1
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Yang CF, Udumulla T, Sha R, Canary JW. Control of Solid-Supported Intra- vs Interstrand Stille Coupling Reactions for Synthesis of DNA-Oligophenylene Conjugates. Bioconjug Chem 2024; 35:1166-1171. [PMID: 39046902 PMCID: PMC11342295 DOI: 10.1021/acs.bioconjchem.4c00310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Revised: 07/16/2024] [Accepted: 07/17/2024] [Indexed: 07/27/2024]
Abstract
Programmed DNA structures and assemblies are readily accessible, but site-specific functionalization is critical to realize applications in various fields such as nanoelectronics, nanomaterials and biomedicine. Besides pre- and post-DNA synthesis conjugation strategies, on-solid support reactions offer advantages in certain circumstances. We describe on-solid support internucleotide coupling reactions, often considered undesirable, and a workaround strategy to overcome them. Palladium coupling reactions enabled on-solid support intra- and interstrand coupling between single-stranded DNAs (ss-DNAs). Dilution with a capping agent suppressed interstrand coupling, maximizing intrastrand coupling. Alternatively, interstrand coupling actually proved advantageous to provide dimeric organic/DNA conjugates that could be conveniently separated from higher oligomers, and was more favorable with longer terphenyl coupling partners.
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Affiliation(s)
- Chu-Fan Yang
- Department of Chemistry, New
York University, New York, New York 10003, United States
| | - Thanuka Udumulla
- Department of Chemistry, New
York University, New York, New York 10003, United States
| | - Ruojie Sha
- Department of Chemistry, New
York University, New York, New York 10003, United States
| | - James W. Canary
- Department of Chemistry, New
York University, New York, New York 10003, United States
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2
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Eaves JD. Multielectron Dynamics in the Condensed Phase: Quantum Structure-Function Relationships. Annu Rev Phys Chem 2024; 75:437-456. [PMID: 38941526 DOI: 10.1146/annurev-physchem-042018-052515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/30/2024]
Abstract
Quantum information promises dramatic advances in computing last seen in the digital revolution, but quantum hardware is fragile, noisy, and resource intensive. Chemistry has a role in developing new materials for quantum information that are robust to noise, scalable, and operable in ambient conditions. While molecular structure is the foundation for understanding mechanism and reactivity, molecular structure/quantum function relationships remain mostly undiscovered. Using singlet fission as a specific example of a multielectron process capable of producing long-lived spin-entangled electronic states at high temperatures, I describe how to exploit molecular structure and symmetry to gain quantum function and how some principles learned from singlet fission apply more broadly to quantum science.
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Affiliation(s)
- Joel D Eaves
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA;
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3
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Gorman J, Hart SM, John T, Castellanos MA, Harris D, Parsons MF, Banal JL, Willard AP, Schlau-Cohen GS, Bathe M. Sculpting photoproducts with DNA origami. Chem 2024; 10:1553-1575. [PMID: 38827435 PMCID: PMC11138899 DOI: 10.1016/j.chempr.2024.03.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2024]
Abstract
Natural light-harvesting systems spatially organize densely packed dyes in different configurations to either transport excitons or convert them into charge photoproducts, with high efficiency. In contrast, artificial photosystems like organic solar cells and light-emitting diodes lack this fine structural control, limiting their efficiency. Thus, biomimetic multi-dye systems are needed to organize dyes with the sub-nanometer spatial control required to sculpt resulting photoproducts. Here, we synthesize 11 distinct perylene diimide (PDI) dimers integrated into DNA origami nanostructures and identify dimer architectures that offer discrete control over exciton transport versus charge separation. The large structural-space and site-tunability of origami uniquely provides controlled PDI dimer packing to form distinct excimer photoproducts, which are sensitive to interdye configurations. In the future, this platform enables large-scale programmed assembly of dyes mimicking natural systems to sculpt distinct photophysical products needed for a broad range of optoelectronic devices, including solar energy converters and quantum information processors.
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Affiliation(s)
- Jeffrey Gorman
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- These authors contributed equally
| | - Stephanie M. Hart
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- These authors contributed equally
| | - Torsten John
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Maria A. Castellanos
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Dvir Harris
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Molly F. Parsons
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - James L. Banal
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Adam P. Willard
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | | | - Mark Bathe
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- Lead contact
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4
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Wang Z, Xie X, Ma H. Simultaneous Intra- and Intermolecular Singlet Fission in Bipentacene Macrocycle Aggregates. J Phys Chem Lett 2024; 15:3523-3530. [PMID: 38522085 DOI: 10.1021/acs.jpclett.4c00300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2024]
Abstract
Singlet fission (SF) is a process where a singlet state splits into two triplet states, which is essential for enhancing optoelectronic devices. Macrocyclic structures allow for precise control of chromophore orientation and facilitate singlet fission in solutions. However, the behavior of these structures in thin films, crucial for solid-state device optimization, remains underexplored. This study examines the aggregation and singlet fission processes of bipentacene macrocycles (BPc) in thin films using molecular dynamics simulations and electronic structure calculations. Findings indicate that BPc aggregates more rapidly with less chloroform, aligning parallel to the substrate. Intramolecular singlet fission (iSF) rates are rarely changed during evaporation, but the efficiency of intermolecular singlet fission (xSF) improves due to the increase in packing domains, suggesting that orderly crystal domains are not necessary for device efficiency. This opens avenues for varied device designs and traditional solution-based methods for optimal device development.
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Affiliation(s)
- Zhangxia Wang
- School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, China
| | - Xiaoyu Xie
- Qingdao Institute for Theoretical and Computational Sciences, School of Chemistry and Chemical Engineering, Shandong University, Qingdao, Shandong 266237, China
| | - Haibo Ma
- Qingdao Institute for Theoretical and Computational Sciences, School of Chemistry and Chemical Engineering, Shandong University, Qingdao, Shandong 266237, China
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5
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Greißel PM, Thiel D, Gotfredsen H, Chen L, Krug M, Papadopoulos I, Miskolzie M, Torres T, Clark T, Brøndsted Nielsen M, Tykwinski RR, Guldi DM. Intramolecular Triplet Diffusion Facilitates Triplet Dissociation in a Pentacene Hexamer. Angew Chem Int Ed Engl 2024; 63:e202315064. [PMID: 38092707 DOI: 10.1002/anie.202315064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Indexed: 01/26/2024]
Abstract
Triplet dynamics in singlet fission depend strongly on the strength of the electronic coupling. Covalent systems in solution offer precise control over such couplings. Nonetheless, efficient free triplet generation remains elusive in most systems, as the intermediate triplet pair 1 (T1 T1 ) is prone to triplet-triplet annihilation due to its spatial confinement. In the solid state, entropically driven triplet diffusion assists in the spatial separation of triplets, resulting in higher yields of free triplets. Control over electronic coupling in the solid state is, however, challenging given its sensitivity to molecular packing. We have thus developed a hexameric system (HexPnc) to enable solid-state-like triplet diffusion at the molecular scale. This system is realized by covalently tethering three pentacene dimers to a central subphthalocyanine scaffold. Transient absorption spectroscopy, complemented by theoretical structural optimizations and steady-state spectroscopy, reveals that triplet diffusion is indeed facilitated due to intramolecular cluster formation. The yield of free triplets in HexPnc is increased by a factor of up to 14 compared to the corresponding dimeric reference (DiPnc). Thus, HexPnc establishes crucial design aspects for achieving efficient triplet dissociation in strongly coupled systems by providing avenues for diffusive separation of 1 (T1 T1 ), while, concomitantly, retaining strong interchromophore coupling which preserves rapid formation of 1 (T1 T1 ).
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Affiliation(s)
- Phillip M Greißel
- Department of Chemistry and Pharmacy &, Interdisciplinary Center for Molecular Materials (ICMM), Friedrich-Alexander-University Erlangen-Nuremberg, Egerlandstraße 3, 91058, Erlangen, Germany
| | - Dominik Thiel
- Department of Chemistry and Pharmacy &, Interdisciplinary Center for Molecular Materials (ICMM), Friedrich-Alexander-University Erlangen-Nuremberg, Egerlandstraße 3, 91058, Erlangen, Germany
| | - Henrik Gotfredsen
- Department of Chemistry, University of Alberta, 11227 Saskatchewan Drive, Edmonton, Alberta, T6G 2G2, Canada
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, Copenhagen Ø, Denmark
- Current address: Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, UK
| | - Lan Chen
- Department of Chemistry, University of Alberta, 11227 Saskatchewan Drive, Edmonton, Alberta, T6G 2G2, Canada
| | - Marcel Krug
- Department of Chemistry and Pharmacy &, Interdisciplinary Center for Molecular Materials (ICMM), Friedrich-Alexander-University Erlangen-Nuremberg, Egerlandstraße 3, 91058, Erlangen, Germany
| | - Ilias Papadopoulos
- Department of Chemistry and Pharmacy &, Interdisciplinary Center for Molecular Materials (ICMM), Friedrich-Alexander-University Erlangen-Nuremberg, Egerlandstraße 3, 91058, Erlangen, Germany
- Department of Applied Chemistry, Graduate School of Engineering, Center for Molecular Systems (CMS), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Mark Miskolzie
- Department of Chemistry, University of Alberta, 11227 Saskatchewan Drive, Edmonton, Alberta, T6G 2G2, Canada
| | - Tomás Torres
- Department of Organic Chemistry, Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Campus de Cantoblanco, 28049, Madrid, Spain
- IMDEA Nanociencia, C/Faraday 9, Cantoblanco, 28049, Madrid, Spain
| | - Timothy Clark
- Department of Chemistry and Pharmacy &, Computer-Chemie-Center (CCC), Friedrich-Alexander-University Erlangen-Nuremberg, Nägelsbachstraße 25, 91052, Erlangen, Germany
| | - Mogens Brøndsted Nielsen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, Copenhagen Ø, Denmark
| | - Rik R Tykwinski
- Department of Chemistry, University of Alberta, 11227 Saskatchewan Drive, Edmonton, Alberta, T6G 2G2, Canada
| | - Dirk M Guldi
- Department of Chemistry and Pharmacy &, Interdisciplinary Center for Molecular Materials (ICMM), Friedrich-Alexander-University Erlangen-Nuremberg, Egerlandstraße 3, 91058, Erlangen, Germany
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6
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Yamauchi A, Tanaka K, Fuki M, Fujiwara S, Kimizuka N, Ryu T, Saigo M, Onda K, Kusumoto R, Ueno N, Sato H, Kobori Y, Miyata K, Yanai N. Room-temperature quantum coherence of entangled multiexcitons in a metal-organic framework. SCIENCE ADVANCES 2024; 10:eadi3147. [PMID: 38170775 PMCID: PMC10775993 DOI: 10.1126/sciadv.adi3147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 11/28/2023] [Indexed: 01/05/2024]
Abstract
Singlet fission can generate an exchange-coupled quintet triplet pair state 5TT, which could lead to the realization of quantum computing and quantum sensing using entangled multiple qubits even at room temperature. However, the observation of the quantum coherence of 5TT has been limited to cryogenic temperatures, and the fundamental question is what kind of material design will enable its room-temperature quantum coherence. Here, we show that the quantum coherence of singlet fission-derived 5TT in a chromophore-integrated metal-organic framework can be over hundred nanoseconds at room temperature. The suppressed motion of the chromophores in ordered domains within the metal-organic framework leads to the enough fluctuation of the exchange interaction necessary for 5TT generation but, at the same time, does not cause severe 5TT decoherence. Furthermore, the phase and amplitude of quantum beating depend on the molecular motion, opening the way to room-temperature molecular quantum computing based on multiple quantum gate control.
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Affiliation(s)
- Akio Yamauchi
- Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Kentaro Tanaka
- Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Masaaki Fuki
- Molecular Photoscience Research Center, Kobe University, 1-1, Rokkodai-cho, Nada-ku, Kobe 657-8501, Japan
- CREST, JST, Honcho 4-1-8, Kawaguchi, Saitama 332-0012, Japan
| | - Saiya Fujiwara
- RIKEN, RIKEN Center for Emergent Matter Science, Wako, Saitama 351-0198, Japan
| | - Nobuo Kimizuka
- Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
- Center for Molecular Systems (CMS), Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Tomohiro Ryu
- Department of Chemistry, Graduate School of Science, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Masaki Saigo
- Department of Chemistry, Graduate School of Science, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Ken Onda
- Department of Chemistry, Graduate School of Science, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Ryota Kusumoto
- Department of Chemistry, Graduate School of Science, Kobe University, 1-1, Rokkodai-cho, Nada-ku, Kobe 657-8501, Japan
| | - Nami Ueno
- Graduate School of Human Development and Environment, Kobe University, 3-11 Tsurukabuto, Nada, Kobe 657-8501, Japan
| | - Harumi Sato
- Graduate School of Human Development and Environment, Kobe University, 3-11 Tsurukabuto, Nada, Kobe 657-8501, Japan
| | - Yasuhiro Kobori
- Molecular Photoscience Research Center, Kobe University, 1-1, Rokkodai-cho, Nada-ku, Kobe 657-8501, Japan
- CREST, JST, Honcho 4-1-8, Kawaguchi, Saitama 332-0012, Japan
- Department of Chemistry, Graduate School of Science, Kobe University, 1-1, Rokkodai-cho, Nada-ku, Kobe 657-8501, Japan
| | - Kiyoshi Miyata
- CREST, JST, Honcho 4-1-8, Kawaguchi, Saitama 332-0012, Japan
- Department of Chemistry, Graduate School of Science, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Nobuhiro Yanai
- Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
- CREST, JST, Honcho 4-1-8, Kawaguchi, Saitama 332-0012, Japan
- Center for Molecular Systems (CMS), Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
- FOREST, JST, Honcho 4-1-8, Kawaguchi, Saitama 332-0012, Japan
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7
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Majumder K, Mukherjee S, Panjwani NA, Lee J, Bittl R, Kim W, Patil S, Musser AJ. Controlling Intramolecular Singlet Fission Dynamics via Torsional Modulation of Through-Bond versus Through-Space Couplings. J Am Chem Soc 2023; 145:20883-20896. [PMID: 37705333 DOI: 10.1021/jacs.3c06075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2023]
Abstract
Covalent dimers, particularly pentacenes, are the dominant platform for developing a mechanistic understanding of intramolecular singlet fission (iSF). Numerous studies have demonstrated that a photoexcited singlet state in these structures can rapidly and efficiently undergo exciton multiplication to form a correlated pair of triplets within a single molecule, with potential applications from photovoltaics to quantum information science. One of the most significant barriers limiting such dimers is the fast recombination of the triplet pair, which prevents spatial separation and the formation of long-lived triplet states. There is an ever-growing need to develop general synthetic strategies to control the evolution of triplets following iSF and enhance their lifetime. Here, we rationally tune the dihedral angle and interchromophore separation between pairs of pentacenes in a systematic series of bridging units to facilitate triplet separation. Through a combination of transient optical and spin-resonance techniques, we demonstrate that torsion within the linker provides a simple synthetic handle to tune the fine balance between through-bond and through-space interchromophore couplings that steer iSF. We show that the full iSF pathway from femtosecond to microsecond timescales is tuned through the static coupling set by molecular design and structural fluctuations that can be biased through steric control. Our approach highlights a straightforward design principle to generate paramagnetic spin pair states with higher yields.
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Affiliation(s)
- Kanad Majumder
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| | - Soham Mukherjee
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Naitik A Panjwani
- Berlin Joint EPR Lab, Fachbereich Physik, Freie Universität, Berlin, Berlin 14195, Berlin, Germany
| | - Jieun Lee
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea
| | - Robert Bittl
- Berlin Joint EPR Lab, Fachbereich Physik, Freie Universität, Berlin, Berlin 14195, Berlin, Germany
| | - Woojae Kim
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea
| | - Satish Patil
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| | - Andrew J Musser
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
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8
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Kim J, Teo HT, Hong Y, Liau YC, Yim D, Han Y, Oh J, Kim H, Chi C, Kim D. Leveraging Charge-Transfer Interactions in Through-Space-Coupled Pentacene Dendritic Oligomer for Singlet Exciton Fission. J Am Chem Soc 2023; 145:19812-19823. [PMID: 37656929 DOI: 10.1021/jacs.3c05660] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/03/2023]
Abstract
Singlet exciton fission in organic chromophores has received much attention during the past decade. Inspired by numerous spectroscopic studies in the solid state, there have been vigorous efforts to study singlet exciton fission dynamics in covalently bonded oligomers, which aims to investigate underlying mechanisms of this intriguing process in simplified model systems. In terms of through-space orbital interactions, however, most of covalently bonded pentacene oligomers studied so far fall into weakly interacting systems since they manifest chain-like structures based on various (non)conjugated linkers. Therefore, it remains as a compelling question to answer how through-space interactions in the solid state intervene this photophysical process since it is hypersensitive to displacements and orientations between neighboring chromophores. Herein, as one of experimental studies to answer this question, we introduced a tight-packing dendritic structure whose mesityl-pentacene constituents are coupled via moderate through-space orbital interactions. Based on the comparison with a suitably controlled dendritic structure, which is in a weak coupling regime, important mechanistic viewpoints are tackled such as configurational mixings between singlet, charge-transfer, and triplet pair states and the role of chromophore multiplication. We underscore that our through-space-coupled dendritic oligomer in a quasi-intermediate coupling regime provides a hint on the interplay of multiconfigurational excited-states, which might have drawn complexity in singlet exciton fission kinetics throughout numerous solid-state morphologies.
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Affiliation(s)
- Juno Kim
- Department of Chemistry, Spectroscopy Laboratory for Functional π-Electronic Systems, Yonsei University, Seoul 03722, Korea
| | - Hao Ting Teo
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Yongseok Hong
- Department of Chemistry, Spectroscopy Laboratory for Functional π-Electronic Systems, Yonsei University, Seoul 03722, Korea
| | - Yuan Cheng Liau
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Daniel Yim
- Department of Chemistry, Incheon National University, Incheon 22012, Korea
| | - Yi Han
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Juwon Oh
- Department of ICT Environmental Health System and Department of Chemistry, Soonchunhyang University, Asan 31538, Korea
| | - Hyungjun Kim
- Department of Chemistry, Incheon National University, Incheon 22012, Korea
| | - Chunyan Chi
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Dongho Kim
- Department of Chemistry, Spectroscopy Laboratory for Functional π-Electronic Systems, Yonsei University, Seoul 03722, Korea
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