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Hejri S, Salimi A, Malboobi MA, Fatehi F. Comparative proteome analyses of rhizomania resistant transgenic sugar beets based on RNA silencing mechanism. GM CROPS & FOOD 2021; 12:419-433. [PMID: 34494497 PMCID: PMC8820250 DOI: 10.1080/21645698.2021.1954467] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Rhizomania is an economically important disease of sugar beet, which is caused by Beet necrotic yellow vein virus (BNYVV). As previously shown, RNA silencing mechanism effectively inhibit the viral propagation in transgenic sugar beet plants. To investigate possible proteomic changes induced by gene insertion and/or RNA silencing mechanism, the root protein profiles of wild type sugar beet genotype 9597, as a control, and transgenic events named 6018-T3:S6-44 (S6) and 219-T3:S3-13.2 (S3) were compared by two-dimensional gel electrophoresis. The accumulation levels of 25 and 24 proteins were differentially regulated in S3 and S6 plants, respectively. The accumulation of 15 spots were increased or decreased more than 2-fold. Additionally, 10 spots repressed or induced in both, while seven spots showed variable results in two events. All the differentially expressed spots were analyzed by MALDI-TOF-TOF mass spectrometry. The functional analysis of differentially accumulated proteins showed that most of them are related to the metabolism and defense/stress response. None of these recognized proteins were allergens or toxic proteins except for a spot identified as phenylcoumaran benzylic ether reductase, Pyrc5, which was decreased in the genetically modified S6 plant. These data are in favor of substantial equivalence of the transgenic plants in comparison to their related wild type cultivar since the proteomic profile of sugar beet root was not remarkably affected by gene transfer and activation RNA silencing mechanism.
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Affiliation(s)
- Sara Hejri
- Department of Molecular Biotechnology, Institute of Agricultural Biotechnology, National Institute of Genetic Engineering and Biotechnology, Tehran, Iran.,Department of Plant Biology, Faculty of Biosciences, Kharazmi University, Tehran, Iran
| | - Azam Salimi
- Department of Plant Biology, Faculty of Biosciences, Kharazmi University, Tehran, Iran
| | - Mohammad Ali Malboobi
- Department of Molecular Biotechnology, Institute of Agricultural Biotechnology, National Institute of Genetic Engineering and Biotechnology, Tehran, Iran
| | - Foad Fatehi
- Department of Agriculture, Payame Noor University, Tehran, Iran
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Yerzhebayeva R, Abekova A, Konysbekov K, Bastaubayeva S, Kabdrakhmanova A, Absattarova A, Shavrukov Y. Two sugar beet chitinase genes, BvSP2 and BvSE2, analysed with SNP Amplifluor-like markers, are highly expressed after Fusarium root rot inoculations and field susceptibility trial. PeerJ 2018; 6:e5127. [PMID: 29967753 PMCID: PMC6026450 DOI: 10.7717/peerj.5127] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Accepted: 06/08/2018] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND The pathogens from Fusarium species can cause Fusarium root rot (RR) and other diseases in plant species including sugar beet (Beta vulgaris L.), and they have a strong negative impact on sugar beet yield and quality. METHODS A total of 22 sugar beet breeding lines were evaluated for the symptoms of RR after inoculation with Fusarium oxysporum Sch., isolate No. 5, and growth in a field trial. Two candidate genes for RR resistance, BvSP2 and BvSE2, encoding chitinases Class IV and III, respectively, were previously identified in sugar beet, and used for genotyping using modern Amplifluor-like single nucleotide polymorphism (SNP) genotyping approach. The qPCR expression analysis was used to verify responses of the candidate genes for RR infections. RESULTS A strong association of two SNP markers for BvSP2 and BvSE2 with resistance to RR in sugar beet was found in our study. Very high BvSP2 expression (100-fold compared to Controls) was observed in three RR resistant accessions (2182, 2236 and KWS2320) 14 days after inoculation which returned to the control level on Day 18. RR sensitive breeding line 2210 showed a delay in mRNA level, reaching maximal expression of BvSP2 18 days after inoculation. The gene BvSE2, showed a strong expression level in leaf samples from the infected field trial only in the breeding line 2236, which showed symptoms of RR, and this may be a response to other strains of F. oxysporum.
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Affiliation(s)
- Raushan Yerzhebayeva
- Kazakh Research Institute of Agriculture and Plant Growing, Almalybak, Almaty District, Kazakhstan
| | - Alfiya Abekova
- Kazakh Research Institute of Agriculture and Plant Growing, Almalybak, Almaty District, Kazakhstan
| | - Kerimkul Konysbekov
- Taldykorgan Branch, Kazakh Research Institute of Agriculture and Plant Growing, Taldykorgan, Almaty District, Kazakhstan
| | - Sholpan Bastaubayeva
- Kazakh Research Institute of Agriculture and Plant Growing, Almalybak, Almaty District, Kazakhstan
| | - Aynur Kabdrakhmanova
- I. Zhansugurov Zhetysu State University, Taldykorgan, Almaty District, Kazakhstan
| | | | - Yuri Shavrukov
- College of Science and Engineering, School of Biological Sciences, Flinders University of South Australia, Bedford Park, SA, Australia
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Webb KM, Broccardo CJ, Prenni JE, Wintermantel WM. Proteomic Profiling of Sugar Beet ( Beta vulgaris) Leaves during Rhizomania Compatible Interactions. Proteomes 2014; 2:208-223. [PMID: 28250378 PMCID: PMC5302737 DOI: 10.3390/proteomes2020208] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2014] [Revised: 03/15/2014] [Accepted: 03/27/2014] [Indexed: 11/16/2022] Open
Abstract
Rhizomania, caused by Beet necrotic yellow vein virus (BNYVV), severely impacts sugar beet (Beta vulgaris) production throughout the world, and is widely prevalent in most production regions. Initial efforts to characterize proteome changes focused primarily on identifying putative host factors that elicit resistant interactions with BNYVV, but as resistance breaking strains become more prevalent, effective disease control strategies will require the application of novel methods based on better understanding of disease susceptibility and symptom development. Herein, proteomic profiling was conducted on susceptible sugar beet, infected with two strains of BNYVV, to clarify the types of proteins prevalent during compatible virus-host plant interactions. Total protein was extracted from sugar beet leaf tissue infected with BNYVV, quantified, and analyzed by mass spectrometry. A total of 203 proteins were confidently identified, with a predominance of proteins associated with photosynthesis and energy, metabolism, and response to stimulus. Many proteins identified in this study are typically associated with systemic acquired resistance and general plant defense responses. These results expand on relatively limited proteomic data available for sugar beet and provide the ground work for additional studies focused on understanding the interaction of BNYVV with sugar beet.
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Affiliation(s)
- Kimberly M Webb
- USDA-ARS-SBRU, Crops Research Laboratory, 1701 Centre Ave., Fort Collins, CO 80526, USA.
| | - Carolyn J Broccardo
- Proteomics and Metabolomics Facility, Colorado State University, C130 Microbiology, 2021 Campus Delivery, Fort Collins, CO 80523, USA.
| | - Jessica E Prenni
- Proteomics and Metabolomics Facility, Colorado State University, C130 Microbiology, 2021 Campus Delivery, Fort Collins, CO 80523, USA.
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Luzzatto-Knaan T, Kerem Z, Lipsky A, Yedidia I. A systemic response of geophytes is demonstrated by patterns of protein expression and the accumulation of signal molecules in Zantedeschia aethiopica. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2013; 71:218-225. [PMID: 23968930 DOI: 10.1016/j.plaphy.2013.07.014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Accepted: 07/25/2013] [Indexed: 06/02/2023]
Abstract
In geophyte plants, such as Zantedeschia, individual leaves are directly connected to a specialized underground storage organ (rhizome/tuber), raising a question regarding systemic resistance as a mechanism of defense. A systemic response requires a transfer of a signal through the storage organ which has been evolutionary adapted to store food, minerals and moisture for seasonal growth and development. We have characterized the nature of induced defense responses in Zantedeschia aethiopica, a rhizomatous (tuber-like) ornamental plant by the application of local elicitation using two well-known defense elicitors, benzo-(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester (BTH) and methyl jasmonate (MJ). The system consisted leaves in which local responses were directly induced, and systemically responsive leaves in which defense molecules were detected, demonstrating a transported vascular signal. Using anatomical and biochemical tools and local elicitation with MJ, the systemic nature of the response was verified in adjacent leaves by unique protein expression patterns; similarly polyphenol oxidase (PPO) activity was found to increase systemically in all parts of the locally induced plants, including the rhizome, and adjacent leaves; finally, significant accumulation of defense signal molecules such as salicylic and jasmonic acids was recorded in local and systemic leaves following elicitation with BTH. Anatomical sections through the leaves and the rhizome revealed that to be transferred from one leaf to its neighbor, signal molecules must have been transferred through the storage organ. The collected data strongly support our hypothesis that defense signals may and are transferred through the storage organ in monocot geophytes.
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Affiliation(s)
- Tal Luzzatto-Knaan
- Institute of Biochemistry, Food Science and Nutrition, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, P.O. Box 12, Rehovot 76100, Israel; Department of Ornamental Horticulture, ARO, The Volcani Center, Derech Hamacabim 20, P.O. Box 6, Bet-Dagan 50250, Israel
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Fang X, Jost R, Finnegan PM, Barbetti MJ. Comparative Proteome Analysis of the Strawberry-Fusarium oxysporum f. sp. fragariae Pathosystem Reveals Early Activation of Defense Responses as a Crucial Determinant of Host Resistance. J Proteome Res 2013; 12:1772-88. [DOI: 10.1021/pr301117a] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Xiangling Fang
- School of Plant Biology, Faculty
of Science, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Ricarda Jost
- School of Plant Biology, Faculty
of Science, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Patrick M. Finnegan
- School of Plant Biology, Faculty
of Science, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- The UWA Institute of Agriculture,
Faculty of Science, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Martin J. Barbetti
- School of Plant Biology, Faculty
of Science, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- The UWA Institute of Agriculture,
Faculty of Science, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
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Lisón P, Tárraga S, López-Gresa P, Saurí A, Torres C, Campos L, Bellés JM, Conejero V, Rodrigo I. A noncoding plant pathogen provokes both transcriptional and posttranscriptional alterations in tomato. Proteomics 2013; 13:833-44. [PMID: 23303650 DOI: 10.1002/pmic.201200286] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2012] [Revised: 11/27/2012] [Accepted: 12/06/2012] [Indexed: 02/04/2023]
Abstract
Viroids are single-stranded, circular, noncoding RNAs that infect plants, causing devastating diseases. In this work, we employed 2D DIGE, followed by MS identification, to analyze the response of tomato plants infected by Citrus exocortis viroid (CEVd). Among the differentially expressed proteins detected, 45 were successfully identified and classified into different functional categories. Validation results by RT-PCR allowed us to classify the proteins into two expression groups. First group included genes with changes at the transcriptional level upon CEVd infection, such as an endochitinase, a β-glucanase, and pathogenesis-related proteins, PR10 and P69G. All these defense proteins were also induced by gentisic acid, a pathogen-induced signal in compatible interactions. The second group of proteins showed no changes at the transcriptional level and included several ribosomal proteins and translation factors, such as the elongation factors 1 and 2 and the translation initiation factor 5-alpha. These results were validated by 2D Western blot, and possible PTMs caused by CEVd infection were detected. Moreover, an interaction between eukaryotic elongation factor 1 and CEVd was observed by 2D Northwestern. The present study provides new protein-related information on the mechanisms of plant resistance to pathogens.
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Affiliation(s)
- Purificación Lisón
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politècnica de València (UPV), Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
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Palomares-Rius JE, Castillo P, Navas-Cortés JA, Jiménez-Díaz RM, Tena M. A proteomic study of in-root interactions between chickpea pathogens: The root-knot nematode Meloidogyne artiellia and the soil-borne fungus Fusarium oxysporum f. sp. ciceris race 5. J Proteomics 2011; 74:2034-51. [DOI: 10.1016/j.jprot.2011.05.026] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2011] [Revised: 04/29/2011] [Accepted: 05/12/2011] [Indexed: 10/18/2022]
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Proteomics of plant pathogenic fungi. J Biomed Biotechnol 2010; 2010:932527. [PMID: 20589070 PMCID: PMC2878683 DOI: 10.1155/2010/932527] [Citation(s) in RCA: 100] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2009] [Revised: 02/03/2010] [Accepted: 03/01/2010] [Indexed: 12/15/2022] Open
Abstract
Plant pathogenic fungi cause important yield losses in crops. In order to develop efficient and environmental friendly crop protection strategies, molecular studies of the fungal biological cycle, virulence factors, and interaction with its host are necessary. For that reason, several approaches have been performed using both classical genetic, cell biology, and biochemistry and the modern, holistic, and high-throughput, omic techniques. This work briefly overviews the tools available for studying Plant Pathogenic Fungi and is amply focused on MS-based Proteomics analysis, based on original papers published up to December 2009. At a methodological level, different steps in a proteomic workflow experiment are discussed. Separate sections are devoted to fungal descriptive (intracellular, subcellular, extracellular) and differential expression proteomics and interactomics. From the work published we can conclude that Proteomics, in combination with other techniques, constitutes a powerful tool for providing important information about pathogenicity and virulence factors, thus opening up new possibilities for crop disease diagnosis and crop protection.
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Jorrín-Novo JV, Maldonado AM, Echevarría-Zomeño S, Valledor L, Castillejo MA, Curto M, Valero J, Sghaier B, Donoso G, Redondo I. Plant proteomics update (2007–2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge. J Proteomics 2009; 72:285-314. [DOI: 10.1016/j.jprot.2009.01.026] [Citation(s) in RCA: 174] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Silvar C, Merino F, Díaz J. Resistance in pepper plants induced by Fusarium oxysporum f. sp. lycopersici involves different defence-related genes. PLANT BIOLOGY (STUTTGART, GERMANY) 2009; 11:68-74. [PMID: 19121115 DOI: 10.1111/j.1438-8677.2008.00100.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Inoculation with Fusarium oxysporum f. sp. lycopersici (FOL) protects pepper plants from subsequent infection with Phytophthora capsici. In the present paper, the level of local and systemic protection achieved by plants induced with FOL was evaluated by quantifying the pathogen biomass and using real-time PCR. Differences in the amount of pathogen were found in stems and roots between FOL-treated and untreated plants, while pathogen biomass could not be detected in leaves of induced plants. Five defence-related genes coding for a PR-1 protein, a beta-1,3-glucanase, a chitinase, a peroxidase and a sesquiterpene cyclase were up-regulated 48 h after treatment in all the tissues studied, and maximal mRNAs levels were found in leaves.
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Affiliation(s)
- C Silvar
- Dpto de Bioloxía Animal, Bioloxía Vexetal e Ecoloxía, Universidade da Coruña, Campus da Zapateira, A Coruña, Spain
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