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King CR, Holdaway A, Durrant G, Wheeler J, Suaava L, Konnick MM, Periana RA, Ess DH. Supermetal: SbF 5-mediated methane oxidation occurs by C-H activation and isobutane oxidation occurs by hydride transfer. Dalton Trans 2019; 48:17029-17036. [PMID: 31693026 DOI: 10.1039/c9dt03564h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
SbVF5 is generally assumed to oxidize methane through a methanium-to-methyl cation mechanism. However, experimentally no H2 is observed, and the mechanism of methane oxidation has remained unsolved for several decades. To solve this problem, density functional theory calculations with multiple chemical models (mononuclear and dinuclear) were used to examine methane oxidation by SbVF5 in the presence of CO leading to the methyl acylium cation ([CH3CO]+). While there is a low barrier for methane protonation by [SbVF6]-[H]+ (the combination of SbVF5 and HF) to give the [SbVF5]-[CH5]+ ion pair, H2 dissociation is a relatively high energy process, even with CO assistance, and so this protonation pathway is reversible. While Sb-mediated hydride transfer has a reasonable barrier, the C-H activation/σ-bond metathesis mechanism with the formation of an SbV-Me intermediate is lower in energy. This pathway leads to the acylium cation by functionalization of the SbV-Me intermediate with CO and is consistent with no observation of H2. Because this C-H activation/metal-alkyl functionalization pathway is higher in energy than methane protonation, it is also consistent with the experimentally observed methane hydrogen-to-deuterium exchange. This is the first time that evidence is presented demonstrating that SbVF5 acts beyond a Bronsted superacid and involves C-H activation with an organometallic intermediate. In contrast to methane, due to the much lower carbocation hydride affinity, isobutane significantly favors hydride transfer to give the tert-butyl carbocation with concomitant SbV to SbIII reduction. In this mechanism, the resulting highly acidic SbV-H intermediate provides a route to H2 through protonation of isobutane, which is consistent with experiments and resolves the longstanding enigma of different experimental results for methane versus isobutane.
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Affiliation(s)
- Clinton R King
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, USA.
| | - Ashley Holdaway
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, USA.
| | - George Durrant
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, USA.
| | - Josh Wheeler
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, USA.
| | - Lorna Suaava
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, USA.
| | | | - Roy A Periana
- Department of Chemistry, The Scripps Research Institute, Jupiter, Florida 33458, USA.
| | - Daniel H Ess
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, USA.
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Srivastava AK. Ab initio investigations on non-metallic chain-shaped F H+1+ series of superalkali cations. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.02.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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3
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Theunissen C, Métayer B, Lecomte M, Henry N, Chan HC, Compain G, Gérard P, Bachmann C, Mokhtari N, Marrot J, Martin-Mingot A, Thibaudeau S, Evano G. Cationic polycyclization of ynamides: building up molecular complexity. Org Biomol Chem 2018; 15:4399-4416. [PMID: 28485455 DOI: 10.1039/c7ob00850c] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Polycyclization reactions are among the most efficient synthetic tools for the synthesis of complex, polycyclic molecules in a single operation from simple starting materials. We report in this manuscript a full account on the discovery and development of a novel cationic polycyclization from readily available ynamides. Simple activation of these building blocks under acidic conditions enables the generation of highly reactive activated keteniminium ions, which triggers an unprecedented cationic polycyclization yielding highly substituted polycyclic nitrogen heterocycles possessing up to seven fused cycles and three contiguous stereocenters.
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Affiliation(s)
- Cédric Theunissen
- Laboratoire de Chimie Organique, Service de Chimie et PhysicoChimie Organiques, Université libre de Bruxelles (ULB), Avenue F. D. Roosevelt 50, CP160/06, 1050 Brussels, Belgium.
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Hassanali AA, Cuny J, Verdolino V, Parrinello M. Aqueous solutions: state of the art in ab initio molecular dynamics. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2014; 372:20120482. [PMID: 24516179 DOI: 10.1098/rsta.2012.0482] [Citation(s) in RCA: 98] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The simulation of liquids by ab initio molecular dynamics (AIMD) has been a subject of intense activity over the last two decades. The significant increase in computational resources as well as the development of new and efficient algorithms has elevated this method to the status of a standard quantum mechanical tool that is used by both experimentalists and theoreticians. As AIMD computes the electronic structure from first principles, it is free of ad hoc parametrizations and has thus been applied to a large variety of physical and chemical problems. In particular, AIMD has provided microscopic insight into the structural and dynamical properties of aqueous solutions which are often challenging to probe experimentally. In this review, after a brief theoretical description of the Born-Oppenheimer and Car-Parrinello molecular dynamics formalisms, we show how AIMD has enhanced our understanding of the properties of liquid water and its constituent ions: the proton and the hydroxide ion. Thereafter, a broad overview of the application of AIMD to other aqueous systems, such as solvated organic molecules and inorganic ions, is presented. We also briefly describe the latest theoretical developments made in AIMD, such as methods for enhanced sampling and the inclusion of nuclear quantum effects.
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Affiliation(s)
- Ali A Hassanali
- Department of Chemistry and Applied Biosciences, ETH Zurich and Università della Svizzera Italiana, , via G. Buffi 13, 6900 Lugano, Switzerland
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Galib M, Hanna G. Mechanistic Insights into the Dissociation and Decomposition of Carbonic Acid in Water via the Hydroxide Route: An Ab Initio Metadynamics Study. J Phys Chem B 2011; 115:15024-35. [DOI: 10.1021/jp207752m] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mirza Galib
- Department of Chemistry, University of Alberta, Alberta, Canada
| | - Gabriel Hanna
- Department of Chemistry, University of Alberta, Alberta, Canada
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6
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McGrath MJ, Kuo IFW, Siepmann JI. Liquid structures of water, methanol, and hydrogen fluoride at ambient conditions from first principles molecular dynamics simulations with a dispersion corrected density functional. Phys Chem Chem Phys 2011; 13:19943-50. [DOI: 10.1039/c1cp21890e] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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7
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Costa Cabral BJ, Coutinho K, Canuto S. Electronic properties of liquid hydrogen fluoride: A sequential quantum mechanical/Born–Oppenheimer molecular dynamics approach. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.06.040] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Sophy KB, Kuo JL. Structure and vibrational spectra of H+(HF)n (n=2–9) clusters: An ab initio study. J Chem Phys 2009; 131:224307. [DOI: 10.1063/1.3268502] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
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Ayotte P, Plessis S, Marchand P. Trapping proton transfer intermediates in the disordered hydrogen-bonded network of cryogenic hydrofluoric acid solutions. Phys Chem Chem Phys 2008; 10:4785-92. [DOI: 10.1039/b806654j] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Simon C, Ciccotti G, Klein ML. Computing the Acidity of Liquids via Ab Initio Molecular Dynamics. Chemphyschem 2007; 8:2072-6. [PMID: 17722221 DOI: 10.1002/cphc.200700250] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Christian Simon
- Université P. et M. Curie-Paris 6, Laboratoire LI2C-UMR CNRS 7612, case courrier 51, 4 Place Jussieu, 75252 Pariscedex05, France.
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Xiang J, He J, Yin Y, Li D. Anionic hydrogen-bonded chains , coexisting with Ni(II) complexes of polyamine-based ligands. INORG CHEM COMMUN 2006. [DOI: 10.1016/j.inoche.2005.12.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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12
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Brancato G, Tuckerman ME. A polarizable multistate empirical valence bond model for proton transport in aqueous solution. J Chem Phys 2005; 122:224507. [PMID: 15974691 DOI: 10.1063/1.1902924] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A multistate empirical valence bond model for proton transport in water, which explicitly includes solvent polarization, is presented. Polarization is included for each valence-bond state via induced point dipoles, and the model is parametrized to be used with an effective path integral derived potential surface, so as to include quantum effects of the transferring proton. The new model is shown to reproduce ab initio geometries and energetics for small protonated clusters. It is also shown that the new model gives a diffusion constant for the excess proton in water, which is in good agreement with experiment, and that the qualitative features of ab initio path integral simulations [D. Marx, M. E. Tuckerman, J. Hutter, and M. Parrinello, Nature (London) 397, 601 (1999)] are well reproduced.
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Affiliation(s)
- Giuseppe Brancato
- Department of Chemistry, New York University, New York, New York 10003, USA
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Zhuang W, Dellago C. Dissociation of Hydrogen Chloride and Proton Transfer in Liquid Glycerol: An Ab Initio Molecular Dynamics Study. J Phys Chem B 2004. [DOI: 10.1021/jp047676r] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Wei Zhuang
- Department of Chemistry, University of California at Irvine, Irvine, California 92697, and Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
| | - Christoph Dellago
- Department of Chemistry, University of California at Irvine, Irvine, California 92697, and Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
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Abstract
We have employed ab initio path integral molecular dynamics simulations to investigate the role of nuclear quantum effects on the strength of hydrogen bonds in liquid hydrogen fluoride. Nuclear quantum effects are shown to be responsible for a stronger hydrogen bond and an enhanced dipole-dipole interaction, which lead, in turn, to a shortening of the H...F intrachain distance. The simulation results are analyzed in terms of the electronic density shifts with respect to a purely classical treatment of the nuclei. The observed enhanced hydrogen-bond interaction, which arises from a coupling of intra- and intermolecular effects, should be a general phenomenon occurring in all hydrogen-bonded systems.
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Affiliation(s)
- Simone Raugei
- International School for Advanced Studies, via Beirut 4, 34014 Trieste, Italy
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Minary P, Martyna GJ, Tuckerman ME. Algorithms and novel applications based on the isokinetic ensemble. II. Ab initio molecular dynamics. J Chem Phys 2003. [DOI: 10.1063/1.1534583] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16
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Raugei S, Klein ML. Hydrocarbon Reactivity in the Superacid SbF5/HF: an ab Initio Molecular Dynamics Study. J Phys Chem B 2002. [DOI: 10.1021/jp026395l] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Simone Raugei
- International School for Advanced Studies (SISSA/ISAS), via Beirut 4, 34014 Trieste, Italy, and Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Michael L. Klein
- International School for Advanced Studies (SISSA/ISAS), via Beirut 4, 34014 Trieste, Italy, and Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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17
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Morrone JA, Tuckerman ME. Ab initio molecular dynamics study of proton mobility in liquid methanol. J Chem Phys 2002. [DOI: 10.1063/1.1496457] [Citation(s) in RCA: 124] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
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Abstract
Recent applications of density functional theory base ab initio molecular dynamics in chemical relevant systems are reviewed. The emphasis is on the dynamical aspect in the study of structures, reaction mechanisms, and electronic properties in both the molecular and condensed phases. Examples were chosen from fluxional molecules, solution reactions, and biological systems to illustrate the broad potential applications and unique information that can be obtained from ab initio molecular dynamics calculations. Recent advances in the development of efficient numerical algorithms for the prediction of spectroscopic properties are highlighted.
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Affiliation(s)
- John S Tse
- Steacie Institute for Molecular Sciences, National Research Council of Canada, Ottawa, Ontario, K1A 0R6.
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Raugei S, Klein ML. Ab Initio Molecular Dynamics Investigation of the Formyl Cation in the Superacid SbF5/HF. J Phys Chem B 2001. [DOI: 10.1021/jp0106855] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Simone Raugei
- Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Michael L. Klein
- Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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20
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Kim D, Klein ML. Ab Initio Molecular Dynamics Study of the Superacid System SbF5/HF Solution. J Phys Chem B 2000. [DOI: 10.1021/jp002619t] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Dongsup Kim
- Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Michael L. Klein
- Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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