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Wu Q, Yu J, Zhang M, Xiong Y, Zhu L, Wei B, Wu T, Du Y. Serum lipidomic profiling for liver cancer screening using surface-assisted laser desorption ionization MS and machine learning. Talanta 2024; 268:125371. [PMID: 37931569 DOI: 10.1016/j.talanta.2023.125371] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 10/26/2023] [Accepted: 10/28/2023] [Indexed: 11/08/2023]
Abstract
The liver is a major organ in metabolism, and alterations in serum lipids are associated with liver disorders. Here, a rapid, easy, and reliable screening technique based on lipidomic profiling was developed using machine learning and surface-assisted laser desorption ionization mass spectrometry (SALDI MS) for liver cancer diagnosis. A graphitized carbon matrix (GCM) was created for serum lipid profiling in SALDI MS and demonstrated a better performance for neutral lipids analysis than conventional organic matrices. The fingerprint of serum lipids, including triacylglycerols (TGs), diacylglycerols (DGs), cholesteryl esters (CEs), glycerophospholipids (GPs), and other components, could be directly obtained by GCM-assisted LDI MS without extraction. Five machine learning methods were applied to distinguish liver cancer (LC) patients from healthy controls (HC) and chronic hepatitis B (CHB) patients. The best diagnostic performance was attained by linear discriminant analysis (LDA), which has a confusion matrix accuracy of 98.3 %. The receiver operating characteristic (ROC) curve for liver cancer exhibited an area under the curve (AUC) of 0.99, indicating a high degree of prediction accuracy. One-way ANOVA analysis revealed that numerous TGs were down-regulated in LC group. The results demonstrated the viability of GCM-assisted LDI MS as a valuable diagnostic tool for liver cancer.
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Affiliation(s)
- Qiong Wu
- School of Chemistry and Molecular Engineering and Shanghai Key Laboratory of Functional Materials Chemistry, and Research Centre of Analysis and Test, East China University of Science and Technology, Shanghai, 200237, China
| | - Jing Yu
- School of Chemistry and Molecular Engineering and Shanghai Key Laboratory of Functional Materials Chemistry, and Research Centre of Analysis and Test, East China University of Science and Technology, Shanghai, 200237, China
| | - Mingjin Zhang
- School of Chemistry and Chemical Engineering, Qinghai Normal University, Xining, Qinghai, 810016, China
| | - Yinran Xiong
- School of Chemistry and Molecular Engineering and Shanghai Key Laboratory of Functional Materials Chemistry, and Research Centre of Analysis and Test, East China University of Science and Technology, Shanghai, 200237, China
| | - Lijia Zhu
- School of Chemistry and Molecular Engineering and Shanghai Key Laboratory of Functional Materials Chemistry, and Research Centre of Analysis and Test, East China University of Science and Technology, Shanghai, 200237, China
| | - Bo Wei
- Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, 200003, China
| | - Ting Wu
- School of Chemistry and Molecular Engineering and Shanghai Key Laboratory of Functional Materials Chemistry, and Research Centre of Analysis and Test, East China University of Science and Technology, Shanghai, 200237, China.
| | - Yiping Du
- School of Chemistry and Molecular Engineering and Shanghai Key Laboratory of Functional Materials Chemistry, and Research Centre of Analysis and Test, East China University of Science and Technology, Shanghai, 200237, China.
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2019-2020. MASS SPECTROMETRY REVIEWS 2022:e21806. [PMID: 36468275 DOI: 10.1002/mas.21806] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
This review is the tenth update of the original article published in 1999 on the application of matrix-assisted laser desorption/ionization (MALDI) mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2020. Also included are papers that describe methods appropriate to analysis by MALDI, such as sample preparation techniques, even though the ionization method is not MALDI. The review is basically divided into three sections: (1) general aspects such as theory of the MALDI process, matrices, derivatization, MALDI imaging, fragmentation, quantification and the use of arrays. (2) Applications to various structural types such as oligo- and polysaccharides, glycoproteins, glycolipids, glycosides and biopharmaceuticals, and (3) other areas such as medicine, industrial processes and glycan synthesis where MALDI is extensively used. Much of the material relating to applications is presented in tabular form. The reported work shows increasing use of incorporation of new techniques such as ion mobility and the enormous impact that MALDI imaging is having. MALDI, although invented nearly 40 years ago is still an ideal technique for carbohydrate analysis and advancements in the technique and range of applications show little sign of diminishing.
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Affiliation(s)
- David J Harvey
- Nuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, UK
- Department of Chemistry, University of Oxford, Oxford, Oxfordshire, United Kingdom
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Liu Z, Zhang P, Pyttlik A, Kraus T, Volmer DA. Influence of core size and capping ligand of gold nanoparticles on the desorption/ionization efficiency of small biomolecules in AP‐SALDI‐MS. ACTA ACUST UNITED AC 2020. [DOI: 10.1002/ansa.202000002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Zhen Liu
- Institute of Bioanalytical Chemistry Saarland University Saarbrücken Germany
| | - Peng Zhang
- School of Materials Science and Engineering Sun Yat‐sen University Guangzhou China
| | - Andrea Pyttlik
- INM‐Leibniz Institute for New Materials Saarbrücken Germany
| | - Tobias Kraus
- INM‐Leibniz Institute for New Materials Saarbrücken Germany
- Institute of Colloid and Interface Chemistry Saarland University Saarbrücken Germany
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