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Gong W, Wu T, Liu Y, Jiao S, Wang W, Yan W, Li Y, Liu Y, Zhang Y, Wang H. Insight into the photodynamic mechanism and protein binding of a nitrosyl iron-sulfur [Fe 2S 2(NO) 4] 2- cluster. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 320:124603. [PMID: 38878720 DOI: 10.1016/j.saa.2024.124603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2024] [Revised: 05/26/2024] [Accepted: 06/04/2024] [Indexed: 07/08/2024]
Abstract
Iron-sulfur cluster conversion and nitrosyl modification are involved in regulating their functions and play critical roles in signaling for biological systems. Hereby, the photo-induced dynamic process of (Me4N)2[Fe2S2(NO)4] was monitored using time-resolved electron paramagnetic resonance (EPR) spectra, MS spectra and cellular imaging methods. Photo-irradiation and the solvent affect the reaction rates and products. Spectroscopic and kinetic studies have shown that the process involves at least three intermediates: spin-trapped NO free radical species with a gav at 2.040, and two other iron nitrosyl species, dinitrosyl iron units (DNICs) and mononitrosyl iron units (MNICs) with gav values at 2.031 and 2.024, respectively. Moreover, the [Fe2S2(NO)4]2- cluster could bind with ferritin and decompose gradually, and a binding state of dinitrosyl iron coordinated with Cys102 of the recombinant human heavy chain ferritin (rHuHF) was finally formed. This study provides insight into the photodynamic mechanism of nitrosyl iron - sulfur clusters to improve the understanding of physiological activity.
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Affiliation(s)
- Wenjun Gong
- Key Laboratory of Chemical Biology and Molecular Engineering of Education Ministry and Key Laboratory of Energy Conversion and Storage Materials of Shanxi Provence, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Tao Wu
- Key Laboratory of Chemical Biology and Molecular Engineering of Education Ministry and Key Laboratory of Energy Conversion and Storage Materials of Shanxi Provence, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Yuhua Liu
- Key Laboratory of Chemical Biology and Molecular Engineering of Education Ministry and Key Laboratory of Energy Conversion and Storage Materials of Shanxi Provence, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Shuxiang Jiao
- Key Laboratory of Chemical Biology and Molecular Engineering of Education Ministry and Key Laboratory of Energy Conversion and Storage Materials of Shanxi Provence, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Wenming Wang
- Key Laboratory of Chemical Biology and Molecular Engineering of Education Ministry and Key Laboratory of Energy Conversion and Storage Materials of Shanxi Provence, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Wenjun Yan
- Institute of Coal Chemistry, Chinese Academy of Sciences,Taiyuan 030001, China
| | - Yanqiu Li
- Institute of Coal Chemistry, Chinese Academy of Sciences,Taiyuan 030001, China
| | - Yanhong Liu
- Techinical Institute of Physics & Chemistry, CAS, Beijing 100190, China
| | - Yun Zhang
- Department of Engineering Science, The University of Electro-Communications, 1-5-1 Chofugaoka, Chofu-shi, Tokyo 182-8585, Japan
| | - Hongfei Wang
- Key Laboratory of Chemical Biology and Molecular Engineering of Education Ministry and Key Laboratory of Energy Conversion and Storage Materials of Shanxi Provence, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China.
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Zhou S, Liu D, Fan K, Liu H, Zhang XD. Atomic-level design of biomimetic iron-sulfur clusters for biocatalysis. NANOSCALE 2024; 16:18644-18665. [PMID: 39257356 DOI: 10.1039/d4nr02883j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/12/2024]
Abstract
Designing biomimetic materials with high activity and customized biological functions by mimicking the central structure of biomolecules has become an important avenue for the development of medical materials. As an essential electron carrier, the iron-sulfur (Fe-S) clusters have the advantages of simple structure and high electron transport capacity. To rationally design and accurately construct functional materials, it is crucial to clarify the electronic structure and conformational relationships of Fe-S clusters. However, due to the complex catalytic mechanism and synthetic process in vitro, it is hard to reveal the structure-activity relationship of Fe-S clusters accurately. This review introduces the main structural types of Fe-S clusters and their catalytic mechanisms first. Then, several typical structural design strategies of biomimetic Fe-S clusters are systematically introduced. Furthermore, the development of Fe-S clusters in the biocatalytic field is enumerated, including tumor treatment, antibacterial, virus inhibition and plant photoprotection. Finally, the problems and development directions of Fe-S clusters are summarized. This review aims to guide people to accurately understand and regulate the electronic structure of Fe-S at the atomic level, which is of great significance for designing biomimetic materials with specific functions and expanding their applications in biocatalysis.
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Affiliation(s)
- Sufei Zhou
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Di Liu
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Kelong Fan
- Key Laboratory of Protein and Peptide Drugs, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China
| | - Haile Liu
- Key Laboratory of Water Security and Water Environment Protection in Plateau Intersection (NWNU), Ministry of Education; Key Lab of Bioelectrochemistry and Environmental Analysis of Gansu Province, College of Chemistry and Chemical Engineering, Northwest Normal University, Lanzhou 730070, China.
| | - Xiao-Dong Zhang
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
- Department of Physics and Tianjin Key Laboratory of Low Dimensional Materials Physics and Preparing Technology, School of Sciences, Tianjin University, Tianjin 300350, China
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Newman-Stonebraker SH, Gerard TJ, Holland PL. Opportunities for Insight into the Mechanism of Efficient CO 2/CO Interconversion at a Nickel-Iron Cluster in CO Dehydrogenase. Chem 2024; 10:1655-1667. [PMID: 38966253 PMCID: PMC11221784 DOI: 10.1016/j.chempr.2024.04.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/06/2024]
Abstract
The reduction of CO2 with low overpotential and high selectivity is a crucial challenge in catalysis. Fortunately, natural systems have evolved enzymes that achieve this catalytic reaction very efficiently at a complex nickel-iron-sulfur cluster within carbon monoxide dehydrogenase (CODH). Extensive biochemical, crystallographic, and spectroscopic work has been done to understand the structures and mechanism involved in the catalytic cycle, which are summarized here from the perspective of mechanistic organometallic chemistry. We highlight the ambiguities in the data and suggest experiments that could lead to clearer understanding of the mechanism and structures of intermediates at the active-site cluster. These include parallel crystallography and spectroscopy, as well as the preparation of synthetic analogues that help to interpret structural and spectroscopic signatures.
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Wilson DWN, Fataftah MS, Mathe Z, Mercado BQ, DeBeer S, Holland PL. Three-Coordinate Nickel and Metal-Metal Interactions in a Heterometallic Iron-Sulfur Cluster. J Am Chem Soc 2024; 146:4013-4025. [PMID: 38308743 PMCID: PMC10993082 DOI: 10.1021/jacs.3c12157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2024]
Abstract
Biological multielectron reactions often are performed by metalloenzymes with heterometallic sites, such as anaerobic carbon monoxide dehydrogenase (CODH), which has a nickel-iron-sulfide cubane with a possible three-coordinate nickel site. Here, we isolate the first synthetic iron-sulfur clusters having a nickel atom with only three donors, showing that this structural feature is feasible. These have a core with two tetrahedral irons, one octahedral tungsten, and a three-coordinate nickel connected by sulfide and thiolate bridges. Electron paramagnetic resonance (EPR), Mössbauer, and superconducting quantum interference device (SQUID) data are combined with density functional theory (DFT) computations to show how the electronic structure of the cluster arises from strong magnetic coupling between the Ni, Fe, and W sites. X-ray absorption spectroscopy, together with spectroscopically validated DFT analysis, suggests that the electronic structure can be described with a formal Ni1+ atom participating in a nonpolar Ni-W σ-bond. This metal-metal bond, which minimizes spin density at Ni1+, is conserved in two cluster oxidation states. Fe-W bonding is found in all clusters, in one case stabilizing a local non-Hund state at tungsten. Based on these results, we compare different M-M interactions and speculate that other heterometallic clusters, including metalloenzyme active sites, could likewise store redox equivalents and stabilize low-valent metal centers through metal-metal bonding.
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Affiliation(s)
- Daniel W. N. Wilson
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, Connecticut 06520, USA
| | - Majed S. Fataftah
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, Connecticut 06520, USA
| | - Zachary Mathe
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Brandon Q. Mercado
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, Connecticut 06520, USA
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Patrick L. Holland
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, Connecticut 06520, USA
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Shiau AA, Lee HB, Oyala PH, Agapie T. Coordination Number in High-Spin-Low-Spin Equilibrium in Cluster Models of the S 2 State of the Oxygen Evolving Complex. J Am Chem Soc 2023; 145:14592-14598. [PMID: 37366634 PMCID: PMC10575483 DOI: 10.1021/jacs.3c04464] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
Abstract
The S2 state of the Oxygen Evolving Complex (OEC) of Photosystem II (PSII) shows high-spin (HS) and low-spin (LS) EPR signals attributed to distinct structures based on computation. Five-coordinate MnIII centers are proposed in these species but are absent in available spectroscopic model complexes. Herein, we report the synthesis, crystal structure, electrochemistry, SQUID magnetometry, and EPR spectroscopy of a MnIIIMnIV3O4 cuboidal complex featuring five-coordinate MnIII. This cluster displays a spin ground state of S = 5/2, while conversion to a six-coordinate Mn upon treatment with water results in a spin state change to S = 1/2. These results demonstrate that coordination number, without dramatic changes within the Mn4O4 core, has a substantial effect on spectroscopy.
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Affiliation(s)
- Angela A Shiau
- Department of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E California Blvd MC 127-72, Pasadena, California 91125, United States
| | - Heui Beom Lee
- Department of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E California Blvd MC 127-72, Pasadena, California 91125, United States
| | - Paul H Oyala
- Department of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E California Blvd MC 127-72, Pasadena, California 91125, United States
| | - Theodor Agapie
- Department of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E California Blvd MC 127-72, Pasadena, California 91125, United States
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