. Total Syntheses of Periconiasins A-E. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201602439] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Chong Tian
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
- Tsinghua-Peking Center for Life Sciences; School of Life Sciences; Tsinghua University; Beijing 100084 P.R. China
| | - Xiaoqiang Lei
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
| | - Yuanhao Wang
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
| | - Zhen Dong
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
| | - Gang Liu
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
- Tsinghua-Peking Center for Life Sciences; School of Life Sciences; Tsinghua University; Beijing 100084 P.R. China
| | - Yefeng Tang
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
- Collaborative Innovation Center for Biotherapy; State Key Laboratory of Biotherapy and Cancer Center; West China Hospital; West China Medical School; Sichuan University; Chengdu 610041 China
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6
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Tian C, Lei X, Wang Y, Dong Z, Liu G, Tang Y. Total Syntheses of Periconiasins A-E. Angew Chem Int Ed Engl 2016; 55:6992-6. [PMID: 27121397 DOI: 10.1002/anie.201602439] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Indexed: 02/05/2023]
Affiliation(s)
- Chong Tian
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
- Tsinghua-Peking Center for Life Sciences; School of Life Sciences; Tsinghua University; Beijing 100084 P.R. China
| | - Xiaoqiang Lei
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
| | - Yuanhao Wang
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
| | - Zhen Dong
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
| | - Gang Liu
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
- Tsinghua-Peking Center for Life Sciences; School of Life Sciences; Tsinghua University; Beijing 100084 P.R. China
| | - Yefeng Tang
- School of Pharmaceutical Sciences & Comprehensive AIDS Research Center; Tsinghua University; Beijing 100084 China
- Collaborative Innovation Center for Biotherapy; State Key Laboratory of Biotherapy and Cancer Center; West China Hospital; West China Medical School; Sichuan University; Chengdu 610041 China
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7
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Mita T, Suga K, Sato K, Sato Y. A Strained Disilane-Promoted Carboxylation of Organic Halides with CO2 under Transition-Metal-Free Conditions. Org Lett 2015; 17:5276-9. [DOI: 10.1021/acs.orglett.5b02645] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tsuyoshi Mita
- Faculty
of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
| | - Kenta Suga
- Faculty
of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
| | - Kaori Sato
- Faculty
of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
| | - Yoshihiro Sato
- Faculty
of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
- ACT-C, Japan Science
and Technology Agency (JST), Sapporo 060-0812, Japan
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8
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Mao J, Bao W. Palladium-catalyzed [2+1+1] annulation of norbornenes with (z)-bromostyrenes: synthesis of bismethylenecyclobutanes via twofold C(sp2)–H bond activation. Chem Commun (Camb) 2014; 50:15726-9. [DOI: 10.1039/c4cc06545j] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A Pd(0)-catalyzed domino bismethylenecyclobutanation reaction was established. The [2+1+1] cycloaddition involves twofold C(sp2)–H bond activation and formation of three carbon–carbon bonds.
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Affiliation(s)
- Jiangang Mao
- Department of Chemistry
- Zhejiang University (Xixi Campus)
- Hangzhou 310028, People's Republic of China
- School of Metallurgy and Chemical Engineering
- Jiangxi University of Science and Technology
| | - Weiliang Bao
- Department of Chemistry
- Zhejiang University (Xixi Campus)
- Hangzhou 310028, People's Republic of China
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10
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Mita T, Higuchi Y, Sato Y. Practical Synthesis of N-Boc- and N-Cbz-α-Amido Stannanes from α-Amido Sulfones Using TMSSnBu3 and CsF. Org Lett 2011; 13:2354-7. [DOI: 10.1021/ol200599d] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tsuyoshi Mita
- Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
| | - Yuki Higuchi
- Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
| | - Yoshihiro Sato
- Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
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11
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Carr JM, Snowden TS. Comparative reductive desymmetrization of 2,2-disubstituted-cycloalkane-1,3-diones. Tetrahedron 2008. [DOI: 10.1016/j.tet.2008.01.065] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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12
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Rhodium-catalyzed arylative cyclization of alkynones induced by addition of arylboronic acids. Tetrahedron 2007. [DOI: 10.1016/j.tet.2007.03.025] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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13
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Kuninobu Y, Kawata A, Takai K. Efficient Catalytic Insertion of Acetylenes into a Carbon−Carbon Single Bond of Nonstrained Cyclic Compounds under Mild Conditions. J Am Chem Soc 2006; 128:11368-9. [PMID: 16939256 DOI: 10.1021/ja064022i] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A rhenium complex, [ReBr(CO)3(thf)]2, catalyzes the reaction of a 1,3-dicarbonyl cyclic compound with an acetylene to give a medium-sized cyclic compound in excellent yield. By using isocyanide as an additive, the catalytic activity of the rhenium complex changes dramatically, and the insertion of acetylenes into a carbon-carbon single bond occurs under mild conditions. A plausible mechanism is that the reaction proceeds via the formation of a rhenacyclopentene intermediate, ring opening by a retro-aldol reaction, isomerization, and reductive elimination.
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Affiliation(s)
- Yoichiro Kuninobu
- Division of Chemistry and Biochemistry, Graduate School of Natural Science and Technology, Okayama University, Tsushima, Okayama 700-8530, Japan.
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14
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Miura T, Shimada M, Murakami M. Acyl 1,3-Migration in Rhodium-Catalyzed Reactions of Acetylenic β-Ketoesters with Aryl Boronic Acids: Application to Two-Carbon-Atom Ring Expansions. Angew Chem Int Ed Engl 2005; 44:7598-600. [PMID: 16259032 DOI: 10.1002/anie.200502650] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Tomoya Miura
- Department of Synthetic Chemistry and Biological Chemistry, Kyoto University, Katsura, Kyoto 615-8510, Japan
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Miura T, Shimada M, Murakami M. Acyl 1,3-Migration in Rhodium-Catalyzed Reactions of Acetylenic β-Ketoesters with Aryl Boronic Acids: Application to Two-Carbon-Atom Ring Expansions. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200502650] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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16
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Mori M. [Development of new synthetic method using organometallic complexes and an application toward natural product synthesis]. YAKUGAKU ZASSHI 2005; 125:51-72. [PMID: 15635281 DOI: 10.1248/yakushi.125.51] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Recently, many organometallic complexes, such as palladium, nickel, ruthenium, titanium complexes and others, were used for synthetic organic chemistry. We have developed many novel synthetic methods using these organometallic complexes for synthetic organic chemistry. As the organometallic complexes, nickel, chromium, molybdenum, ruthenium, zirconium, titanium, and palladium complexes, were used. Furthermore, bimetallic complexes having silicon-tin and silicon-zirconium bonds were investigated. On the other hand, utilization of gases in synthetic organic chemistry has been also developed. 1 atm pressure of gases such as CO, CO(2), N(2), ethylene and acetylene, could be used and the reaction procedure is very simple, that a balloon filled with a gas is connected on the top of the flask. Using our novel synthetic methods, we have synthesized many natural products and biologically active substances, such as cephalotaxin, mesembrine, tubifoline, strychnine, stemoamide, lycopodine, pumiliotoxin C, beta-lactam, carbapenam and benzodiazepinone derivatives.
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Affiliation(s)
- Miwako Mori
- Department of Fine Synthetic Chemistry, Graduate School of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan.
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Isolation and Characterization of Silyl Enol Ether Intermediates in the Synthesis of 5,6,9,10–Tetrahydro-7,8-benzocyclooctenedione. Molecules 2002. [PMCID: PMC6146440 DOI: 10.3390/71100801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The 5,6,9,10-tetrahydro-7,8-benzocyclooctenedione 4 has been synthesized through fragmentation of a bicyclo[4.2.0]octane system using an acyloin reaction on the trans-2,3-dicarboethoxy-1,2,3,4-tetrahydronaphthalene 1 in the presence of trimethyl-chlorosilane (TMCS). The two intermediates of this reaction, bis(trimethylsiloxy) derivatives 2 and 3, have been isolated and characterized.
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Eichberg MJ, Dorta RL, Grotjahn DB, Lamottke K, Schmidt M, Vollhardt KP. Approaches to the synthesis of (+/-)-strychnine via the cobalt-mediated [2 + 2 + 2] cycloaddition: rapid assembly of a classic framework. J Am Chem Soc 2001; 123:9324-37. [PMID: 11562215 DOI: 10.1021/ja016333t] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Five synthetic approaches to racemic strychnine (1), with the cobalt-mediated [2 + 2 + 2] cycloaddition of alkynes to indoles as the key step, are described. These include the generation and attempted cyclization of macrocycle 8 and the synthesis of dihydrocarbazoles 15, 22, and 26 and their elaboration to pentacyclic structures via a conjugate addition, dipolar cycloaddition, and propellane-to-spirofused skeletal rearrangement, respectively. Finally, the successful total synthesis of 1 is discussed. The development of a short, highly convergent route (14 steps in the longest linear sequence) is highlighted by the cyclization of enynoylindole 40 with acetylene and the formal intramolecular 1,8-conjugate addition of amine 49 to form pentacycle 50. Numerous attempts toward the formation of the piperidine ring of 1 from vinyl iodide 56 were made and its successful formation via palladium-, nickel-, and radical-mediated processes is described.
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Affiliation(s)
- M J Eichberg
- Center for New Directions in Organic Synthesis, Department of Chemistry, University of California at Berkeley, 94720-1460, USA
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