1
|
Kim J, Kang DH, Cheng M, Kim SK. Dynamic Interplay between the Mode-Randomization and Autodetachment of the Dipole-Bound States of the Anion. J Phys Chem Lett 2024; 15:8562-8568. [PMID: 39140675 DOI: 10.1021/acs.jpclett.4c01991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/15/2024]
Abstract
State-specific dynamics of the dipole-bound state (DBS) of the cryogenically cooled deprotonated 4,4'-biphenol anion have been investigated by picosecond time-resolved pump-probe spectroscopy. For DBS vibrational states below the electron-detachment threshold, the relaxation rate is slow to give a lifetime (τ) longer than ∼5 ns, and it is attributed to the nonvalence-to-valence orbital transformation. For the DBS resonances above the detachment threshold, however, the lifetime decreases with the activation of autodetachment, whereas the otherwise zeroth DBS modes seem to be randomized by intramolecular vibrational energy redistribution (IVR), as manifested in the biexponential transients. As the DBS internal energy increases further, the lifetime shows a monotonic decrease to give τ ∼ 50 ps at E'vib ∼ 1700 cm-1. This study demonstrates that IVR may play an important role in the autodetachment dynamics when the density of states rapidly increases with increasing vibrational energy, giving important implications for the electron-transfer dynamics taking place in large biological or astrochemical systems.
Collapse
Affiliation(s)
- Jinwoo Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Min Cheng
- Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| |
Collapse
|
2
|
Clarke CJ, Burrow EM, Verlet JRR. The valence electron affinity of uracil determined by anion cluster photoelectron spectroscopy. Phys Chem Chem Phys 2024; 26:20037-20045. [PMID: 39007196 DOI: 10.1039/d4cp02146k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
The unoccupied π* orbitals of the nucleobases are considered to play important roles in low-energy electron attachment to DNA, inducing damage. While the lowest anionic valence state is vertically unbound in all neutral nucleobases, it remains unclear even for the simplest nucleobase, uracil (U), whether its valence anion (U-) is adiabatically bound, which has important implications on the efficacy of damage processes. Using anion photoelectron spectroscopy, we demonstrate that the valence electron affinity (EAV) of U can be accurately measured within weakly solvating clusters, U-(Ar)n and U-(N2)n. Through extrapolation to the isolated U limit, we show that EAV = -2 ± 18 meV. We discuss these findings in the context of electron attachment to U and its reorganization energy, and more generally establish guidance for the determination of molecular electron affinities from the photoelectron spectroscopy of anion clusters.
Collapse
Affiliation(s)
- Connor J Clarke
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - E Michi Burrow
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
| |
Collapse
|
3
|
Clarke CJ, Verlet JRR. Dynamics of Anions: From Bound to Unbound States and Everything In Between. Annu Rev Phys Chem 2024; 75:89-110. [PMID: 38277700 DOI: 10.1146/annurev-physchem-090722-125031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2024]
Abstract
Gas-phase anions present an ideal playground for the exploration of excited-state dynamics. They offer control in terms of the mass, extent of solvation, internal temperature, and conformation. The application of a range of ion sources has opened the field to a vast array of anionic systems whose dynamics are important in areas ranging from biology to star formation. Here, we review recent experimental developments in the field of anion photodynamics, demonstrating the detailed insight into photodynamical and electron-capture processes that can be uncovered. We consider the electronic and nuclear ultrafast dynamics of electronically bound excited states along entire reaction coordinates; electronically unbound states showing that photochemical concepts, such as chromophores and Kasha's rule, are transferable to electron-driven chemistry; and nonvalence states that straddle the interface between bound and unbound states. Finally, we consider likely developments that are sure to keep the field of anion dynamics buoyant and impactful.
Collapse
Affiliation(s)
- Connor J Clarke
- Department of Chemistry, Durham University, Durham, United Kingdom;
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham, United Kingdom;
| |
Collapse
|
4
|
Sedmidubská B, Kočišek J. Interaction of low-energy electrons with radiosensitizers. Phys Chem Chem Phys 2024; 26:9112-9136. [PMID: 38376461 DOI: 10.1039/d3cp06003a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
We provide an experimentalist's perspective on the present state-of-the-art in the studies of low-energy electron interactions with common radiosensitizers, including compounds used in combined chemo-radiation therapy and their model systems. Low-energy electrons are important secondary species formed during the interaction of ionizing radiation with matter. Their role in the radiation chemistry of living organisms has become an important topic for more than 20 years. With the increasing number of works and reviews in the field, we would like to focus here on a very narrow area of compounds that have been shown to have radio-sensitizing properties on the one hand, and high reactivity towards low-energy electrons on the other hand. Gas phase experiments studying electron attachment to isolated molecules and environmental effects on reaction dynamics are reviewed for modified DNA components, nitroimidazoles, and organometallics. In the end, we provide a perspective on the future directions that may be important for transferring the fundamental knowledge about the processes induced by low-energy electrons into practice in the field of rational design of agents for concomitant chemo-radiation therapy.
Collapse
Affiliation(s)
- Barbora Sedmidubská
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, 182223 Prague, Czech Republic.
- Department of Nuclear Chemistry, Faculty of Nuclear Sciences and Physical Engineering, Břehová 7, 11519 Prague, Czech Republic
- Institut de Chimie Physique, UMR 8000 CNRS and Faculté des sciences d'Orsay, Université Paris Saclay, F-91405 Orsay Cedex, France
| | - Jaroslav Kočišek
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, 182223 Prague, Czech Republic.
| |
Collapse
|
5
|
Kang DH, Cho KH, Kim J, Eun HJ, Rhee YM, Kim SK. Electron-Binding Dynamics of the Dipole-Bound State: Correlation Effect on the Autodetachment Dynamics. J Am Chem Soc 2023; 145:25824-25833. [PMID: 37972034 DOI: 10.1021/jacs.3c10099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
Abstract
The nature of the electron-binding forces in the dipole-bound states (DBS) of anions is interrogated through experimental and theoretical means by investigating the autodetachment dynamics from DBS Feshbach resonances of ortho-, meta-, and para-bromophenoxide (BrPhO-). Though the charge-dipole electrostatic potential has been widely regarded to be mainly responsible for the electron binding in DBS, the effect of nonclassical electron correlation has been conceived to be quite significant in terms of its static and/or dynamic contributions toward the binding of the excess electron to the neutral core. State-specific real-time autodetachment dynamics observed by picosecond time-resolved photoelectron velocity-map imaging spectroscopy reveal that the autodetachment processes from the DBS Feshbach resonances of BrPhO- anions cannot indeed be rationalized by the conventional charge-dipole potential. Specifically, the autodetachment lifetime is drastically lengthened depending on differently positioned Br-substitution, and this rate change cannot be explained within the framework of Fermi's golden rule based on the charge-dipole assumption. High-level ab initio quantum chemical calculations with EOM-EA-CCSD, which intrinsically takes into account electron correlations, generate more reasonable predictions on the binding energies than density functional theory (DFT) calculations, and semiclassical quantum dynamics simulations based on the EOM-EA-CCSD data excellently predict the trend in the autodetachment rates. These findings illustrate that static and dynamic properties of the excess electron in the DBS are strongly influenced by correlation interactions among electrons in the nonvalence orbital of the dipole-bound electron and highly polarizable valence orbitals of the bromine atom, which, in turn, dictate the interesting chemical fate of exotic anion species.
Collapse
Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Kwang Hyun Cho
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Jinwoo Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Han Jun Eun
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Young Min Rhee
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| |
Collapse
|
6
|
An S, Kim D, Kim J, Kim SK. Excited-state chemistry of the nitromethane anion mediated by the dipole-bound states revealed by photofragment action spectroscopy. Chem Sci 2023; 14:12231-12237. [PMID: 37969601 PMCID: PMC10631229 DOI: 10.1039/d3sc04342h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 10/12/2023] [Indexed: 11/17/2023] Open
Abstract
We report the first experimental observation of the excited dipole-bound state (DBS) of the cryogenically cooled nitromethane anion (CH3NO2-), where the excess electron is loosely attached to the singlet or triplet neutral-core. Photofragment and photodetachment action spectra have been employed for the dynamic exploration of Feshbach resonances located even far above the electron detachment threshold, giving excitation profiles from the ground anionic state (D0) to the DBSs which match quite well with the spectral structures of the photoelectron spectra. This indicates that the electron transfer from the nonvalence orbital (of DBS) to the valence orbital (of anion) is mainly responsible for the anionic fragmentation channels, giving strong evidence for that the DBS plays a dynamic doorway-role in the anionic fragmentation reactions. Photofragment action spectra have also been obtained for the anionic clusters of (CH3NO2)2-, (CH3NO2)3-, or (CH3NO2·H2O)-, giving the relative yields of various fragments as a function of the excitation energy for each cluster. The absorption profiles of the anionic clusters exhibit substantial blue-shifts compared to the bare nitromethane anion as their ground states are much stabilized by solvation. The anionic fragmentation pattern varies among different clusters, giving essential clues for the thorough understanding of the whole anionic dynamics such as the dynamic role of the short-lived nonvalence-bound states of the clusters.
Collapse
Affiliation(s)
- Sejun An
- Department of Chemistry, KAIST Daejeon 34141 Republic of Korea
| | - Dabin Kim
- Department of Chemistry, KAIST Daejeon 34141 Republic of Korea
| | - Junggil Kim
- Department of Chemistry, KAIST Daejeon 34141 Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST Daejeon 34141 Republic of Korea
| |
Collapse
|
7
|
Abstract
This Perspective attempts to shed light on developments in the theoretical and experimental study of molecular anions highlighting more recent workers in the field. The species I discuss include (i) valence-bound (singly and multiply charged) anions including atmospheric, catalytic, superhalogen, interfacial, and more; (ii) dipole- and correlation-bound anions including their role as doorways to other states and their appearance "in space", and (iii) metastable anions focusing on tools needed for their theoretical treatment. I also briefly discuss angular distributions of photodetached electrons and their growing utilization in experiments and theory. A recurring theme is the dependence of electron binding energies (EBEs) on the surrounding environment. Some anions that are nonexistent as isolated species evolve to be stable but with small EBEs when weakly solvated (e.g., as in a cluster or at an air-solvent interface). Others existing in isolation only as metastable species become stable when the underlying molecular framework contains one or more positively charged group (e.g., protonated side chains in a peptide) that generates a stabilizing Coulomb potential. On the other hand, a destabilizing Coulomb potential between/among negative sites in a multiply charged anion decreases the EBEs of each such site and generates a repulsive Coulomb barrier that can affect stability.
Collapse
Affiliation(s)
- Jack Simons
- Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| |
Collapse
|
8
|
Narayanan S J J, Tripathi D, Verma P, Adhikary A, Dutta AK. Secondary Electron Attachment-Induced Radiation Damage to Genetic Materials. ACS OMEGA 2023; 8:10669-10689. [PMID: 37008102 PMCID: PMC10061531 DOI: 10.1021/acsomega.2c06776] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2022] [Accepted: 02/20/2023] [Indexed: 06/19/2023]
Abstract
Reactions of radiation-produced secondary electrons (SEs) with biomacromolecules (e.g., DNA) are considered one of the primary causes of radiation-induced cell death. In this Review, we summarize the latest developments in the modeling of SE attachment-induced radiation damage. The initial attachment of electrons to genetic materials has traditionally been attributed to the temporary bound or resonance states. Recent studies have, however, indicated an alternative possibility with two steps. First, the dipole-bound states act as a doorway for electron capture. Subsequently, the electron gets transferred to the valence-bound state, in which the electron is localized on the nucleobase. The transfer from the dipole-bound to valence-bound state happens through a mixing of electronic and nuclear degrees of freedom. In the presence of aqueous media, the water-bound states act as the doorway state, which is similar to that of the presolvated electron. Electron transfer from the initial doorway state to the nucleobase-bound state in the presence of bulk aqueous media happens on an ultrafast time scale, and it can account for the decrease in DNA strand breaks in aqueous environments. Analyses of the theoretically obtained results along with experimental data have also been discussed.
Collapse
Affiliation(s)
- Jishnu Narayanan S J
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
| | - Divya Tripathi
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
| | - Pooja Verma
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
| | - Amitava Adhikary
- Department
of Chemistry, Oakland University, 146 Library Drive, Rochester, Michigan 48309, United States
| | - Achintya Kumar Dutta
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
| |
Collapse
|
9
|
Narayanan S J J, Bachhar A, Tripathi D, Dutta AK. Electron Attachment to Wobble Base Pairs. J Phys Chem A 2023; 127:457-467. [PMID: 36622294 DOI: 10.1021/acs.jpca.2c07469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
We have analyzed the low-energy electron attachment to wobble base pairs using the equation of motion coupled cluster method and extended basis sets. A doorway mechanism exists for the attachment of the additional electron to the base pairs, where the initially formed dipole-bound anion captures the incoming electron. The doorway dipole-bound anionic state subsequently leads to the formation of a valence-bound state, and the transfer of extra electron occurs by mixing of electronic and nuclear degrees of freedom. The formation of the valence-bound anion is associated with proton transfer in hypoxanthine-cytosine and hypoxanthine-adenine base pairs, which happens through a concerted electron-proton transfer process. The calculated rate constant for the dipole-bound to valence-bound transition in wobble base pairs is slower than that observed in the Watson-Crick guanine-cytosine base pair.
Collapse
Affiliation(s)
- Jishnu Narayanan S J
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai400076, India
| | - Arnab Bachhar
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai400076, India
| | - Divya Tripathi
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai400076, India
| | - Achintya Kumar Dutta
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai400076, India
| |
Collapse
|
10
|
Workman KT, Firth RA, Gichuhi WK. From Benzonitrile to Dicyanobenzenes: The Effect of an Additional CN Group on the Thermochemistry and Negative Ion Photoelectron Spectra of Dicyanobenzene Radical Anions. J Phys Chem A 2023; 127:181-194. [PMID: 36592400 DOI: 10.1021/acs.jpca.2c07655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The negative ion photoelectron spectra of 1,2-dicyanobenzene (o-DCNB), 1,3-dicyanobenzene (m-DCNB), and 1,4-dicyanobenzene (p-DCNB) radical anions (DCNB·-), acquired through the computation of Frack-Condon (FC) factors, are presented. The FC calculations utilize harmonic frequencies and normal mode vectors derived from density functional theory at the B3LYP/aug-cc-pVQZ basis set. All the totally symmetric vibrational modes are treated with Duschinsky rotations to yield neutral DCNBs in their singlet (So) and lowest triplet (T1) states, following an electron removal from the doublet anionic ground state. For the So state, the adiabatic electron affinities (EAs) for o-, m-, and p-DCNB are 1.179, 1.103, and 1.348 eV. The EAs for the lowest T1 state in o-, m-, and p-DCNB are 4.151, 4.185, and 4.208 eV, resulting in an So-T1 energy difference (ΔEST) of 2.973, 3.082, and 2.860 eV. A vibrational analysis reveals evidence of FC activity involving ring distortion, C-N bending, and ring C═C stretching vibrational progressions in both the So and T1 states. With the detection of cyanonaphthalene (C10H7CN) and cyanoindene (C9H7CN) in the interstellar medium (ISM), our results highlight the extent to which replacing a single hydrogen on an aromatic molecule with a cyano group, C≡N, can alter the vibrational structure of the molecule/radical anion. As such, dicyano-polyaromatic hydrocarbons may be reasonably robust in the ISM, making it appealing to search for them in future interstellar detection missions.
Collapse
Affiliation(s)
- Kie T Workman
- Department of Chemistry, Tennessee Tech University, 1 William L. Jones Dr., Cookeville, Tennessee38505, United States.,Department of Chemical Engineering, Tennessee Tech University, 1 William L. Jones Dr., Cookeville, Tennessee38505, United States
| | - Rebecca A Firth
- Department of Chemistry, Tennessee Tech University, 1 William L. Jones Dr., Cookeville, Tennessee38505, United States
| | - Wilson K Gichuhi
- Department of Chemistry, Tennessee Tech University, 1 William L. Jones Dr., Cookeville, Tennessee38505, United States
| |
Collapse
|
11
|
Kang DH, Kim J, Eun HJ, Kim SK. State-Specific Chemical Dynamics of the Nonvalence Bound State of the Molecular Anions. Acc Chem Res 2022; 55:3032-3042. [PMID: 36206486 DOI: 10.1021/acs.accounts.2c00512] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Nonvalence bound states (NBS) are anionic states where the excess electron is extremely loosely bound to the neutral core through long-range potentials. In contrast to the valence orbitals of which the electron occupancy determines the molecular structure, as well as the chemical reactivity, the nonvalence orbital is quite diffuse and located far from the neutral core. The NBS can be classified into the dipole-bound state (DBS), quadruple-bound state (QBS), or correlation-bound state (CBS) according to the nature of the electron-neutral interaction, although their interaction potentials may cooperatively contribute. The NBS is ubiquitous in nature and has the strong implications in atmospheric, interstellar, or biological chemistry. Accordingly, NBS has long been conceived to play the role of the doorway into the formation of a stable anion or dissociative electron attachment (DEA). Despite intensive and extensive studies, however, the quantum-mechanical nature of NBS is still far from being thorough understanding. Herein, we describe a new aspect of state-specific NBS-mediated chemical dynamics, which has been revealed through a series of recent studies by our group. We have employed picosecond time-resolved pump-probe spectroscopy combined with cryogenically cooled ion trap and velocity-map imaging techniques to study closed-shell anions generated by electrospray ionization. DBS vibrational Feshbach resonances are prepared by the optical excitation of phenoxide, for instance, and their individual lifetimes have been precisely measured in a state-specific manner to reveal the strong mode-dependency of the autodetachment rate. Fermi's golden rule turns out to be extremely useful for a rational explanation of the experiment, although the more sophisticated theoretical model is desirable for the more quantitative analysis. For the DBS of para-chlorophenoxide or para-bromophenoxide where the polarizability of neutral core is substantial, the Fermi's golden rule based on the charge-dipole potential needs to be significantly modified to include the correlation effects to explain the exceptionally slow autodetachment rates. For the QBS of 4-cyanophenoxide, the mode-specific behavior of the quadrupole ellipsoid tensor explains the strong mode-dependent autodetachment rate. Meanwhile, the nonadiabatic transition of the excess electron into the valence orbital can result in stable anion formation or immediate chemical bond rupture. In the DBS of ortho-, meta-, or para-iodophenoxide, the transformation of the loosely bound excess electron into the πσ* antibonding orbital occurs to give I- as a final fragment. The fragmentation mediated by DBS occurs competitively with the concomitant autodetachment, paving a new way of the reaction control by tuning the quantum-mechanical nature of the DBS Feshbach resonance. This experimental observation provides the foremost evidence for the dynamic role of the DBS as a doorway into anion chemistry, such as DEA. The ponderomotive force on the electron in the nonvalence orbital has been demonstrated for the first time in a strong optical field, giving great promise for the manipulation of polyatomic molecules in terms of the spatial location, as well as the AC-Stark control of the chemical reaction.
Collapse
Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Jinwoo Kim
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Han Jun Eun
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| |
Collapse
|