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Shaik S. My Vision of Electric-Field-Aided Chemistry in 2050. ACS PHYSICAL CHEMISTRY AU 2024; 4:191-201. [PMID: 38800723 PMCID: PMC11117677 DOI: 10.1021/acsphyschemau.3c00064] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 01/06/2024] [Accepted: 01/09/2024] [Indexed: 05/29/2024]
Abstract
This manuscript outlines my outlook on the development of electric-field (EF)-mediated-chemistry and the vision of its state by 2050. I discuss applications of oriented-external electric-fields (OEEFs) on chemical reactions and proceed with relevant experimental verifications. Subsequently, the Perspective outlines other ways of generating EFs, e.g., by use of pH-switchable charges, ionic additives, water droplets, and so on. A special section summarizes conceptual principles for understanding and predicting OEEF effects, e.g., the "reaction-axis rule", the capability of OEEFs to act as tweezers that orient reactants and accelerate their reaction, etc. Finally, I discuss applications of OEEFs in continuous-flow setups, which may, in principle, scale-up to molar concentrations. The Perspective ends with the vision that by 2050, OEEF usage will change chemical education, if not also the art of making new molecules.
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Affiliation(s)
- Sason Shaik
- Institute of Chemistry, The
Hebrew University of Jerusalem, Jerusalem 9190401, Israel
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2
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Bofill JM, Severi M, Quapp W, Ribas-Ariño J, de P R Moreira I, Albareda G. Optimal Oriented External Electric Fields to Trigger a Barrierless Oxaphosphetane Ring Opening Step of the Wittig Reaction. Chemistry 2024; 30:e202400173. [PMID: 38457260 DOI: 10.1002/chem.202400173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 03/05/2024] [Accepted: 03/07/2024] [Indexed: 03/10/2024]
Abstract
The Wittig reaction is one of the most important processes in organic chemistry for the asymmetric synthesis of olefinic compounds. In view of the increasingly acknowledged potentiality of the electric fields in promoting reactions, here we will consider the effect of the oriented external electric field (OEEF) on the second step of Wittig reaction (i. e. the ring opening oxaphosphetane) in a model system for non-stabilized ylides. In particular, we have determined the optimal direction and strength of the electric field that should be applied to annihilate the reaction barrier of the ring opening through the polarizable molecular electric dipole (PMED) model that we have recently developed. We conclude that the application of the optimal external electric field for the oxaphosphetane ring opening favours a Bestmann-like mechanism.
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Affiliation(s)
- Josep Maria Bofill
- Departament de Química Inorgànica i Orgànica, Secció de Química Orgànica, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Marco Severi
- Department of Chemistry G. Ciamician, University of Bologna, Via F. Selmi 2, 40126, Bologna, Italy
| | - Wolfgang Quapp
- Mathematisches Institut, Universität Leipzig, PF 100920, D-04009, Leipzig, Germany
| | - Jordi Ribas-Ariño
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Ibério de P R Moreira
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
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3
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Gutiérrez López MÁ, Tan ML, Renno G, Jozeliūnaitė A, Nué-Martinez JJ, Lopez-Andarias J, Sakai N, Matile S. Anion-π catalysis on carbon allotropes. Beilstein J Org Chem 2023; 19:1881-1894. [PMID: 38116243 PMCID: PMC10729121 DOI: 10.3762/bjoc.19.140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 11/29/2023] [Indexed: 12/21/2023] Open
Abstract
Anion-π catalysis, introduced in 2013, stands for the stabilization of anionic transition states on π-acidic aromatic surfaces. Anion-π catalysis on carbon allotropes is particularly attractive because high polarizability promises access to really strong anion-π interactions. With these expectations, anion-π catalysis on fullerenes has been introduced in 2017, followed by carbon nanotubes in 2019. Consistent with expectations from theory, anion-π catalysis on carbon allotropes generally increases with polarizability. Realized examples reach from enolate addition chemistry to asymmetric Diels-Alder reactions and autocatalytic ether cyclizations. Currently, anion-π catalysis on carbon allotropes gains momentum because the combination with electric-field-assisted catalysis promises transformative impact on organic synthesis.
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Affiliation(s)
| | - Mei-Ling Tan
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
| | - Giacomo Renno
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
| | | | | | | | - Naomi Sakai
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
| | - Stefan Matile
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
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4
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Gutiérrez López MÁ, Ali R, Tan ML, Sakai N, Wirth T, Matile S. Electric field-assisted anion-π catalysis on carbon nanotubes in electrochemical microfluidic devices. SCIENCE ADVANCES 2023; 9:eadj5502. [PMID: 37824606 PMCID: PMC10569703 DOI: 10.1126/sciadv.adj5502] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Accepted: 09/07/2023] [Indexed: 10/14/2023]
Abstract
The vision to control the charges migrating during reactions with external electric fields is attractive because of the promise of general catalysis, emergent properties, and programmable devices. Here, we explore this idea with anion-π catalysis, that is the stabilization of anionic transition states on aromatic surfaces. Catalyst activation by polarization of the aromatic system is most effective. This polarization is induced by electric fields. The use of electrochemical microfluidic reactors to polarize multiwalled carbon nanotubes as anion-π catalysts emerges as essential. These reactors provide access to high fields at low enough voltage to prevent electron transfer, afford meaningful effective catalyst/substrate ratios, and avoid interference from additional electrolytes. Under these conditions, the rate of pyrene-interfaced epoxide-opening ether cyclizations is linearly voltage-dependent at positive voltages and negligible at negative voltages. While electromicrofluidics have been conceived for redox chemistry, our results indicate that their use for supramolecular organocatalysis has the potential to noncovalently electrify organic synthesis in the broadest sense.
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Affiliation(s)
- M. Ángeles Gutiérrez López
- Department of Organic Chemistry, University of Geneva, Quai Ernest Ansermet 30, CH-1211 Geneva 4, Switzerland
| | - Rojan Ali
- School of Chemistry, Cardiff University, Park Place, Main Building, Cardiff CF10 3AT, UK
| | - Mei-Ling Tan
- Department of Organic Chemistry, University of Geneva, Quai Ernest Ansermet 30, CH-1211 Geneva 4, Switzerland
| | - Naomi Sakai
- Department of Organic Chemistry, University of Geneva, Quai Ernest Ansermet 30, CH-1211 Geneva 4, Switzerland
| | - Thomas Wirth
- School of Chemistry, Cardiff University, Park Place, Main Building, Cardiff CF10 3AT, UK
| | - Stefan Matile
- Department of Organic Chemistry, University of Geneva, Quai Ernest Ansermet 30, CH-1211 Geneva 4, Switzerland
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5
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Zhu C, Pham LN, Yuan X, Ouyang H, Coote ML, Zhang X. High Electric Fields on Water Microdroplets Catalyze Spontaneous and Fast Reactions in Halogen-Bond Complexes. J Am Chem Soc 2023; 145:21207-21212. [PMID: 37724917 DOI: 10.1021/jacs.3c08818] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
The use of external electric fields as green and efficient catalysts in synthetic chemistry has recently received significant attention for their ability to deliver remarkable control of reaction selectivity and acceleration of reaction rates. Technically, methods of generating high electric fields in the range of 1-10 V/nm are limited, as in-vacuo techniques have obvious scalability issues. The spontaneous high fields at various interfaces promise to solve this problem. In this study, we take advantage of the spontaneous high electric field at the air-water interface of sprayed water microdroplets in the reactions of several halogen bond systems: Nu:--X-X, where Nu: is pyridine or quinuclidine and X is bromine or iodine. The field facilitates ultrafast electron transfer from Nu:, yielding a Nu-X covalent bond and causing the X-X bond to cleave. This reaction occurs in microseconds in microdroplets but takes days to weeks in bulk solution. Density functional theory calculations predict that the reaction becomes barrier-free in the presence of oriented external electric fields, supporting the notion that the electric fields in the water droplets are responsible for the catalysis. We anticipate that microdroplet chemistry will be an avenue rich in opportunities in the reactions facilitated by high electric fields and provides an alternative way to tackle the scalability problem.
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Affiliation(s)
- Chenghui Zhu
- College of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education), Renewable Energy Conversion and Storage Centre, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Frontiers Science Centre for New Organic Matter, Nankai University, Tianjin, 300071, China
- Beijing National Laboratory for Molecular Sciences, Beijing, 100190, China
| | - Le Nhan Pham
- Institute for Nanoscale Science & Technology, Flinders University, Adelaide, South Australia 5042, Australia
| | - Xu Yuan
- College of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education), Renewable Energy Conversion and Storage Centre, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Frontiers Science Centre for New Organic Matter, Nankai University, Tianjin, 300071, China
- Beijing National Laboratory for Molecular Sciences, Beijing, 100190, China
| | - Haoran Ouyang
- College of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education), Renewable Energy Conversion and Storage Centre, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Frontiers Science Centre for New Organic Matter, Nankai University, Tianjin, 300071, China
- Beijing National Laboratory for Molecular Sciences, Beijing, 100190, China
| | - Michelle L Coote
- Institute for Nanoscale Science & Technology, Flinders University, Adelaide, South Australia 5042, Australia
| | - Xinxing Zhang
- College of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education), Renewable Energy Conversion and Storage Centre, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Frontiers Science Centre for New Organic Matter, Nankai University, Tianjin, 300071, China
- Beijing National Laboratory for Molecular Sciences, Beijing, 100190, China
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Bofill JM, Severi M, Quapp W, Ribas-Ariño J, Moreira IDPR, Albareda G. An algorithm to find the optimal oriented external electrostatic field for annihilating a reaction barrier in a polarizable molecular system. J Chem Phys 2023; 159:114112. [PMID: 37724726 DOI: 10.1063/5.0167749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 08/23/2023] [Indexed: 09/21/2023] Open
Abstract
The use of oriented external electric fields (OEEFs) to promote and control chemical reactivity has motivated many theoretical and computational studies in the last decade to model the action of OEEFs on a molecular system and its effects on chemical processes. Given a reaction, a central goal in this research area is to predict the optimal OEEF (oOEEF) required to annihilate the reaction energy barrier with the smallest possible field strength. Here, we present a model rooted in catastrophe and optimum control theories that allows us to find the oOEEF for a given reaction valley in the potential energy surface (PES). In this model, the effective (or perturbed) PES of a polarizable molecular system is constructed by adding to the original, non-perturbed, PES a term accounting for the interaction of the OEEF with the intrinsic electric dipole and polarizability of the molecular system, so called the polarizable molecular electric dipole (PMED) model. We demonstrate that the oOEEF can be established by locating a point in the original PES with unique topological properties: the optimal barrier breakdown or bond-breaking point (oBBP). The essential feature of the oBBP structure is the fact that this point maintains its topological properties for all the applied OEEFs, also for the unperturbed PES, thus becoming much more relevant than the commonly used minima and transition state structures. The PMED model proposed here has been implemented in an open access package and is shown to successfully predict the oOEEF for two processes: an isomerization reaction of a cumulene derivative and the Huisgen cycloaddition reaction.
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Affiliation(s)
- Josep Maria Bofill
- Departament de Química Inorgànica i Orgànica, Secció de Química Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Marco Severi
- Department of Chemistry G. Ciamician, University of Bologna, Via F. Selmi 2, 40126 Bologna, Italy
| | - Wolfgang Quapp
- Mathematisches Institut, Universität Leipzig, PF 100920, D-04009 Leipzig, Germany
| | - Jordi Ribas-Ariño
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Ibério de P R Moreira
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Guillermo Albareda
- Ideaded, Carrer de la Tecnologia, 35, 08840 Viladecans, Barcelona, Spain
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Gopakumar K, Shaik S, Ramanan R. Two-Way Catalysis in a Diels-Alder Reaction Limits Inhibition Induced by an External Electric Field. Angew Chem Int Ed Engl 2023; 62:e202307579. [PMID: 37530131 DOI: 10.1002/anie.202307579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/18/2023] [Accepted: 08/01/2023] [Indexed: 08/03/2023]
Abstract
Oriented external electric fields (EEFs) act as catalysts that can induce selectivity in chemical reactions. The responses of the Diels-Alder (DA) reaction between butadiene and ethylene (BDE-DA) as well as cyclopentadiene and ethylene (CPDE-DA) towards EEF stimuli are investigated here using density functional theory (B3LYP) calculations. EEF is a vector that catalyzes the reaction in one direction while inhibiting it in the opposite direction. Here we report that the inhibitive direction becomes rate-enhancing after some increase in the EEF. The EEF value that brings about the maximum possible inhibition for the reaction is defined as the electrostatic resistance point (ERP). The possibility of both normal and inverse electron-demand DA reactions causes catalytic activity in both directions of the EEF starting at a unique ERP value. The C5 substituents of cyclopentadiene control the ERP values depending upon the resistance power that the functional group provides against the EEF. The endo and exo diastereomeric transition states of the DA reaction have distinct ERP values and the difference (ΔERP) provides the through-space electrostatic contribution to the stereoselectivity on a relative scale. Thus, the ERP values can be used as a gauge for the electrostatic interactions between substituent groups and external stimuli.
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Affiliation(s)
- Karthik Gopakumar
- Department of Chemistry, National Institute of Technology, Rourkela, Rourkela, Odisha, 769008, India
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, 9190407, Jerusalem, Israel
| | - Rajeev Ramanan
- Department of Chemistry, National Institute of Technology, Rourkela, Rourkela, Odisha, 769008, India
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Amer GE, Razak FIA, Sapari S, Nur H, Setu SA. Elucidating the alkene hydrogenation reaction based on cotton textile reduced graphene oxide under the influence of external electric field: Illustration of new noble method. Heliyon 2023; 9:e14888. [PMID: 37025917 PMCID: PMC10070902 DOI: 10.1016/j.heliyon.2023.e14888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 02/07/2023] [Accepted: 03/21/2023] [Indexed: 03/29/2023] Open
Abstract
The hydrogenation reaction of alkene is one of the most used industrial chemical process for various materials of daily life and energy consumption. This is a heterogeneous reaction and traditionally carried out by metallic catalysis. However, these conventional catalytic hydrogenations of alkene suffer from various setbacks such as catalyst poisoning, less recyclability and are environmentally unfriendly. Therefore, in recent years, researchers have been trying to develop the alternatives to metal catalysis hydrogenation of alkene. Heterogeneous catalysis under the external electric field is considered the future of green catalysis. In this paper, we report a comprehensive investigation dealing with the theoretical basis for simulating the phenomenon of heterogeneous catalysis, on a molecular level, under an external electric field. The illustration of the prospect as well as the effects of the mostly used catalytic systems, reduced graphene oxide, under the influence of external electric fields is provided. Moreover, a noble method of alkene hydrogenation reaction based on cotton textile reduced graphene oxide (CT-RGO) under the influence of an external electric field is introduced. The corresponding theoretical investigation was carried out within the framework of the density functional theory (DFT) method using first-principles calculations. The study has been carried out by elucidating DFT calculations for three different proposed catalytic systems, namely without electricity, with electricity and with an external electric field of 2 milli-Atomic unit. The obtained results indicate that adsorption energy of H2 on the CT-RGO surface is significantly higher when the electric field is applied along the bond axis, suggesting thereby that hydrogenation of alkene can be induced with CT-RGO catalyst support under external electric fields. The obtained results shed light on the effect of the external electricity field on the graphene-hydrogen complex, the activation energy of graphene radicals to achieve the transition states as well as the adsorption of the hydrogen atoms over the graphene surface. Altogether, the theoretical results presented herein suggested that the proposed catalytic system holds promise for facilitating the alkene hydrogenation under external electric fields.
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Kalita S, Bergman H, Dubey KD, Shaik S. How Can Static and Oscillating Electric Fields Serve in Decomposing Alzheimer's and Other Senile Plaques? J Am Chem Soc 2023; 145:3543-3553. [PMID: 36735972 PMCID: PMC9936589 DOI: 10.1021/jacs.2c12305] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Alzheimer's disease is one of the most common neurodegenerative conditions, which are ascribed to extracellular accumulation of β-amyloid peptides into plaques. This phenomenon seems to typify other related neurodegenerative diseases. The present study uses classical molecular-dynamics simulations to decipher the aggregation-disintegration behavior of β-amyloid peptide plaques in the presence of static and oscillating oriented external electric fields (OEEFs). A long-term disintegration of such plaques is highly desirable since this may improve the prospects of therapeutic treatments of Alzheimer's disease and of other neurodegenerative diseases typified by senile plaques. Our study illustrates the spontaneous aggregation of the β-amyloid, its prevention and breakdown when OEEF is applied, and the fate of the broken aggregate when the OEEF is removed. Notably, we demonstrate that the usage of an oscillating OEEF on β-amyloid aggregates appears to lead to an irreversible disintegration. Insight is provided into the root causes of the various modes of aggregation, as well as into the different fates of OEEF-induced disintegration in oscillating vs static fields. Finally, our simulation results are compared to the well-established TTFields and the Deep Brain Stimulation (DBS) therapies, which are currently used options for treatments of Alzheimer's disease and other related neurodegenerative diseases.
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Affiliation(s)
- Surajit Kalita
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
| | - Hagai Bergman
- Department of Medical Neurobiology (Physiology), The Hebrew University of Jerusalem, Hadassah Medical Faculty, Jerusalem, Israel 91120
| | - Kshatresh Dutta Dubey
- Department of Chemistry, School of Natural Sciences, Shiv Nadar Institution of Eminence, Greater Noida, Uttar Pradesh 201314, India
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
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Ma Z, Yan Z, Li X, Chung LW. Quantum Tunneling in Reactions Modulated by External Electric Fields: Reactivity and Selectivity. J Phys Chem Lett 2023; 14:1124-1132. [PMID: 36705472 DOI: 10.1021/acs.jpclett.2c03461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Quantum tunneling and external electric fields (EEFs) can promote some reactions. However, the synergetic effect of an EEF on a tunneling-involving reaction and its temperature-dependence is not very clear. In this study, we extensively investigated how EEFs affect three reactions that involve hydrogen- or (ground- and excited-state) carbon-tunneling using reliable DFT, DLPNO-CCSD(T1), and variational transition-state theory methods. Our study revealed that oriented EEFs can significantly reduce the barrier and corresponding barrier width (and vice versa) through more electrostatic stabilization in transition states. These EEF effects enhance the nontunneling and tunneling-involving rates. Such EEF effects also decrease the crossover temperatures and quantum tunneling contribution, albeit with lower and thinner barriers. Moreover, EEFs can modulate and switch on/off the tunneling-driven 1,2-H migration of hydroxycarbenes under cryogenic conditions. Furthermore, our study predicts for the first time that EEF/tunneling synergy can control the chemo- or site-selectivity of one molecule bearing two similar/same reactive sites.
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Affiliation(s)
- Zhifeng Ma
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
| | - Zeyin Yan
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
| | - Xin Li
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
| | - Lung Wa Chung
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
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11
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Akamatsu M. Inner and Interfacial Environmental Nanoarchitectonics of Supramolecular Assemblies Formed by Amphiphiles: from Emergence to Application. J Oleo Sci 2023; 72:105-116. [PMID: 36740247 DOI: 10.5650/jos.ess22364] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
The inner and interfacial environments of self-assemblies provide fascinating nano-space for selective and efficient chemical reactions and processes. In biological systems, various chemical reactions, molecular recognition, and transport occur precisely and selectively by virtue of effective molecular interactions on biological membranes and proteins. Considering these advantages and the concept of nanoarchitectonics, we demonstrated that the photochromism of a lophine dimer was accelerated by using confined nano-spaces formed by surfactant micelles. The photoresponsive micelles were used for the rapid controlled release of a model drug upon ultraviolet light irradiation. Furthermore, selective ion recognition inside the self-assembled molecular films at the interfaces was investigated. The anion-π interaction between the anion and an electron-deficient aromatic ring was evaluated on a solid substrate modified with a naphthalenediimide (NDI) analog. Force curve measurements afforded a quantitative analysis of anion-π interactions on the NDI film. The strength of anion-π interactions is regulated by the electric fields on the electrode. An optical probe was developed to visualize the distribution of Cs ions in the soil, plant bodies, and aqueous media using an optode system. Advances in the development of molecular functional systems are expected based not only on molecular structures but also on the spaces and environments produced by them.
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Affiliation(s)
- Masaaki Akamatsu
- Department of Pure and Applied Chemistry, Faculty of Science and Technology, Tokyo University of Science.,Research Institute for Science and Technology, Tokyo University of Science
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12
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A catastrophe theory-based model for optimal control of chemical reactions by means of oriented electric fields. Theor Chem Acc 2023. [DOI: 10.1007/s00214-023-02959-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
AbstractThe effect of oriented external electric fields (OEEF) on chemical reactivity has been studied theoretically and computationally in the last decades. A central goal in this research area is to predict the orientation and the smallest amplitude electric field that renders a barrierless chemical process with the smallest possible strength. Recently, a model to find the optimal electric field has been proposed and described (Bofill JM et al., J. Chem. Theory Comput. 18:935, 2022). We here proof that this model is based on catastrophe and optimum control theories. Based on both theories a technical treatment of the model is given and applied to a two-dimensional generic example that provides insight into its nature and capability. Finally, the model is applied to determine the optimal OEEF for the trans-to-cis isomerization of a [3]cumulene derivative.
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13
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Cleavage of non-polar C(sp 2)‒C(sp 2) bonds in cycloparaphenylenes via electric field-catalyzed electrophilic aromatic substitution. Nat Commun 2023; 14:293. [PMID: 36653339 PMCID: PMC9849230 DOI: 10.1038/s41467-022-35686-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 12/20/2022] [Indexed: 01/19/2023] Open
Abstract
Electrophilic aromatic substitution (EAS) is one of the most fundamental reactions in organic chemistry. Using an oriented external electric field (OEEF) instead of traditional reagents to tune the EAS reactivity can offer an environmentally friendly method to synthesize aromatic compounds and hold the promise of broadening its scope. Despite these advantages, OEEF catalysis of EAS is difficult to realize, due to the challenge of microscopically orienting OEEF along the direction of electron reorganizations. In this work, we demonstrate OEEF-catalyzed EAS reactions in a series of cycloparaphenylenes (CPPs) using the scanning tunneling microscope break junction (STM-BJ) technique. Crucially, the unique radial π-conjugation of CPPs enables a desired alignment for the OEEF to catalyze the EAS with Au STM tip (or substrate) acting as an electrophile. Under mild conditions, the OEEF-catalyzed EAS reactions can cleave the inherently inert C(sp2)-C(sp2) bond, leading to high-yield (~97%) formation of linear oligophenylenes terminated with covalent Au-C bonds. These results not only demonstrate the feasibility of OEEF catalysis of EAS, but also offer a way of exploring new mechanistic principles of classic organic reactions aided by OEEF.
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14
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Blyth MT, Coote ML. Manipulation of N-heterocyclic carbene reactivity with practical oriented electric fields. Phys Chem Chem Phys 2023; 25:375-383. [DOI: 10.1039/d2cp04507a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Electric fields can be used to tune the nucleophilicity and electrophilicity of N-heterocyclic carbenes and enhance their catalytic activity.
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Affiliation(s)
- Mitchell T. Blyth
- Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory 2601, Australia
| | - Michelle L. Coote
- Institute for Nanoscale Science and Technology, College of Science and Engineering, Flinders University, Bedford Park, South Australia 5042, Australia
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15
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Liu JJ, Fu JJ, Shen X, Liu T, Cheng FX. The effect of dicarboxylic acid isomer on the photochromism of naphthalenediimide-based metal-organic frameworks. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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16
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Liu JJ, Fu JJ, Liu T, Cheng FX. Photochromic polyoxometalate/naphthalenediimide hybrid structure with visible-light-driven dye degradation. J SOLID STATE CHEM 2022. [DOI: 10.1016/j.jssc.2022.123236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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17
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Belousov R, Hassanali A, Roldán É. Statistical physics of inhomogeneous transport: Unification of diffusion laws and inference from first-passage statistics. Phys Rev E 2022; 106:014103. [PMID: 35974517 DOI: 10.1103/physreve.106.014103] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
Abstract
Characterization of composite materials, whose properties vary in space over microscopic scales, has become a problem of broad interdisciplinary interest. In particular, estimation of the inhomogeneous transport coefficients, e.g., the diffusion coefficient or the heat conductivity, which shape important processes in biology and engineering, is a challenging task. The analysis of such systems is further complicated because two alternative formulations of the inhomogeneous transport equations exist in the literature-the Smoluchowski and Fokker-Planck equations, which are also related to the so-called Ito-Stratonovich dilemma. Using the theory of statistical physics, we show that the two formulations, usually regarded as distinct models, are physically equivalent. From this result we develop efficient estimates for the transverse space-dependent diffusion coefficient in fluids near a phase boundary. Our method requires only measurements of escape probabilities and mean exit times of molecules leaving a narrow spatial region. We test our estimates in three case studies: (i) a Langevin model of a Büttikker-Landauer ratchet; atomistic molecular-dynamics simulations of liquid-water molecules in contact with (ii) vapor, and (iii) soap (surfactant) film which has promising applications in physical chemistry. Our analysis reveals that near the surfactant monolayer the mobility of water molecules is slowed down almost twice with respect to the bulk liquid. Moreover, the diffusion coefficient of water correlates with the transition from hydrophilic to hydrophobic parts of the film.
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Affiliation(s)
- Roman Belousov
- ICTP-The Abdus Salam International Centre for Theoretical Physics, Strada Costiera 11, 34151 Trieste, Italy
| | - Ali Hassanali
- ICTP-The Abdus Salam International Centre for Theoretical Physics, Strada Costiera 11, 34151 Trieste, Italy
| | - Édgar Roldán
- ICTP-The Abdus Salam International Centre for Theoretical Physics, Strada Costiera 11, 34151 Trieste, Italy
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18
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Wu J, Long T, Wang H, Liang JX, Zhu C. Oriented External Electric Fields Regurating the Reaction Mechanism of CH4 Oxidation Catalyzed by Fe(IV)-Oxo-Corrolazine: Insight from Density Functional Calculations. Front Chem 2022; 10:896944. [PMID: 35844657 PMCID: PMC9277104 DOI: 10.3389/fchem.2022.896944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 06/08/2022] [Indexed: 11/13/2022] Open
Abstract
Methane is the simplest alkane and can be used as an alternative energy source for oil and coal, but the greenhouse effect caused by its leakage into the air is not negligible, and its conversion into liquid methanol not only facilitates transportation, but also contributes to carbon neutrality. In order to find an efficient method for converting methane to methanol, CH4 oxidation catalyzed by Fe(IV)-Oxo-corrolazine (Fe(IV)-Oxo-Cz) and its reaction mechanism regulation by oriented external electric fields (OEEFs) are systematically studied by density functional calculations. The calculations show that Fe(IV)-Oxo-Cz can abstract one H atom from CH4 to form the intermediate with OH group connecting on the corrolazine ring, with the energy barrier of 25.44 kcal mol−1. And then the product methanol is formed through the following rebound reaction. Moreover, the energy barrier can be reduced to 20.72 kcal mol−1 through a two-state reaction pathway. Furthermore, the effect of OEEFs on the reaction is investigated. We found that OEEFs can effectively regulate the reaction by adjusting the stability of the reactant and the transition state through the interaction of electric field-molecular dipole moment. When the electric field is negative, the energy barrier of the reaction decreases with the increase of electric intensity. Moreover, the OEEF aligned along the intrinsic Fe‒O reaction axis can effectively regulate the ability of forming the OH on the corrolazine ring by adjusting the charges of O and H atoms. When the electric field intensity is −0.010 a.u., the OH can be directly rebounded to the CH3· before it is connecting on the corrolazine ring, thus forming the product directly from the transition state without passing through the intermediate with only an energy barrier of 17.34 kcal mol−1, which greatly improves the selectivity of the reaction.
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Affiliation(s)
| | | | | | | | - Chun Zhu
- *Correspondence: Jin-Xia Liang, ; Chun Zhu,
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19
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Wan M, Yue H, Notarangelo J, Liu H, Che F. Deep Learning-Assisted Investigation of Electric Field-Dipole Effects on Catalytic Ammonia Synthesis. JACS AU 2022; 2:1338-1349. [PMID: 35783174 PMCID: PMC9241008 DOI: 10.1021/jacsau.2c00003] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 03/30/2022] [Accepted: 03/31/2022] [Indexed: 05/21/2023]
Abstract
External electric fields can modify binding energies of reactive surface species and enhance catalytic performance of heterogeneously catalyzed reactions. In this work, we used density functional theory (DFT) calculations-assisted and accelerated by a deep learning algorithm-to investigate the extent to which ruthenium-catalyzed ammonia synthesis would benefit from application of such external electric fields. This strategy allows us to determine which electronic properties control a molecule's degree of interaction with external electric fields. Our results show that (1) field-dependent adsorption/reaction energies are closely correlated to the dipole moments of intermediates over the surface, (2) a positive field promotes ammonia synthesis by lowering the overall energetics and decreasing the activation barriers of the potential rate-limiting steps (e.g., NH2 hydrogenation) over Ru, (3) a positive field (>0.6 V/Å) favors the reaction mechanism by avoiding kinetically unfavorable N≡N bond dissociation over Ru(1013), and (4) local adsorption environments (i.e., dipole moments of the intermediates in the gas phase, surface defects, and surface coverage of intermediates) influence the resulting surface adsorbates' dipole moments and further modify field-dependent reaction energetics. The deep learning algorithm developed here accelerates field-dependent energy predictions with acceptable accuracies by five orders of magnitudes compared to DFT alone and has the capacity of transferability, which can predict field-dependent energetics of other catalytic surfaces with high-quality performance using little training data.
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Affiliation(s)
- Mingyu Wan
- Department
of Chemical Engineering, University of Massachusetts
Lowell, Lowell 01854, United States
| | - Han Yue
- Michtom
School of Computer Science, Brandeis University, Waltham, Massachusetts 02453, United States
| | - Jaime Notarangelo
- Department
of Chemical Engineering, University of Massachusetts
Lowell, Lowell 01854, United States
| | - Hongfu Liu
- Michtom
School of Computer Science, Brandeis University, Waltham, Massachusetts 02453, United States
| | - Fanglin Che
- Department
of Chemical Engineering, University of Massachusetts
Lowell, Lowell 01854, United States
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20
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Liu Z, Li X, Chen J, Li C, Luo F, Cheng FX, Liu JJ. Merging of the photocatalyst decatungstate and naphthalene diimide in a hybrid structure for the oxidative coupling of amines. Dalton Trans 2022; 51:8472-8479. [PMID: 35603783 DOI: 10.1039/d2dt01003h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Designing and developing novel hybrid materials for the effective photoconversion of organic substrates is of great importance. Crystalline hybrid heterostructures, as an attractive class of material, are composed of semiconducting organic and inorganic components with fast-responsive charge-separated properties and thus they are promising photocatalysts. Naphthalene diimides (NDIs) and decatungstate (W10O324-) are two versatile semiconductor components that have been utilized as building blocks for the construction of functional materials for various applications. In this context, we demonstrated that the combination of an electron-deficient NDI derivative with W10O324- resulted in an organic-inorganic hybrid compound, namely Zn2(DPNDI)(W10O32)(DMA)6 (DPNDI = N,N'-di-(4-pyridyl)-1,4,5,8-naphthalene diimide) (1). Because of consecutive photo-induced electron transfer processes among the components, this hybrid compound exhibits fast-responsive reversible photochromic properties, and it efficiently photocatalytically oxidizes amines to imines under mild conditions with high yields and an excellent substrate application range.
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Affiliation(s)
- Zhengfen Liu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Xiaobo Li
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Jian Chen
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Chao Li
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Fumang Luo
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Fei-Xiang Cheng
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Jian-Jun Liu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
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21
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Liu T, Shen X, Liu Z, Zhang F, Liu JJ. An electron-deficient MOF as an efficient electron-transfer catalyst for selective oxidative carbon-carbon coupling of 2,6-di- tert-butylphenol. Dalton Trans 2022; 51:8234-8239. [PMID: 35575225 DOI: 10.1039/d2dt00869f] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Naphthalene diimides (NDIs), a type of electron-deficient dye molecule with high quadrupole moment and excellent redox activity, have been utilized in various fields, such as energy transfer, chemical sensing, anion transport, and photo-/electrochromic materials. In this study, an electron-deficient metal-organic framework with one-dimensional channels, Eu2(BBNDI)3(DMF)2 (MOF 1) (H2BBNDI = N,N'-bis(3-benzoic acid)naphthalene diimide), was successfully constructed based on the naphthalene diimide derivative. Because of the generation of NDI radicals by electron transfer between components, this material exhibits fast-responsive reversible photochromic properties. Moreover, it shows high efficiency and selective oxidation of 2,6-di-tert-butylphenol to its quinone derivative, aldehyde, and dimeric or trimeric phenol derivative by controlling the reaction conditions.
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Affiliation(s)
- Teng Liu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Xianfu Shen
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Zhengfen Liu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Feng Zhang
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
| | - Jian-Jun Liu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China.
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22
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Bofill JM, Quapp W, Albareda G, Moreira IDPR, Ribas-Ariño J. Controlling Chemical Reactivity with Optimally Oriented Electric Fields: A Generalization of the Newton Trajectory Method. J Chem Theory Comput 2022; 18:935-952. [PMID: 35044173 DOI: 10.1021/acs.jctc.1c00943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The use of oriented external electric fields (OEEF) as a tool to accelerate chemical reactions has recently attracted much interest. A new model to calculate the optimal OEEF of the least intensity to induce a barrierless chemical reaction path is presented. A suitable ansatz is provided by defining an effective potential energy surface (PES), which considers the unperturbed or original PES of the molecular reactive system and the action of a constant OEEF on the overall dipole moment of system. Based on a generalization of the Newton Trajectories (NT) method, it is demonstrated that the optimal OEEF can be determined upon locating a special point of the potential energy surface (PES), the so-called "optimal bond-breaking point" (optimal BBP), for which two different algorithms are proposed. At this point, the gradient of the original or unperturbed PES is an eigenvector of zero eigenvalue of the Hessian matrix of the effective PES. A thorough discussion of the geometrical aspects of the optimal BBP and the optimal OEEF is provided using a two-dimensional model, and numerical calculations of the optimal OEEF for a SN2 reaction and the 1,3-dipolar retrocycloaddition of isoxazole to fulminic acid plus acetylene reaction serve as a proof of concept. The knowledge of the orientation of optimal OEEF provides a practical way to reduce the effective barrier of a given chemical process.
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Affiliation(s)
- Josep Maria Bofill
- Departament de Química Inorgànica i Orgànica, Secció de Química Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Wolfgang Quapp
- Mathematisches Institut, Universität Leipzig, PF 100920, D-04009 Leipzig, Germany
| | - Guillermo Albareda
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Max Planck Institute for the Structure and Dynamics of Matter and Center for Free Electron Laser Science, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Ibério de P R Moreira
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Jordi Ribas-Ariño
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
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23
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Liu JJ, Fu JJ, Liu T, Shen X, Cheng FX. The modulation effect of an electron-rich guest on the luminescence of naphthalene diimide-based metal–organic frameworks. Inorg Chem Front 2022. [DOI: 10.1039/d2qi00768a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
A series of host–guest MOF materials were successfully fabricated by virtue of donor–acceptor interactions, which exhibit color-tunable emissions in a wide wavelength range by rational selection of guest molecules.
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Affiliation(s)
- Jian-Jun Liu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China
| | - Jia-Jia Fu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China
| | - Teng Liu
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China
| | - Xianfu Shen
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China
| | - Fei-Xiang Cheng
- College of Chemistry and Environmental Science, Qujing Normal University, Qujing 655011, China
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24
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Xu X, Yan S, Hou X, Song W, Wang L, Wu T, Qi M, Wu J, Rao Y, Wang B, Liu L. Local Electric Field Modulated Reactivity of Pseudomonas aeruginosa Acid Phosphatase for Enhancing Phosphorylation of l-Ascorbic Acid. ACS Catal 2021. [DOI: 10.1021/acscatal.1c04200] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Xin Xu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Shengheng Yan
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, Xiamen University, Xiamen 360015, P. R. China
| | - Xiaodong Hou
- State Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, P. R. China
| | - Wei Song
- School of Pharmaceutical Science, Jiangnan University, Wuxi 214122, P. R. China
| | - Lei Wang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Tianfu Wu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Mengya Qi
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Jing Wu
- School of Pharmaceutical Science, Jiangnan University, Wuxi 214122, P. R. China
| | - Yijian Rao
- State Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, P. R. China
| | - Binju Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, Xiamen University, Xiamen 360015, P. R. China
| | - Liming Liu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
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25
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Luo N, Ao YF, Wang DX, Wang QQ. Putting Anion-π Interactions at Work for Catalysis. Chemistry 2021; 28:e202103303. [PMID: 34658085 DOI: 10.1002/chem.202103303] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Indexed: 12/21/2022]
Abstract
Since its discovery two decades ago, anion-π interaction has been increasingly recognized as an important driving force. Extensive theoretical and experimental efforts on the ground-state anion-π binding and recognition have laid the bases for exploring its relevance in catalysis. Accordingly, the concept of "anion-π catalysis" that employing an electron-deficient π surface (π-acidic surface) for anionic reaction intermediate and transition state stabilization has emerged. This article shortly reviews the emergence and development of this concept, aiming to provide an emphasis on the general concept and key progress in this exciting area. To highlight the essential contribution of anion-π interactions, the contents are organized according to their role engaged in catalytic process, for example from both ground-state and transition-state stabilization to solely transition-state stabilization, mainly by a single π-face, and to cooperative π-face activation. A concluding remark and outlook on future development of this field is also given.
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Affiliation(s)
- Na Luo
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Yu-Fei Ao
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - De-Xian Wang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Qi-Qiang Wang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
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26
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Wang DY, Si Y, Guo W, Fu Y. Electrosynthesis of 1,4-bis(diphenylphosphanyl) tetrasulfide via sulfur radical addition as cathode material for rechargeable lithium battery. Nat Commun 2021; 12:3220. [PMID: 34050159 PMCID: PMC8163837 DOI: 10.1038/s41467-021-23521-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 04/28/2021] [Indexed: 11/09/2022] Open
Abstract
Organic electrodes are promising as next generation energy storage materials originating from their enormous chemical diversity and electrochemical specificity. Although organic synthesis methods have been extended to a broad range, facile and selective methods are still needed to expose the corners of chemical space. Herein, we report the organopolysulfide, 1,4-bis(diphenylphosphanyl)tetrasulfide, which is synthesized by electrochemical oxidation of diphenyl dithiophosphinic acid featuring the cleavage of a P-S single bond and a sulfur radical addition reaction. Density functional theory proves that the external electric field triggers the intramolecular rearrangement of diphenyl dithiophosphinic acid through dehydrogenation and sulfur migration along the P-S bond axis. Impressively, the Li/bis(diphenylphosphanyl)tetrasulfide cell exhibits the high discharge voltage of 2.9 V and stable cycling performance of 500 cycles with the capacity retention of 74.8%. Detailed characterizations confirm the reversible lithiation/delithiation process. This work demonstrates that electrochemical synthesis offers the approach for the preparation of advanced functional materials.
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Affiliation(s)
- Dan-Yang Wang
- College of Chemistry, Zhengzhou University, Zhengzhou, P. R. China
| | - Yubing Si
- College of Chemistry, Zhengzhou University, Zhengzhou, P. R. China
| | - Wei Guo
- College of Chemistry, Zhengzhou University, Zhengzhou, P. R. China
| | - Yongzhu Fu
- College of Chemistry, Zhengzhou University, Zhengzhou, P. R. China.
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27
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Akamatsu M, Kimura A, Yamanaga K, Sakai K, Sakai H. Anion-π interaction at the solid/water interfaces. Chem Commun (Camb) 2021; 57:4650-4653. [PMID: 33861227 DOI: 10.1039/d1cc01186c] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Anion-π interaction has been found to play a key role in interfacial phenomena. In this study, we evaluated the anion-π interactions at the solid/water interface. Anion adsorption originating from anion-π interaction at the interfaces followed the hydration energy and the presence of conjugated systems of the anions by the QCM measurements. Force curve measurements revealed that the single-molecule force of anion-π interaction between an NDI unit and the negatively charged surface of the cantilever was ∼40 pN. To the best of our knowledge, this is the first example of obtaining a single-molecule force for anion-π interactions.
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Affiliation(s)
- Masaaki Akamatsu
- Department of Pure and Applied Chemistry, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan and Research Institute for Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Ayumi Kimura
- Department of Pure and Applied Chemistry, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Koji Yamanaga
- Department of Pure and Applied Chemistry, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Kenichi Sakai
- Department of Pure and Applied Chemistry, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan and Research Institute for Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Hideki Sakai
- Department of Pure and Applied Chemistry, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan and Research Institute for Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
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28
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Loewen ND, Pattanayak S, Herber R, Fettinger JC, Berben LA. Quantification of the Electrostatic Effect on Redox Potential by Positive Charges in a Catalyst Microenvironment. J Phys Chem Lett 2021; 12:3066-3073. [PMID: 33750139 DOI: 10.1021/acs.jpclett.1c00406] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Charged functional groups in the secondary coordination sphere (SCS) of a heterogeneous nanoparticle or homogeneous electrocatalyst are of growing interest due to enhancements in reactivity that derive from specific interactions that stabilize substrate binding or charged intermediates. At the same time, accurate benchmarking of electrocatalyst systems most often depends on the development of linear free-energy scaling relationships. However, the thermodynamic axis in those kinetic-thermodynamic correlations is most often obtained by a direct electrochemical measurement of the catalyst redox potential and might be influenced by electrostatic effects of a charged SCS. In this report, we systematically probe positive charges in a SCS and their electrostatic contributions to the electrocatalyst redox potential. A series of 11 iron carbonyl clusters modified with charged and uncharged ligands was probed, and a linear correlation between the νCO absorption band energy and electrochemical redox potentials is observed except where the SCS is positively charged.
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Affiliation(s)
- Natalia D Loewen
- Department of Chemistry, University of California, 1 Shields Avenue, Davis, California 95616, United States
| | - Santanu Pattanayak
- Department of Chemistry, University of California, 1 Shields Avenue, Davis, California 95616, United States
| | - Rolfe Herber
- Racah Institute of Physics, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 91904, Israel
| | - James C Fettinger
- Department of Chemistry, University of California, 1 Shields Avenue, Davis, California 95616, United States
| | - Louise A Berben
- Department of Chemistry, University of California, 1 Shields Avenue, Davis, California 95616, United States
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29
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Liang R, Yu JK, Meisner J, Liu F, Martinez TJ. Electrostatic Control of Photoisomerization in Channelrhodopsin 2. J Am Chem Soc 2021; 143:5425-5437. [PMID: 33794085 DOI: 10.1021/jacs.1c00058] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Channelrhodopsin 2 (ChR2) is the most commonly used tool in optogenetics. Because of its faster photocycle compared to wild-type (WT) ChR2, the E123T mutant of ChR2 is a useful optogenetic tool when fast neuronal stimulation is needed. Interestingly, in spite of its faster photocycle, the initial step of the photocycle in E123T (photoisomerization of retinal protonated Schiff base or RPSB) was found experimentally to be much slower than that of WT ChR2. The E123T mutant replaces the negatively charged E123 residue with a neutral T123 residue, perturbing the electric field around the RPSB. Understanding the RPSB photoisomerization mechanism in ChR2 mutants will provide molecular-level insights into how ChR2 photochemical reactivity can be controlled, which will lay the foundation for improving the design of optogenetic tools. In this work, we combine ab initio nonadiabatic dynamics simulation, excited state free energy calculation, and reaction path search to comprehensively characterize the RPSB photoisomerization mechanism in the E123T mutant of ChR2. Our simulation agrees with previous experiments in predicting a red-shifted absorption spectrum and significant slowdown of photoisomerization in the E123T mutant. Interestingly, our simulations predict similar photoisomerization quantum yields for the mutant and WT despite the differences in excited-state lifetime and absorption maximum. Upon mutation, the neutralization of the negative charge on the E123 residue increases the isomerization barrier, alters the reaction pathway, and changes the relative stability of two fluorescent states. Our findings provide new insight into the intricate role of the electrostatic environment on the RPSB photoisomerization mechanism in microbial rhodopsins.
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Affiliation(s)
- Ruibin Liang
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Jimmy K Yu
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States.,Biophysics Program, Stanford University, Stanford, California 94305, United States
| | - Jan Meisner
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Fang Liu
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Todd J Martinez
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
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30
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Kirshenboim O, Frenklah A, Kozuch S. Switch chemistry at cryogenic conditions: quantum tunnelling under electric fields. Chem Sci 2020; 12:3179-3187. [PMID: 34164085 PMCID: PMC8179409 DOI: 10.1039/d0sc06295b] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
While the influence of intramolecular electric fields is a known feature in enzymes, the use of oriented external electric fields (EEF) to enhance or inhibit molecular reactivity is a promising topic still in its infancy. Herein we will explore computationally the effects that EEF can provoke in simple molecules close to the absolute zero, where quantum tunnelling (QT) is the sole mechanistic option. We studied three exemplary systems, each one with different reactivity features and known QT kinetics: π bond-shifting in pentalene, Cope rearrangement in semibullvalene, and cycloreversion of diazabicyclohexadiene. The kinetics of these cases depend both on the field strength and its direction, usually giving subtle but remarkable changes. However, for the cycloreversion, which suffers large changes on the dipole through the reaction, we also observed striking results. Between the effects caused by the EEF on the QT we observed an inversion of the Arrhenius equation, deactivation of the molecular fluxionality, and stabilization or instantaneous decomposition of the system. All these effects may well be achieved, literally, at the flick of a switch. Adding an external electric field to reactions driven by quantum mechanical tunneling brings a whole new dimension to the idea of switch chemistry.![]()
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Affiliation(s)
- Omer Kirshenboim
- Department of Chemistry, Ben-Gurion University of the Negev Beer-Sheva 841051 Israel
| | - Alexander Frenklah
- Department of Chemistry, Ben-Gurion University of the Negev Beer-Sheva 841051 Israel
| | - Sebastian Kozuch
- Department of Chemistry, Ben-Gurion University of the Negev Beer-Sheva 841051 Israel
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31
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Laconsay CJ, Mallick D, Shaik S. External Electric Fields Interrupt the Concerted Cope Rearrangement of Semibullvalene. J Org Chem 2020; 86:731-738. [PMID: 33280381 DOI: 10.1021/acs.joc.0c02322] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The topic of this paper is whether the mechanism of the degenerate Cope rearrangement of semibullvalene can be affected by the presence of electrostatic fields. Herein, we report that the shape of the energy surface, as demonstrated by an "interrupted" (stepwise) mechanism, is altered in the presence of a copper cation, Cu+. Natural bond-orbital and block-localized wave-function energy decomposition analyses suggest that orbital and electrostatic interactions play a major role in altering the shape of the energy surface. Applying additional external electric fields (EEFs) induces a significant change to the energy surface with Cu+ present but negligible effects in the absence of Cu+. These findings are consistent with recent studies that demonstrate that EEFs more readily stabilize/destabilize systems with larger, more polarizable, dipole moments.
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Affiliation(s)
- Croix J Laconsay
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel.,Department of Chemistry, University of California-Davis, 1 Shields Avenue, Davis, California 95616, United States
| | - Dibyendu Mallick
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel.,Department of Chemistry, Presidency University, Kolkata 700073, India
| | - Sason Shaik
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel
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32
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An Intuitive Electric-field Contribution Decomposition Model for Chemical Processes and Its Applications on Diels-Alder Reactions. Chem Res Chin Univ 2020. [DOI: 10.1007/s40242-020-0143-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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33
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Østrøm I, Ortolan AO, Caramori GF, Mascal M, Muñoz‐Castro A, Parreira RLT. In Silico
Design of Cylindrophanes: The Role of Functional Groups in a Fluoride Selective Host. Chemphyschem 2020; 21:1989-2005. [DOI: 10.1002/cphc.202000321] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 06/23/2020] [Indexed: 12/12/2022]
Affiliation(s)
- Ina Østrøm
- Departamento de Química Universidade Federal de Santa Catarina Campus Universitário Trindade, CP 476 Florianópolis SC, 88040-900 Brazil
| | - Alexandre O. Ortolan
- Departamento de Química Universidade Federal de Santa Catarina Campus Universitário Trindade, CP 476 Florianópolis SC, 88040-900 Brazil
| | - Giovanni F. Caramori
- Departamento de Química Universidade Federal de Santa Catarina Campus Universitário Trindade, CP 476 Florianópolis SC, 88040-900 Brazil
| | - Mark Mascal
- Department of Chemistry University of California Davis 1 Shields Avenue Davis CA 95616 USA
| | - Alvaro Muñoz‐Castro
- Laboratorio de Química Inorgánica y Materiales Moleculares, Facultad de Ingeniería Universidad Autonoma de Chile Llano Subercaseaux 2801 San Miguel, Santiago Chile
| | - Renato L. T. Parreira
- Núcleo de Pesquisas em Ciências Exatas e Tecnológicas Universidade de Franca 14404-600 Franca, SP Brazil
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34
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Wang WW, Wang CW, Zheng JJ, Shang FL, Dang JS, Zhao X. Directional Diels-Alder cycloadditions of isoelectronic graphene and hexagonal boron nitride in oriented external electric fields: reaction axis rule vs. polarization axis rule. NANOSCALE 2020; 12:15364-15370. [PMID: 32656551 DOI: 10.1039/d0nr03443f] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The present study introduces the mechanisms for the oriented external electric field (OEEF)-participating cycloadditions of nanographene and the analogous hexagonal boron nitride (h-BN) nanoflakes. Despite the C-C and B-N pairs being isoelectronic, their different ionicities give rise to their distinct response to applied electric fields. For the nanographene models, the Diels-Alder addition obeyed the reaction axis rule and the activation barrier changed under an OEEF perpendicular to the carbon skeleton for enhanced/reduced intermolecular charge transfer, which provides a feasible strategy for the side-selective derivatization of graphene to obtain one-face-only adducts and Janus bifunctional products. By contrast, for the h-BN models, the variation of the activation barrier was pronounced when the electric field was aligned along the in-plane N-B bond rather than the well-accepted reaction axis. Electronic structure analyses indicated that, because of the opposite electron withdrawing/donating nature of the reacting sites of B/N, an OEEF along the N-B bond was capable of further enhancing the polarization via in-plane intramolecular charge transfer, resulting in a stabilized transition state and notable barrier reduction.
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Affiliation(s)
- Wei-Wei Wang
- State Key Laboratory for Strength and Vibration of Mechanical Structures, Department of Engineering Mechanics, School of Aerospace, Xi'an Jiaotong University, Xi'an 710049, China and Department of Chemistry, School of Science, Xi'an Jiaotong University, Xi'an 710049, China.
| | - Chang-Wei Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
| | - Jia-Jia Zheng
- Institute for Integrated Cell-Material Sciences, Kyoto University Institute for Advanced Study, Kyoto University, Yoshida Ushinomiya-cho, Sakyo-ku, Kyoto 606-8501, Japan
| | - Fu-Lin Shang
- State Key Laboratory for Strength and Vibration of Mechanical Structures, Department of Engineering Mechanics, School of Aerospace, Xi'an Jiaotong University, Xi'an 710049, China
| | - Jing-Shuang Dang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
| | - Xiang Zhao
- Department of Chemistry, School of Science, Xi'an Jiaotong University, Xi'an 710049, China.
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35
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Shaik S, Danovich D, Joy J, Wang Z, Stuyver T. Electric-Field Mediated Chemistry: Uncovering and Exploiting the Potential of (Oriented) Electric Fields to Exert Chemical Catalysis and Reaction Control. J Am Chem Soc 2020; 142:12551-12562. [PMID: 32551571 DOI: 10.1021/jacs.0c05128] [Citation(s) in RCA: 142] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
This Perspective discusses oriented external-electric-fields (OEEF), and other electric-field types, as "smart reagents", which enable in principle control over wide-ranging aspects of reactivity and structure. We discuss the potential of OEEFs to control nonredox reactions and impart rate-enhancement and selectivity. An OEEF along the "reaction axis", which is the direction whereby electronic reorganization converts reactants' to products' bonding, will accelerate reactions, control regioselectivity, induce spin-state selectivity, and elicit mechanistic crossovers. Simply flipping the direction of the OEEF will lead to inhibition. Orienting the OEEF off the reaction axis enables control over stereoselectivity, enantioselectivity, and product selectivity. For polar/polarizable reactants, the OEEF itself will act as tweezers, which orient the reactants and drive their reaction. OEEFs also affect bond-dissociation energies and dissociation modes (covalent vs ionic), as well as alteration of molecular geometries and supramolecular aggregation. The "key" to gaining access to this toolbox provided by OEEFs is microscopic control over the alignment between the molecule and the applied field. We discuss the elegant experimental methods which have been used to verify the theoretical predictions and describe various alternative EEF sources and prospects for upscaling OEEF catalysis in solvents. We also demonstrate the numerous ways in which the OEEF effects can be mimicked by use of (designed) local-electric fields (LEFs), i.e., by embedding charges or dipoles into molecules. LEFs and OEEFs are shown to be equivalent and to obey the same ground rules. Outcomes are exemplified for Diels-Alder cycloadditions, oxidative addition of bonds by transition-metal complexes, H-abstractions by oxo-metal species, ionic cleavage of halogen bonds, methane activation, etc.
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Affiliation(s)
- Sason Shaik
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - David Danovich
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - Jyothish Joy
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - Zhanfeng Wang
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - Thijs Stuyver
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel.,Algemene Chemie, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
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36
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Rather IA, Wagay SA, Ali R. Emergence of anion-π interactions: The land of opportunity in supramolecular chemistry and beyond. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2020.213327] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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37
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Dutta Dubey K, Stuyver T, Kalita S, Shaik S. Solvent Organization and Rate Regulation of a Menshutkin Reaction by Oriented External Electric Fields are Revealed by Combined MD and QM/MM Calculations. J Am Chem Soc 2020; 142:9955-9965. [PMID: 32369357 PMCID: PMC7304904 DOI: 10.1021/jacs.9b13029] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Indexed: 01/01/2023]
Abstract
When and how do external electric fields (EEFs) lead to catalysis in the presence of a (polar or nonpolar) solvent? This is the question that is addressed here using a combination of molecular dynamics (MD) simulations, quantum mechanical/molecular mechanical calculations with EEF, and quantum mechanical/(local) electric field calculations. The paper focuses on a model reaction, the Menshutkin reaction between CH3I and pyridine in three solvents of varying polarity. Using MD simulations, we find that the EEF causes the solvent to undergo organization; the solvent molecules gradually align with the applied field as the field strength increases. The collective orientation of the solvent molecules modifies the electrostatic environment around the Menshutkin species and induces a global electric field pointing in the opposite direction of the applied EEF. The combination of these two entangled effects leads to partial or complete screening of the EEF, with the extent of screening being proportional to the polarity/polarizability of the solvent. Nevertheless, we find that catalysis of the Menshutkin reaction inevitably emerges once the EEF exceeds the opposing field of the organizing solvent, i.e., once polarization of the Menshutkin complex is observed to set in. Overall, our analysis provides a lucid and pictorial interpretation of the behavior of solutions in the presence of EEFs and indicates that EEF-mediated catalysis should, in principle, be feasible in bulk setups, especially for nonpolar and mildly polar solvents. By application of the charge-transfer paradigm, it is shown that the emergence of OEEF catalysis in solution can be generalized to other reactions as well.
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Affiliation(s)
- Kshatresh Dutta Dubey
- Department
of Chemistry & Center for Informatics, Shiv Nadar University, NH91 Tehsil Dadri, Greater Noida, Uttar Pradesh 201314, India
| | - Thijs Stuyver
- Institute
of Chemistry, Edmond J. Safra Campus at Givat Ram, The Hebrew University, Jerusalem 9190400, Israel
- Algemene
Chemie, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
| | - Surajit Kalita
- Department
of Chemistry & Center for Informatics, Shiv Nadar University, NH91 Tehsil Dadri, Greater Noida, Uttar Pradesh 201314, India
| | - Sason Shaik
- Institute
of Chemistry, Edmond J. Safra Campus at Givat Ram, The Hebrew University, Jerusalem 9190400, Israel
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38
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Ernst BG, Lao KU, Sullivan AG, DiStasio Jr. RA. Attracting Opposites: Promiscuous Ion−π Binding in the Nucleobases. J Phys Chem A 2020; 124:4128-4140. [DOI: 10.1021/acs.jpca.0c02766] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Brian G. Ernst
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Ka Un Lao
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Andrew G. Sullivan
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Robert A. DiStasio Jr.
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
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39
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Schweicher G, Garbay G, Jouclas R, Vibert F, Devaux F, Geerts YH. Molecular Semiconductors for Logic Operations: Dead-End or Bright Future? ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2020; 32:e1905909. [PMID: 31965662 DOI: 10.1002/adma.201905909] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 11/18/2019] [Indexed: 05/26/2023]
Abstract
The field of organic electronics has been prolific in the last couple of years, leading to the design and synthesis of several molecular semiconductors presenting a mobility in excess of 10 cm2 V-1 s-1 . However, it is also started to recently falter, as a result of doubtful mobility extractions and reduced industrial interest. This critical review addresses the community of chemists and materials scientists to share with it a critical analysis of the best performing molecular semiconductors and of the inherent charge transport physics that takes place in them. The goal is to inspire chemists and materials scientists and to give them hope that the field of molecular semiconductors for logic operations is not engaged into a dead end. To the contrary, it offers plenty of research opportunities in materials chemistry.
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Affiliation(s)
- Guillaume Schweicher
- Laboratoire de chimie des polymères, Faculté des Sciences, Université Libre de Bruxelles (ULB) Boulevard du Triomphe, Brussels, 1050, Belgium
- Optoelectronics Group, Cavendish Laboratory, University of Cambridge, JJ Thomson Avenue, Cambridge, CB3 0HE, UK
| | - Guillaume Garbay
- Laboratoire de chimie des polymères, Faculté des Sciences, Université Libre de Bruxelles (ULB) Boulevard du Triomphe, Brussels, 1050, Belgium
| | - Rémy Jouclas
- Laboratoire de chimie des polymères, Faculté des Sciences, Université Libre de Bruxelles (ULB) Boulevard du Triomphe, Brussels, 1050, Belgium
| | - François Vibert
- Laboratoire de chimie des polymères, Faculté des Sciences, Université Libre de Bruxelles (ULB) Boulevard du Triomphe, Brussels, 1050, Belgium
| | - Félix Devaux
- Laboratoire de chimie des polymères, Faculté des Sciences, Université Libre de Bruxelles (ULB) Boulevard du Triomphe, Brussels, 1050, Belgium
| | - Yves H Geerts
- Laboratoire de chimie des polymères, Faculté des Sciences, Université Libre de Bruxelles (ULB) Boulevard du Triomphe, Brussels, 1050, Belgium
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40
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Laconsay CJ, Tsui KY, Tantillo DJ. Tipping the balance: theoretical interrogation of divergent extended heterolytic fragmentations. Chem Sci 2020; 11:2231-2242. [PMID: 32190279 PMCID: PMC7059201 DOI: 10.1039/c9sc05161a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Accepted: 01/08/2020] [Indexed: 01/24/2023] Open
Abstract
Herein we interrogate a type of heterolytic fragmentation reaction called a 'divergent fragmentation' using density functional theory (DFT), natural bond orbital (NBO) analysis, ab initio molecular dynamics (AIMD), and external electric field (EEF) calculations. We demonstrate that substituents, electrostatic environment and non-statistical dynamic effects all influence product selectivity in reactions that involve divergent fragmentation pathways. Direct dynamics simulations reveal an unexpected post-transition state bifurcation (PTSB), and EEF calculations suggest that some transition states for divergent pathways can, in principle, be selectively stabilized if an electric field of the correct magnitude is oriented appropriately.
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Affiliation(s)
- Croix J Laconsay
- Department of Chemistry , University of California , Davis , CA 95616 , USA .
| | - Ka Yi Tsui
- Department of Chemistry , University of California , Davis , CA 95616 , USA .
| | - Dean J Tantillo
- Department of Chemistry , University of California , Davis , CA 95616 , USA .
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41
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Paul M, Pathak RK, Pananghat B. Rotatory Response of Molecular Electron Momentum Densities in Linear, Homogeneous Weak Electric Fields: A Topographical Analysis. J Phys Chem A 2020; 124:943-954. [PMID: 31877045 DOI: 10.1021/acs.jpca.9b11356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
One-electron properties for molecules such as electron density, electrostatic potential (ESP), and electron momentum density (EMD) are experimentally tractable quantities, useful in understanding chemical characteristics. In this work, effects of a uniform homogeneous external electric field on some characteristic one-electron properties of simple molecules are analyzed. EMDs and ESPs were used to understand the response of water, hydrogen fluoride, carbon monoxide, chloroacetylene, and ammonia in an electric field. Remarkably, the EMD maxima for these molecules get rotated as the electric field strength is varied. A greater order of change in EMD than in ESP with increasing electric field strength brings out the sensitivity of the EMDs, especially for the valence electronic region, which in the momentum space is mapped onto the vicinity of its origin. The eigenvectors of the EMD Hessian maxima at the momentum-space origin are seen to rotate as a function of increasing field strength, with the extra angular momentum imparted by the field manifesting itself as reconfiguration of the EMD distribution. In the presence of the field, valence states may couple with higher electronic states, leading to a mixing of the states resulting in avoided crossings as a function of the field strength. The avoided crossings legitimately estimate maximal field strength limits for the calculation, prior to ionization.
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Affiliation(s)
- Mishu Paul
- Department of Chemical Sciences , Indian Institute of Science Education and Research (IISER) Mohali , Knowledge City, S. A. S. Nagar , Mohali , Punjab 140306 , India
| | - Rajeev K Pathak
- Department of Physics , Savitribai Phule Pune University (SPPU) , Pune 411007 , India
| | - Balanarayan Pananghat
- Department of Chemical Sciences , Indian Institute of Science Education and Research (IISER) Mohali , Knowledge City, S. A. S. Nagar , Mohali , Punjab 140306 , India
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42
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Joy J, Stuyver T, Shaik S. Oriented External Electric Fields and Ionic Additives Elicit Catalysis and Mechanistic Crossover in Oxidative Addition Reactions. J Am Chem Soc 2020; 142:3836-3850. [DOI: 10.1021/jacs.9b11507] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Jyothish Joy
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Thijs Stuyver
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
- Algemene Chemie, Vrije Universiteit Brussel, Pleinlaan 2, Brussels 1050, Belgium
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
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43
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44
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He CQ, Lam CC, Yu P, Song Z, Chen M, Lam YH, Chen S, Houk KN. Catalytic Effects of Ammonium and Sulfonium Salts and External Electric Fields on Aza-Diels–Alder Reactions. J Org Chem 2019; 85:2618-2625. [DOI: 10.1021/acs.joc.9b03446] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Cyndi Qixin He
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Ching Ching Lam
- Department of Chemistry, Imperial College London, London SW7 2AZ, U.K
| | - Peiyuan Yu
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Zhihui Song
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, United States
| | - Maggie Chen
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Yu-hong Lam
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Shuming Chen
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - K. N. Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
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45
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Blyth MT, Noble BB, Russell IC, Coote ML. Oriented Internal Electrostatic Fields Cooperatively Promote Ground- and Excited-State Reactivity: A Case Study in Photochemical CO2 Capture. J Am Chem Soc 2019; 142:606-613. [DOI: 10.1021/jacs.9b12186] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mitchell T. Blyth
- ARC Centre of Excellence for Electromaterials Science, Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory 2601, Australia
| | - Benjamin B. Noble
- ARC Centre of Excellence for Electromaterials Science, Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory 2601, Australia
| | - Isabella C. Russell
- ARC Centre of Excellence for Electromaterials Science, Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory 2601, Australia
| | - Michelle L. Coote
- ARC Centre of Excellence for Electromaterials Science, Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory 2601, Australia
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46
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Chen L, Liu S, Xu Z, Yang X. Electrically Tunable Electron Transfer and Binding Interaction between Hydrated Ions and Graphene Oxide. J Phys Chem Lett 2019; 10:5735-5741. [PMID: 31508964 DOI: 10.1021/acs.jpclett.9b02074] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Density functional theory simulations were carried out to study the binding interaction between hydrated Na+/Cl- and graphene oxide (GO) under electric fields. External electric fields can modify the binding interactions of the hydrated ions with GO. The field-dependent binding energy is mainly controlled by the orbital interaction driven by the field-dependent electron transfer, in which miscellaneous electron-transfer routes in the interfaces between hydrated ions and GO surface were disclosed. The electric field is able to influence the electron-transfer degree for each route, thereby creating various electron acceptor-donor coupling interactions. Furthermore, we preliminarily explored the effect of the electric field on the interlayer structure of bilayer GO with NaCl and water confined inside. Electric fields can enlarge the interlayer spacing through tuning of the hydrated ion-GO interactions. Our simulations present a new understanding of hydrated ion-GO interactions in the presence of an electric field, which is expected to be valuable in the electrical modulation of GO nanomaterials.
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47
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Savastano M, García-Gallarín C, López de la Torre MD, Bazzicalupi C, Bianchi A, Melguizo M. Anion-π and lone pair-π interactions with s-tetrazine-based ligands. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.06.016] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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48
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Hsu WL, Lee MJ, Lee W. Electric-field-assisted signal amplification for label-free liquid-crystal-based detection of biomolecules. BIOMEDICAL OPTICS EXPRESS 2019; 10:4987-4998. [PMID: 31646024 PMCID: PMC6788601 DOI: 10.1364/boe.10.004987] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Revised: 08/29/2019] [Accepted: 08/29/2019] [Indexed: 05/21/2023]
Abstract
The fundamental principle of liquid-crystal (LC)-based biosensing is the sensitive response of LC orientation to external stimuli. Biomolecules such as proteins or DNAs immobilized on the glass substrate of a LC cell are detected through disrupting the LC alignment and, in turn, altering the birefringence, resulting in changes in the optical texture that can be readily observed under a polarizing optical microscope. With an additional weak electric field across a sandwiched LC cell, we demonstrate in this study a novel label-free biodetection technique with amplified signal and improved detection limit. By applying the binarization analysis as the quantitative approach, the increase in the light leakage area in the optical texture of LCs with increasing amount of biomolecules can be quantitated with a bright-area-ratio (BAR)-versus-concentration curve. The reported biosensing technique exploits both the optical and electrical properties of LCs and is potentially applicable to other LC-based rapid screening and bioassays.
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Affiliation(s)
- Wei-Liang Hsu
- Institute of Imaging and Biomedical Photonics, College of Photonics, National Chiao Tung University, Guiren Dist., Tainan 71150, Taiwan
| | - Mon-Juan Lee
- Department of Bioscience Technology, Chang Jung Christian University, Guiren Dist., Tainan 71101, Taiwan
- Department of Medical Sciences Industry, Chang Jung Christian University, Guiren Dist., Tainan 71101, Taiwan
| | - Wei Lee
- Institute of Imaging and Biomedical Photonics, College of Photonics, National Chiao Tung University, Guiren Dist., Tainan 71150, Taiwan
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Stuyver T, Huang J, Mallick D, Danovich D, Shaik S. TITAN: A Code for Modeling and Generating Electric Fields—Features and Applications to Enzymatic Reactivity. J Comput Chem 2019; 41:74-82. [DOI: 10.1002/jcc.26072] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 08/22/2019] [Accepted: 08/31/2019] [Indexed: 12/24/2022]
Affiliation(s)
- Thijs Stuyver
- Institute of Chemistry, The Lise Meitner‐Minerva Center for Computational Quantum ChemistryHebrew University of Jerusalem Givat Ram Campus Jerusalem 91904 Israel
- Algemene ChemieVrije Universiteit Brussel Pleinlaan 2 1050 Brussels Belgium
| | - Jing Huang
- Institute of Chemistry, The Lise Meitner‐Minerva Center for Computational Quantum ChemistryHebrew University of Jerusalem Givat Ram Campus Jerusalem 91904 Israel
- College of Environmental and Biological EngineeringPutian University Putian Fujian 351100 China
| | - Dibyendu Mallick
- Institute of Chemistry, The Lise Meitner‐Minerva Center for Computational Quantum ChemistryHebrew University of Jerusalem Givat Ram Campus Jerusalem 91904 Israel
- Department of ChemistryPresidency University Kolkata 700073 India
| | - David Danovich
- Institute of Chemistry, The Lise Meitner‐Minerva Center for Computational Quantum ChemistryHebrew University of Jerusalem Givat Ram Campus Jerusalem 91904 Israel
| | - Sason Shaik
- Institute of Chemistry, The Lise Meitner‐Minerva Center for Computational Quantum ChemistryHebrew University of Jerusalem Givat Ram Campus Jerusalem 91904 Israel
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50
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Bornhof A, Vázquez‐Nakagawa M, Rodríguez‐Pérez L, Ángeles Herranz M, Sakai N, Martín N, Matile S, López‐Andarias J. Anion–π Catalysis on Carbon Nanotubes. Angew Chem Int Ed Engl 2019; 58:16097-16100. [DOI: 10.1002/anie.201909540] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Indexed: 12/11/2022]
Affiliation(s)
- Anna‐Bea Bornhof
- Department of Organic Chemistry University of Geneva 1211 Geneva Switzerland
| | - Mikiko Vázquez‐Nakagawa
- Department of Organic Chemistry Faculty of Chemistry Universidad Complutense de Madrid 28040 Madrid Spain
| | - Laura Rodríguez‐Pérez
- Department of Organic Chemistry Faculty of Chemistry Universidad Complutense de Madrid 28040 Madrid Spain
| | - María Ángeles Herranz
- Department of Organic Chemistry Faculty of Chemistry Universidad Complutense de Madrid 28040 Madrid Spain
| | - Naomi Sakai
- Department of Organic Chemistry University of Geneva 1211 Geneva Switzerland
| | - Nazario Martín
- Department of Organic Chemistry Faculty of Chemistry Universidad Complutense de Madrid 28040 Madrid Spain
- IMDEA-Nanociencia c/ Faraday 9, Campus Cantoblanco 28049 Madrid Spain
| | - Stefan Matile
- Department of Organic Chemistry University of Geneva 1211 Geneva Switzerland
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