1
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Yang JS, Kim SG. Catalytic enantioselective [3+2] and [4+2]-annulation of cyclic N-sulfonyl ketimines with γ- or δ-hydroxy-α,β-unsaturated ketones. Chem Commun (Camb) 2024; 60:7954-7957. [PMID: 38988235 DOI: 10.1039/d4cc02734e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/12/2024]
Abstract
A highly efficient asymmetric [3+2] and [4+2]-annulation of cyclic N-sulfonyl ketimines with γ- or δ-hydroxy-α,β-unsaturated ketones has been developed. This innovative reaction employs an organocatalytic approach, utilizing a hydrogen-bonding bifunctional squaramide-based catalyst. The process enables precise synthesis of chiral polyheterotricyclic oxazolidines and 1,3-oxazinane derivatives, revealing intricate structures with incorporated chiral quaternary centers. Remarkably, this method delivers high yields and exceptional enantioselectivities and diastereoselectivities, achieving up to 99% yield, >20 : 1 dr, and >99% ee.
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Affiliation(s)
- Ji Seon Yang
- Department of Chemistry, College of Natural Science, Kyonggi University, 154-42, Gwanggyosan-ro, Yeongtong-gu, Suwon, 16227, Republic of Korea.
| | - Sung-Gon Kim
- Department of Chemistry, College of Natural Science, Kyonggi University, 154-42, Gwanggyosan-ro, Yeongtong-gu, Suwon, 16227, Republic of Korea.
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2
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Nayak MK, Chakraborty S, Mohanty A, Roy S. SnCl 2-catalyzed multicomponent coupling: synthesis of 1,3-oxazolidine derivatives using paraformaldehyde as a C1 feedstock. Org Biomol Chem 2024; 22:5768-5775. [PMID: 38920417 DOI: 10.1039/d4ob00791c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
SnCl2 catalyzed the three-component coupling of aniline, epoxide, and paraformaldehyde, resulting in the synthesis of 1,3-oxazolidine derivatives. The reaction is simple and does not require any additives, bases, or oxidants, and proceeds at moderate temperature with good functional group tolerance. The scope of the utilization of paraformaldehyde as the methylene source was further extended to the synthesis of benzothiazole and 4,4'-methylenebis(N,N-dimethylaniline) using the same catalyst. A catalytic pathway was proposed based on the control experiments.
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Affiliation(s)
- Mukesh Kumar Nayak
- Organometallics & Catalysis Laboratory, School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Arugul, Jatani, Khurda 752050, Odisha, India.
| | - Swati Chakraborty
- Organometallics & Catalysis Laboratory, School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Arugul, Jatani, Khurda 752050, Odisha, India.
| | - Anuradha Mohanty
- Organometallics & Catalysis Laboratory, School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Arugul, Jatani, Khurda 752050, Odisha, India.
| | - Sujit Roy
- Organometallics & Catalysis Laboratory, School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Arugul, Jatani, Khurda 752050, Odisha, India.
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3
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Pal S, Das D, Bhunia S. p-Toluenesulfonic acid-promoted organic transformations for the generation of molecular complexity. Org Biomol Chem 2024; 22:1527-1579. [PMID: 38275082 DOI: 10.1039/d3ob01766d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2024]
Abstract
Since the beginning of this century, p-toluenesulfonic acid (p-TSA) catalysed organic transformations have been an active area of research for developing efficient synthetic methodologies. Often, catalysis using p-TSA is associated with many advantages, such as operational simplicity, high selectivity, excellent yields, and ease of product isolation, which make organic synthesis convenient and versatile. Notably, p-TSA is a non-toxic, commercially available, inexpensive solid organic compound that is soluble in water, alcohols, and other polar organic solvents. p-TSA is a strong acid compared to many protic or mineral acids and its high acidity helps activate different organic functional groups. p-TSA-promoted conversions are fast, have a high atom and pot economy, and feature a multiple bond-forming index. Therefore, the utilization of p-TSA enables the synthesis of many important structural scaffolds without any hazardous metals, making it desirable in numerous applications of sustainable and green chemistry. Recently, this emerging area of research has become one of the pillars of synthetic organic chemistry to synthesise biologically relevant, complex carbocycles and heterocycles. This study provides a comprehensive summary of methods, applications, and mechanistic insights into p-TSA-catalysed organic transformations, covering the literature reports that have appeared since 2012.
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Affiliation(s)
- Sanchari Pal
- Department of Chemistry, Triveni Devi Bhalotia College, Raniganj, India.
| | - Debjit Das
- Department of Chemistry, Triveni Devi Bhalotia College, Raniganj, India.
| | - Sabyasachi Bhunia
- Department of Chemistry, Central University of Jharkhand, Ranchi, Jharkhand, India.
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4
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Drabkin VD, Paczelt V, Eckhardt AK. Spectroscopic identification of interstellar relevant 2-iminoacetaldehyde. Chem Commun (Camb) 2023; 59:12715-12718. [PMID: 37814897 DOI: 10.1039/d3cc04192a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/11/2023]
Abstract
Imines play a fundamental role in organic synthesis and some of them have been detected in space. However, the simplest imines are spectroscopically not well-characterized. Herein we present the infrared and UV/Vis spectroscopic characterization of 2-iminoacetaldehyde using cryogenic matrix isolation techniques. After UV irradiation of 2-azidoacetaldehyde in solid argon at 3 K we identified two conformers of 2-iminoacetaldehyde, which can be photochemically interconverted. Deuterium labelling experiments and high level ab initio coupled cluster calculations at the CCSD(T)/CBS level of theory provide further evidence for the formation of 2-iminoacetaldehyde.
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Affiliation(s)
- Vladimir D Drabkin
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, Bochum 44801, Germany.
| | - Viktor Paczelt
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, Bochum 44801, Germany.
| | - André K Eckhardt
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, Bochum 44801, Germany.
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5
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Sun M, Chen J, Ding Z. Synthesis of Oxazolidines and Dihydroxazines via Cyclization of α-Aminated Ketones. J Org Chem 2023. [PMID: 37470361 DOI: 10.1021/acs.joc.3c00690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/21/2023]
Abstract
A new approach to oxazolidines and dihydroxazines was developed by regioselective cyclization of α-aminated ketones under transition metal-free conditions. Oxazolidine derivatives were generated in the presence of chloro benziodoxole and TFA, while dihydroxazines were formed without a hypervalent iodine reagent. The reaction was performed under room temperature and gave the products in good to excellent yields.
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Affiliation(s)
- Mingze Sun
- Jiangsu Key Laboratory of Drug Design and Optimization, Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, China
| | - Jingjing Chen
- Jiangsu Key Laboratory of Drug Design and Optimization, Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, China
| | - Zhenhua Ding
- Jiangsu Key Laboratory of Drug Design and Optimization, Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, China
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6
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Kim Y, Kim SY, Kim SG. Organocatalytic Asymmetric [3 + 2]-Annulations of γ-Sulfonamido/γ-Hydroxy-α,β-Unsaturated Ketones with Cyclic N-Sulfimines: Synthesis of Chiral Polyheterotricyclic Imidazolidines and Oxazolidines. J Org Chem 2023; 88:1113-1127. [PMID: 36580571 DOI: 10.1021/acs.joc.2c02634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The first organocatalytic asymmetric [3 + 2]-annulation of γ-sulfonamido-α,β-unsaturated ketones with cyclic N-sulfimines has been developed, and enantioenriched functionalized polyheterotricyclic imidazolidines were obtained in good yields and with excellent enantioselectivities. This approach was also extended to the asymmetric [3 + 2]-annulation of γ-hydroxy-α,β-unsaturated ketones, affording enantioenriched polyheterotricyclic oxazolidines. In addition, base-catalyzed [3 + 2]-annulations of γ-sulfonamido/γ-hydroxy-α,β-unsaturated ketones with cyclic N-sulfimines were re-investigated under mild reaction conditions for the synthesis of racemic polyheterotricyclic imidazolidines and oxazolidines with excellent diastereoselectivities.
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Affiliation(s)
- Yoseop Kim
- Department of Chemistry, College of Natural Science, Kyonggi University, 154-42 Gwanggyosan-ro, Yeongtong-gu, Suwon 16227, Republic of Korea
| | - Seung Yeon Kim
- Department of Chemistry, College of Natural Science, Kyonggi University, 154-42 Gwanggyosan-ro, Yeongtong-gu, Suwon 16227, Republic of Korea
| | - Sung-Gon Kim
- Department of Chemistry, College of Natural Science, Kyonggi University, 154-42 Gwanggyosan-ro, Yeongtong-gu, Suwon 16227, Republic of Korea
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7
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Pandey P, Chatterjee S, Berida T, Doerksen RJ, Roy S. Identification of potential non-nucleoside MraY inhibitors for tuberculosis chemotherapy using structure-based virtual screening. J Biomol Struct Dyn 2022; 40:4832-4849. [PMID: 33353500 PMCID: PMC9948644 DOI: 10.1080/07391102.2020.1862705] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 12/07/2020] [Indexed: 02/02/2023]
Abstract
The efforts to limit the spread of the tuberculosis epidemic have been challenged by the rise of drug-resistant strains of Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis. It is critical to discover new chemical scaffolds acting on novel or unexploited targets to beat this drug-resistant pathogen. MraY (phospho-MurNAc-pentapeptide translocase or translocase I) is an in vivo validated target for antibacterials-discovery. MraY is inhibited by nucleoside-based natural products that suffer from poor in vivo efficacy. The current study is focused on discovering novel chemical entities, particularly, non-nucleoside small molecules, as MraYMtb inhibitors possessing antituberculosis activity. In the absence of any reported X-ray crystal structures of MraYMtb, we used a homology model-based virtual screening approach combined with the ligand-based e-pharmacophore screening. We screened ∼12 million commercially available compounds from the ZINC15 database using GOLD software. The resulting hits were filtered using a 2-pronged screening method comprising e-pharmacophore hypotheses and docking against the MraYMtb homology model using Glide. Further clustering based on Glide scores and optimal binding interactions resulted in 15 in silico hits. We performed molecular dynamics (MD) simulations for the three best-ranking compounds and one other poorer-ranking compound, out of the 15 in silico hits, to analyze the interaction modes in detail. The MD simulations indicated stable interactions between the compounds and key residues in the MraY active site that are crucial for maintaining the enzymatic activity. These in silico hits could advance the antibacterial drug discovery campaign to find new MraY inhibitors for tuberculosis treatment.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Pankaj Pandey
- Department of BioMolecular Sciences, Division of Medicinal Chemistry, University of Mississippi, University, MS 38677, USA
- National Center for Natural Products Research, University of Mississippi, University, MS 38677, USA
| | - Shamba Chatterjee
- Department of BioMolecular Sciences, Division of Medicinal Chemistry, University of Mississippi, University, MS 38677, USA
| | - Tomayo Berida
- Department of BioMolecular Sciences, Division of Medicinal Chemistry, University of Mississippi, University, MS 38677, USA
| | - Robert J. Doerksen
- Department of BioMolecular Sciences, Division of Medicinal Chemistry, University of Mississippi, University, MS 38677, USA
| | - Sudeshna Roy
- Department of BioMolecular Sciences, Division of Medicinal Chemistry, University of Mississippi, University, MS 38677, USA
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8
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Okamoto K, Ishikawa A, Okawa R, Yamamoto K, Sato T, Yokota SI, Chiba K, Ichikawa S. Design, synthesis and biological evaluation of simplified analogues of MraY inhibitory natural product with rigid scaffold. Bioorg Med Chem 2022; 55:116556. [PMID: 35016115 DOI: 10.1016/j.bmc.2021.116556] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 11/26/2021] [Accepted: 11/29/2021] [Indexed: 11/15/2022]
Abstract
Muraymycins and caprazamycins are strong inhibitors of MraY, which is responsible for peptidoglycan biosynthesis. Although they are promising antibacterial agents with a novel mode of action, their chemical structures are rather complex. This study investigated the simplification of these natural products by structure-based drug design, synthesis, and biological evaluation. We developed a simplified rigid scaffold with an arylalkyne moiety, which shows sub-micromolar MraY inhibitory activity. The scaffold is suitable for further investigating the structure-activity relationship by virtue of our synthetic strategy, where the substituent of interest is installed in the last stage of synthesis. This scaffold shows the potential for further use in optimizing MraY inhibitory and antibacterial activities.
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Affiliation(s)
- Kazuhiro Okamoto
- Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| | - Aoi Ishikawa
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12, Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Ryotaro Okawa
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12, Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Kazuki Yamamoto
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12, Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Toyotaka Sato
- Department of Microbiology, Sapporo Medical University, South-1, West-17, Chuo-ku, Sapporo 060-8556, Japan; Laboratory of Veterinary Hygiene, School/Faculty of Veterinary Medicine, Hokkaido University, Kita-18, Nishi-9, Kita-ku, Sapporo 060-0818, Japan
| | - Shin-Ichi Yokota
- Department of Microbiology, Sapporo Medical University, South-1, West-17, Chuo-ku, Sapporo 060-8556, Japan
| | - Kazuhiro Chiba
- Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| | - Satoshi Ichikawa
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12, Nishi-6, Kita-ku, Sapporo 060-0812, Japan; Center for Research and Education on Drug Discovery, Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12, Nishi-6, Kita-ku, Sapporo 060-0812, Japan; Global Station for Biosurfaces and Drug Discovery, Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Kita-12, Nishi-6, Kita-ku, Sapporo 060-0812, Japan
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9
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Sarkar T, Talukdar K, Das BK, Shah TA, Debnath B, Punniyamurthy T. The transition-metal-catalyzed stereoselective ring-expansion of vinylaziridines and vinyloxiranes. Org Biomol Chem 2021; 19:3776-3790. [PMID: 33949586 DOI: 10.1039/d1ob00259g] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The transition-metal-aided stereoselective construction of sp3-carbon-rich heterocyclic scaffolds using strained-ring systems has received considerable attention in recent years due to the prominent presence of these scaffolds in myriad natural products, bioactive molecules, and pharmaceutical components. In this area, the catalytic ring-enlargement of vinylaziridines and vinyloxiranes plays a predominant role when synthesizing high sp3-content biorelevant heterocyclic compounds. This article aims to portray recent advancements in the ring-expansion of vinylaziridines and vinyloxiranes for accessing densely functionalized stereoselective heterocycles that have been developed over the past five years, with an emphasis on the substrate scopes and mechanistic insights into the key methodologies, and it is arranged based on the transition metals used and the ring sizes of the heterocyclic scaffolds.
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Affiliation(s)
- Tanumay Sarkar
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India.
| | - Kangkan Talukdar
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India.
| | - Bijay Ketan Das
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India.
| | - Tariq A Shah
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India. and Government Srinagar Women's College, Zakura Srinagar 190006, India
| | - Bijoy Debnath
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India.
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10
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Claraz A, Djian A, Masson G. Electrochemical tandem trifluoromethylation of allylamines/formal (3 + 2)-cycloaddition for the rapid access to CF3-containing imidazolines and oxazolidines. Org Chem Front 2021. [DOI: 10.1039/d0qo01307b] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
A straightforward and environmentally friendly synthesis of CF3-containing imidazolines and oxazolidines has been developed through an electrochemical three-component reaction among allylamines, the Langlois reagent, and nitrile or carbonyl compounds.
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Affiliation(s)
- Aurélie Claraz
- Institut de Chimie des Substances Naturelles
- Université Paris Saclay
- CNRS
- UPR2301
- 91198 Gif-sur-Yvette cedex
| | - Aurélie Djian
- Institut de Chimie des Substances Naturelles
- Université Paris Saclay
- CNRS
- UPR2301
- 91198 Gif-sur-Yvette cedex
| | - Géraldine Masson
- Institut de Chimie des Substances Naturelles
- Université Paris Saclay
- CNRS
- UPR2301
- 91198 Gif-sur-Yvette cedex
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11
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Wender PA, Sloane JL, Luu-Nguyen QH, Ogawa Y, Shimizu AJ, Ryckbosch SM, Tyler JH, Hardman C. Function-Oriented Synthesis: Design, Synthesis, and Evaluation of Highly Simplified Bryostatin Analogues. J Org Chem 2020; 85:15116-15128. [PMID: 33200928 DOI: 10.1021/acs.joc.0c01988] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Using a function-oriented synthesis strategy, we designed, synthesized, and evaluated the simplest bryostatin 1 analogues reported to date, in which bryostatin's A- and B-rings are replaced by a glutarate linker. These analogues, one without and one with a C26-methyl group, exhibit remarkably different protein kinase C (PKC) isoform affinities. The former exhibited bryostatin-like binding to several PKC isoforms with Ki's < 5 nM, while the latter exhibited PKC affinities that were up to ∼180-fold less potent. The analogue with bryostatin-like PKC affinities also exhibited bryostatin-like PKC translocation kinetics in vitro, indicating rapid cell permeation and engagement of its PKC target. This study exemplifies the power of function-oriented synthesis in reducing structural complexity by activity-informed design, thus enhancing synthetic accessibility, while still maintaining function (biological activity), collectively providing new leads for addressing the growing list of therapeutic indications exhibited by PKC modulators.
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Affiliation(s)
- Paul A Wender
- Department of Chemistry, Stanford University, Stanford, California 94305, United States.,Department of Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Jack L Sloane
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Quang H Luu-Nguyen
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Yasuyuki Ogawa
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Akira J Shimizu
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Steven M Ryckbosch
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Jefferson H Tyler
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Clayton Hardman
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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12
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Wu X, Zhu ZH, He H, Ren L, Zhu CF, Li YG. Construction of 1,3-Oxazolidines through a Three-Component [3+2] Cycloaddition of Tetrahydroisoquinolines, Aldehydes, and Ethyl Ketomalonate. J Org Chem 2020; 85:6216-6224. [PMID: 32270678 DOI: 10.1021/acs.joc.0c00616] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A chemoselective and diastereoselective synthesis of fused oxazolidines was achieved by a three-component cascade reaction of tetrahydroisoquinolines (THIQs), α,β-unsaturated aldehydes, and diethyl 2-oxomalonate. Probably due to the reactivity difference between the aldehyde and the ketone, the reaction proceeded through the condensation of THIQs with α,β-unsaturated aldehydes and 1,3-dipolar cycloaddition of the generated azomethine ylide intermediate with 2-oxomalonate. The key features are easily available starting materials, mild reaction conditions, broad substrate scope, and high chemo- and diastereoselectivity.
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Affiliation(s)
- Xiang Wu
- Anhui Province Key Laboratory of Advanced Catalytic Materials and Reaction Engineering, School of Chemistry and Chemical Engineering, Hefei University of Technology, Hefei 230009, China
| | - Zheng-Hao Zhu
- Anhui Province Key Laboratory of Advanced Catalytic Materials and Reaction Engineering, School of Chemistry and Chemical Engineering, Hefei University of Technology, Hefei 230009, China
| | - Hao He
- Anhui Province Key Laboratory of Advanced Catalytic Materials and Reaction Engineering, School of Chemistry and Chemical Engineering, Hefei University of Technology, Hefei 230009, China
| | - Lei Ren
- College of Materials and Chemical Engineering, Bengbu University, Bengbu 233030, China
| | - Cheng-Feng Zhu
- Anhui Province Key Laboratory of Advanced Catalytic Materials and Reaction Engineering, School of Chemistry and Chemical Engineering, Hefei University of Technology, Hefei 230009, China
| | - You-Gui Li
- Anhui Province Key Laboratory of Advanced Catalytic Materials and Reaction Engineering, School of Chemistry and Chemical Engineering, Hefei University of Technology, Hefei 230009, China
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13
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Tarannum S, Sk S, Das S, Wani IA, Ghorai MK. Stereoselective Syntheses of Highly Functionalized Imidazolidines and Oxazolidines via Ring-Opening Cyclization of Activated Aziridines and Epoxides with Amines and Aldehydes. J Org Chem 2020; 85:367-379. [PMID: 31782305 DOI: 10.1021/acs.joc.9b02278] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
A mild one-pot stereospecific synthetic route to highly functionalized imidazolidines and oxazolidines via SN2-type ring-opening of the corresponding activated aziridines and epoxides with amines followed by p-toluenesulfonic acid (PTSA)-catalyzed intramolecular cyclization with aldehydes has been developed. The methodology tolerates a variety of functional groups and furnishes the desired products in high yields (up to 92%) with excellent stereoselectivities (de, ee > 99%). Interestingly, imidazolidines were formed as the cis-isomers, whereas oxazolidines were produced as trans-isomers exclusively.
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Affiliation(s)
- Saima Tarannum
- Department of Chemistry , Indian Institute of Technology , 208016 Kanpur , Uttar Pradesh , India
| | - Sahid Sk
- Department of Chemistry , Indian Institute of Technology , 208016 Kanpur , Uttar Pradesh , India
| | - Subhomoy Das
- Department of Chemistry , Indian Institute of Technology , 208016 Kanpur , Uttar Pradesh , India
| | - Imtiyaz Ahmad Wani
- Department of Chemistry , Indian Institute of Technology , 208016 Kanpur , Uttar Pradesh , India
| | - Manas K Ghorai
- Department of Chemistry , Indian Institute of Technology , 208016 Kanpur , Uttar Pradesh , India
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14
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Yang S, Chen Y, Yuan Z, Bu F, Jiang C, Ding Z. Divergent synthesis of oxazolidines and morpholines via PhI(OAc)2-mediated difunctionalization of alkenes. Org Biomol Chem 2020; 18:9873-9882. [DOI: 10.1039/d0ob01987a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein we describe the PhI(OAc)2-mediated 1,1- and 1,2-difunctionalization of alkenes with N-tosyl amino alcohols to form oxazolidine and morpholine derivatives.
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Affiliation(s)
- Shuang Yang
- Jiangsu Key Laboratory of Drug Design and Optimization
- Department of Medicinal Chemistry
- School of Pharmacy
- China Pharmaceutical University
- Nanjing 211198
| | - Yuhang Chen
- Jiangsu Key Laboratory of Drug Design and Optimization
- Department of Medicinal Chemistry
- School of Pharmacy
- China Pharmaceutical University
- Nanjing 211198
| | - Zidan Yuan
- Jiangsu Key Laboratory of Drug Design and Optimization
- Department of Medicinal Chemistry
- School of Pharmacy
- China Pharmaceutical University
- Nanjing 211198
| | - Feiyu Bu
- Jiangsu Key Laboratory of Drug Design and Optimization
- Department of Medicinal Chemistry
- School of Pharmacy
- China Pharmaceutical University
- Nanjing 211198
| | - Cheng Jiang
- Jiangsu Key Laboratory of Drug Design and Optimization
- Department of Medicinal Chemistry
- School of Pharmacy
- China Pharmaceutical University
- Nanjing 211198
| | - Zhenhua Ding
- Jiangsu Key Laboratory of Drug Design and Optimization
- Department of Medicinal Chemistry
- School of Pharmacy
- China Pharmaceutical University
- Nanjing 211198
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15
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Chu X, Ge D, Wang M, Rao W, Loh T, Shen Z. Chemo‐ and Regioselective Ring Construction Driven by Visible‐Light Photoredox Catalysis: an Access to Fluoroalkylated Oxazolidines Featuring an All‐Substituted Carbon Stereocenter. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201900585] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Xue‐Qiang Chu
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing 211816 People's Republic of China
| | - Danhua Ge
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing 211816 People's Republic of China
| | - Mao‐Lin Wang
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing 211816 People's Republic of China
| | - Weidong Rao
- Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, College of Chemical Engineering Nanjing Forestry University Nanjing 210037 People's Republic of China
| | - Teck‐Peng Loh
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing 211816 People's Republic of China
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences Nanyang Technological University Singapore 637371 Singapore
| | - Zhi‐Liang Shen
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing 211816 People's Republic of China
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16
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Patel B, Grant G, Zunk M, Rudrawar S. Stereoselective Approaches toward the Synthesis of Nucleoside Antibiotic Core Aminoribosyl Glycyluridine. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900708] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Bhautikkumar Patel
- School of Pharmacy and Pharmacology Griffith University Gold Coast QLD 4222 Australia
- Quality Use of Medicines Network Griffith University Gold Coast QLD 4222 Australia
| | - Gary Grant
- School of Pharmacy and Pharmacology Griffith University Gold Coast QLD 4222 Australia
- Quality Use of Medicines Network Griffith University Gold Coast QLD 4222 Australia
| | - Matthew Zunk
- School of Pharmacy and Pharmacology Griffith University Gold Coast QLD 4222 Australia
- Quality Use of Medicines Network Griffith University Gold Coast QLD 4222 Australia
- Menzies Health Institute Queensland Griffith University Gold Coast QLD 4222 Australia
| | - Santosh Rudrawar
- School of Pharmacy and Pharmacology Griffith University Gold Coast QLD 4222 Australia
- Quality Use of Medicines Network Griffith University Gold Coast QLD 4222 Australia
- Menzies Health Institute Queensland Griffith University Gold Coast QLD 4222 Australia
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17
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Patel B, Ryan P, Makwana V, Zunk M, Rudrawar S, Grant G. Caprazamycins: Promising lead structures acting on a novel antibacterial target MraY. Eur J Med Chem 2019; 171:462-474. [DOI: 10.1016/j.ejmech.2019.01.071] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 01/24/2019] [Accepted: 01/28/2019] [Indexed: 11/29/2022]
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18
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Wiker F, Hauck N, Grond S, Gust B. Caprazamycins: Biosynthesis and structure activity relationship studies. Int J Med Microbiol 2019; 309:319-324. [PMID: 31138496 DOI: 10.1016/j.ijmm.2019.05.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 05/14/2019] [Accepted: 05/20/2019] [Indexed: 11/28/2022] Open
Abstract
Cell wall biosynthesis represents a valid target for antibacterial action but only a limited number of chemical structure classes selectively interact with specific enzymes or protein structures like transporters of the cell envelope. The integral membrane protein MraY translocase is essential for peptidoglycan biosynthesis catalysing the transfer of the peptidoglycan precursor phospho-MurNAc-pentapeptide to the lipid carrier undecaprenyl phosphate, thereby generating the cell wall intermediate lipid I. Not present in eukaryotic cells, MraY is a member of the superfamily of yet not well-understood integral membrane enzymes which involve proteins for bacterial lipopolysaccharide and teichoic acid or eukaryotic N-linked saccharides biosynthesis. Different natural nucleoside antibiotics as inhibitors of MraY translocase have been discovered comprising a glycosylated heterocyclic pyrimidin base among other potential lipid-, peptidic- or sugar moieties. Caprazamycins are liponucleoside antibiotics isolated from Streptomyces sp. MK730-62F2. They possess activity in vitro against Gram-positive bacteria, in particular against the genus Mycobacterium including M. intracellulare, M. avium and M. tuberculosis. Structural elucidation revealed the (+)-caprazol core skeleton as a unique moiety, the caprazamycins share with other MraY inhibitors such as the liposidomycins, A-90289 and the muraminomicins. They also share structural features such as uridyl-, aminoribosyl- and fatty acyl-moieties with other MraY translocase inhibitors like FR-900493 and the muraymycins. Intensive studies on their biosynthesis during the last decade identified not only common initial biosynthetic steps, but also revealed possible branching points towards individual biosynthesis of the respective compound. Structural diversity of caprazamycins was generated by feeding experiments, genetic engineering of the biosynthetic gene clusters and chemical synthesis for structure activity relationship studies with its target, MraY translocase.
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Affiliation(s)
- Franziska Wiker
- Pharmaceutical Biology, Pharmaceutical Institute, University of Tübingen, 72076 Tübingen, Germany
| | - Nils Hauck
- Pharmaceutical Biology, Pharmaceutical Institute, University of Tübingen, 72076 Tübingen, Germany
| | - Stephanie Grond
- Institute of Organic Chemistry, University of Tübingen, 72076 Tübingen, Germany
| | - Bertolt Gust
- Pharmaceutical Biology, Pharmaceutical Institute, University of Tübingen, 72076 Tübingen, Germany.
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19
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Nakamura H, Tsukano C, Yoshida T, Yasui M, Yokouchi S, Kobayashi Y, Igarashi M, Takemoto Y. Total Synthesis of Caprazamycin A: Practical and Scalable Synthesis of syn-β-Hydroxyamino Acids and Introduction of a Fatty Acid Side Chain to 1,4-Diazepanone. J Am Chem Soc 2019; 141:8527-8540. [PMID: 31067040 DOI: 10.1021/jacs.9b02220] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The first total synthesis of caprazamycin A (1), a representative liponucleoside antibiotic, is described. Diastereoselective aldol reactions of aldehydes 12 and 25-27, derived from uridine, with diethyl isocyanomalonate 13 and phenylcarbamate 21 were investigated using thiourea catalysts 14 or bases to synthesize syn-β-hydroxyamino acid derivatives. The 1,4-diazepanone core of 1 was constructed using a Mitsunobu reaction, and the fatty acid side chain was introduced using a stepwise sequence based on model studies. Notably, global deprotection was realized using palladium black and formic acid without hydrogenating the olefin in the uridine unit.
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Affiliation(s)
- Hugh Nakamura
- Graduate School of Pharmaceutical Sciences , Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501 , Japan
| | - Chihiro Tsukano
- Graduate School of Pharmaceutical Sciences , Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501 , Japan
| | - Takuma Yoshida
- Graduate School of Pharmaceutical Sciences , Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501 , Japan
| | - Motohiro Yasui
- Graduate School of Pharmaceutical Sciences , Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501 , Japan
| | - Shinsuke Yokouchi
- Graduate School of Pharmaceutical Sciences , Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501 , Japan
| | - Yusuke Kobayashi
- Graduate School of Pharmaceutical Sciences , Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501 , Japan
| | - Masayuki Igarashi
- Institute of Microbial Chemistry (BIKAKEN), Tokyo , 3-14-23 Kamiosaki , Shinagawa-ku, Tokyo 141-0021 , Japan
| | - Yoshiji Takemoto
- Graduate School of Pharmaceutical Sciences , Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501 , Japan
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20
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Molaee H, Moghadam M, Mirkhani V, Tangestaninejad S, Mohammadpoor-Baltork I, Kajani AA, Kia R. Synthesis of chiral palladium oxazolidine and imine complexes: Investigation the oxazolidine-imine conversion by DFT method. Polyhedron 2019. [DOI: 10.1016/j.poly.2018.11.037] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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21
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Linder R, Ducho C. Unified Synthesis of Densely Functionalized Amino Acid Building Blocks for the Preparation of Caprazamycin Nucleoside Antibiotics. European J Org Chem 2019. [DOI: 10.1002/ejoc.201801667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Ruth Linder
- Department of Pharmacy, Pharmaceutical and Medicinal Chemistry; Saarland University; Campus C2 3 66123 Saarbrücken Germany
| | - Christian Ducho
- Department of Pharmacy, Pharmaceutical and Medicinal Chemistry; Saarland University; Campus C2 3 66123 Saarbrücken Germany
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22
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Abstract
Natural products (NPs) are important sources of clinical drugs due to their structural diversity and biological prevalidation. However, the structural complexity of NPs leads to synthetic difficulties, unfavorable pharmacokinetic profiles, and poor drug-likeness. Structural simplification by truncating unnecessary substructures is a powerful strategy for overcoming these limitations and improving the efficiency and success rate of NP-based drug development. Herein, we will provide a comprehensive review of the structural simplification of NPs with a focus on design strategies, case studies, and new technologies. In particular, a number of successful examples leading to marketed drugs or drug candidates will be discussed in detail to illustrate how structural simplification is applied in lead optimization of NPs.
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Affiliation(s)
- Shengzheng Wang
- Department of Medicinal Chemistry, School of Pharmacy , Second Military Medical University , 325 Guohe Road , Shanghai , 200433 , P.R. China.,Department of Medicinal Chemistry, School of Pharmacy , Fourth Military Medical University , 169 Changle West Road , Xi'an , 710032 , P.R. China
| | - Guoqiang Dong
- Department of Medicinal Chemistry, School of Pharmacy , Second Military Medical University , 325 Guohe Road , Shanghai , 200433 , P.R. China
| | - Chunquan Sheng
- Department of Medicinal Chemistry, School of Pharmacy , Second Military Medical University , 325 Guohe Road , Shanghai , 200433 , P.R. China
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23
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Singh N, Dar AA, Kumar A. A Simple and Efficient Approach for the Synthesis of 1,3-Oxazolidines from β-Amino Alcohols Using Grinding Technique. ChemistrySelect 2018. [DOI: 10.1002/slct.201802369] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Nasseb Singh
- Synthetic Organic Chemistry Laboratory; Faculty of Sciences; Shri Mata Vaishno Devi University Katra; Jammu and Kashmir - 182320 India
| | - Alamgir A. Dar
- Bioorganic Chemistry Division; CSIR-Indian Institute of Integrative Medicine; Canal Road, Jammu Tawi, J & K 180 001 India
- Research Centre for Residue and Quality Analysis; Sher-e-Kashmir University of Agricultural Sciences & Technology Kashmir; Srinagar - 190025, J & K India
| | - Anil Kumar
- Synthetic Organic Chemistry Laboratory; Faculty of Sciences; Shri Mata Vaishno Devi University Katra; Jammu and Kashmir - 182320 India
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24
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Katsuyama A, Ichikawa S. Synthesis and Medicinal Chemistry of Muraymycins, Nucleoside Antibiotics. Chem Pharm Bull (Tokyo) 2018; 66:123-131. [PMID: 29386462 DOI: 10.1248/cpb.c17-00684] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Muraymycins, isolated from a culture broth of Streptomyces sp., are members of a class of naturally occurring nucleoside antibiotics. They are strong inhibitors of the phospho-MurNAc-pentapeptide translocase (MraY), which is responsible for the peptidoglycan biosynthesis. Since MraY is an essential enzyme among bacteria, muraymycins are expected to be a novel antibacterial agent. In this review, our efforts to synthesize muraymycin D2, simplify the chemical structure, improve antibacterial spectrum, and solve the X-ray crystal structure of the muraymycin D2/MraY complex are described.
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Affiliation(s)
| | - Satoshi Ichikawa
- Faculty of Pharmaceutical Science, Hokkaido University.,Center for Research and Education on Drug Discovery, Hokkaido University
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25
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Watanabe T, Shibasaki M. Catalytic Asymmetric Synthesis of Natural Products Directed Toward Development of Novel Anti-infective and Anti-cancer Medicines. J SYN ORG CHEM JPN 2018. [DOI: 10.5059/yukigoseikyokaishi.76.781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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26
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Hering J, Dunevall E, Ek M, Brändén G. Structural basis for selective inhibition of antibacterial target MraY, a membrane-bound enzyme involved in peptidoglycan synthesis. Drug Discov Today 2018; 23:1426-1435. [DOI: 10.1016/j.drudis.2018.05.020] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Revised: 04/13/2018] [Accepted: 05/14/2018] [Indexed: 12/16/2022]
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27
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Kondoh A, Akahira S, Oishi M, Terada M. Enantioselective Formal [3+2] Cycloaddition of Epoxides with Imines under Brønsted Base Catalysis: Synthesis of 1,3‐Oxazolidines with Quaternary Stereogenic Center. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802468] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Azusa Kondoh
- Research and Analytical Center for Giant Molecules Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Shiori Akahira
- Department of Chemistry Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Masafumi Oishi
- Department of Chemistry Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Masahiro Terada
- Department of Chemistry Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
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28
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Kondoh A, Akahira S, Oishi M, Terada M. Enantioselective Formal [3+2] Cycloaddition of Epoxides with Imines under Brønsted Base Catalysis: Synthesis of 1,3‐Oxazolidines with Quaternary Stereogenic Center. Angew Chem Int Ed Engl 2018; 57:6299-6303. [DOI: 10.1002/anie.201802468] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Revised: 04/04/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Azusa Kondoh
- Research and Analytical Center for Giant Molecules Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Shiori Akahira
- Department of Chemistry Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Masafumi Oishi
- Department of Chemistry Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Masahiro Terada
- Department of Chemistry Graduate School of Science Tohoku University Aramaki, Aoba-ku Sendai 980-8578 Japan
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29
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Jiang Y, Deiana L, Alimohammadzadeh R, Liu L, Sun J, Córdova A. Highly Diastereo- and Enantioselective Cascade Synthesis of Bicyclic Lactams in One-Pot. European J Org Chem 2018. [DOI: 10.1002/ejoc.201701789] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Yan Jiang
- Department of Organic Chemistry; The Arrhenius Laboratory; Stockholm University; 106 91 Stockholm Sweden
- The Berzelii Center EXSELENT; Stockholm University; 106 91 Stockholm Sweden
| | - Luca Deiana
- Department of Organic Chemistry; The Arrhenius Laboratory; Stockholm University; 106 91 Stockholm Sweden
- The Berzelii Center EXSELENT; Stockholm University; 106 91 Stockholm Sweden
| | | | - Leifeng Liu
- The Berzelii Center EXSELENT; Stockholm University; 106 91 Stockholm Sweden
- Department of Materials and Environmental Chemistry; Stockholm University; 106 91 Stockholm Sweden
| | - Junliang Sun
- The Berzelii Center EXSELENT; Stockholm University; 106 91 Stockholm Sweden
- Department of Materials and Environmental Chemistry; Stockholm University; 106 91 Stockholm Sweden
| | - Armando Córdova
- Department of Organic Chemistry; The Arrhenius Laboratory; Stockholm University; 106 91 Stockholm Sweden
- The Berzelii Center EXSELENT; Stockholm University; 106 91 Stockholm Sweden
- Department of Natural Sciences; Mid Sweden University; 851 70 Sundsvall Sweden
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30
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Satheesh V, Vivek Kumar S, Punniyamurthy T. Expedient stereospecific Co-catalyzed tandem C–N and C–O bond formation of N-methylanilines with styrene oxides. Chem Commun (Camb) 2018; 54:11813-11816. [DOI: 10.1039/c8cc06223d] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Co(ii)-catalyzed stereospecific sequential C–N and C–O bond formation of styrene oxides with N-methylanilines has been developed. Optically active epoxides can be coupled with high enantiomeric purity.
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Affiliation(s)
- Vanaparthi Satheesh
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati 781039
- India
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31
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Wu X, Zhou W, Wu HH, Zhang J. Enantioselective [3+2] cycloaddition of azomethine ylides and aldehydes via Ni/bis(oxazoline)-catalyzed ring opening of N-tosylaziridines through a chirality transfer approach. Chem Commun (Camb) 2017; 53:5661-5664. [DOI: 10.1039/c7cc02906c] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An enantioselective [3+2] cycloaddition of N-tosylaziridines and aldehydes catalyzed by a Ni(ii)-bisoxazoline complex has been accomplished through a chirality transfer approach.
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Affiliation(s)
- Xingxing Wu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- Department of Chemistry
- East China Normal University
- Shanghai 200062
- China
| | - Wei Zhou
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- Department of Chemistry
- East China Normal University
- Shanghai 200062
- China
| | - Hai-Hong Wu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- Department of Chemistry
- East China Normal University
- Shanghai 200062
- China
| | - Junliang Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- Department of Chemistry
- East China Normal University
- Shanghai 200062
- China
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32
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Bebbington MWP. Natural product analogues: towards a blueprint for analogue-focused synthesis. Chem Soc Rev 2017; 46:5059-5109. [DOI: 10.1039/c6cs00842a] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
A review of approaches to natural product analogues leads to the suggestion of new methods for the generation of biologically active natural product-like scaffolds.
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33
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Satheesh V, Sengoden M, Punniyamurthy T. “On Water” C(sp3)–H Functionalization/C–O/C–N Bonds Formations: Synthesis of Functionalized Oxazolidines and Imidazolidines. J Org Chem 2016; 81:9792-9801. [DOI: 10.1021/acs.joc.6b01850] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Vanaparthi Satheesh
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India
| | - Mani Sengoden
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India
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34
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Serpi M, Ferrari V, Pertusati F. Nucleoside Derived Antibiotics to Fight Microbial Drug Resistance: New Utilities for an Established Class of Drugs? J Med Chem 2016; 59:10343-10382. [PMID: 27607900 DOI: 10.1021/acs.jmedchem.6b00325] [Citation(s) in RCA: 86] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Novel antibiotics are urgently needed to combat the rise of infections due to drug-resistant microorganisms. Numerous natural nucleosides and their synthetically modified analogues have been reported to have moderate to good antibiotic activity against different bacterial and fungal strains. Nucleoside-based compounds target several crucial processes of bacterial and fungal cells such as nucleoside metabolism and cell wall, nucleic acid, and protein biosynthesis. Nucleoside analogues have also been shown to target many other bacterial and fungal cellular processes although these are not well characterized and may therefore represent opportunities to discover new drugs with unique mechanisms of action. In this Perspective, we demonstrate that nucleoside analogues, cornerstones of anticancer and antiviral treatments, also have great potential to be repurposed as antibiotics so that an old drug can learn new tricks.
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Affiliation(s)
- Michaela Serpi
- School of Pharmacy and Pharmaceutical Sciences, Cardiff University , Redwood Building, King Edward VII Avenue, CF10 3NB Cardiff, United Kingdom
| | - Valentina Ferrari
- School of Pharmacy and Pharmaceutical Sciences, Cardiff University , Redwood Building, King Edward VII Avenue, CF10 3NB Cardiff, United Kingdom
| | - Fabrizio Pertusati
- School of Pharmacy and Pharmaceutical Sciences, Cardiff University , Redwood Building, King Edward VII Avenue, CF10 3NB Cardiff, United Kingdom
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35
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Al-Dabbagh B, Olatunji S, Crouvoisier M, El Ghachi M, Blanot D, Mengin-Lecreulx D, Bouhss A. Catalytic mechanism of MraY and WecA, two paralogues of the polyprenyl-phosphate N-acetylhexosamine 1-phosphate transferase superfamily. Biochimie 2016; 127:249-57. [DOI: 10.1016/j.biochi.2016.06.005] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Accepted: 06/07/2016] [Indexed: 10/21/2022]
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36
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Keiko NA, Vchislo NV. Synthesis of Diheteroatomic Five-Membered Heterocyclic Compounds from α,β-Unsaturated Aldehydes. ASIAN J ORG CHEM 2016. [DOI: 10.1002/ajoc.201600227] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- N. A. Keiko
- A. E. Favorsky Irkutsk Institute of Chemistry; Siberian Branch of the Russian Academy of Sciences; 1 Favorsky Street 664033 Irkutsk Russian Federation
| | - N. V. Vchislo
- A. E. Favorsky Irkutsk Institute of Chemistry; Siberian Branch of the Russian Academy of Sciences; 1 Favorsky Street 664033 Irkutsk Russian Federation
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37
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Nakamura H, Yoshida T, Tsukano C, Takemoto Y. Synthesis of CPZEN-45: Construction of the 1,4-Diazepin-2-one Core by the Cu-Catalyzed Intramolecular Amidation of a Vinyl Iodide. Org Lett 2016; 18:2300-3. [PMID: 27088563 DOI: 10.1021/acs.orglett.6b00943] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
CPZEN-45 was developed as an antibiotic against Mycobacterium tuberculosis by the chemical modification of caprazamycins. CPZEN-45 has been synthesized in this study by the Cu-catalyzed intramolecular amidation of a complex vinyl iodide precursor bearing uridine and sugar moieties with a secondary amide, allowing for the construction of its 1,4-diazepin-2-one core.
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Affiliation(s)
- Hugh Nakamura
- Graduate School of Pharmaceutical Sciences, Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
| | - Takuma Yoshida
- Graduate School of Pharmaceutical Sciences, Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
| | - Chihiro Tsukano
- Graduate School of Pharmaceutical Sciences, Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
| | - Yoshiji Takemoto
- Graduate School of Pharmaceutical Sciences, Kyoto University , Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
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38
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Structural insights into inhibition of lipid I production in bacterial cell wall synthesis. Nature 2016; 533:557-560. [PMID: 27088606 PMCID: PMC4882255 DOI: 10.1038/nature17636] [Citation(s) in RCA: 85] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2015] [Accepted: 03/01/2016] [Indexed: 12/30/2022]
Abstract
Antibiotic-resistant bacterial infection is a serious threat to public health. Peptidoglycan biosynthesis is a well-established target for antibiotic development. MraY (phospho-MurNAc-pentapeptide translocase) catalyzes the first and an essential membrane step of peptidoglycan biosynthesis. It is considered a very promising target for the development of new antibiotics, as many naturally occuring nucleoside inhibitors with antibacterial activity target this enzyme1-4. However, antibiotics targeting MraY have not been developed for clinical use mainly due to a lack of structural insight into inhibition of this enzyme. Here we present the crystal structure of MraY from Aquifex aeolicus (MraYAA) in complex with its naturally occurring inhibitor, muraymycin D2 (MD2). Upon binding MD2, MraYAA undergoes remarkably large conformational rearrangements near the active site, which lead to the formation of a nucleoside-binding pocket and a peptide-binding site. MD2 binds the nucleoside-binding pocket like a two-pronged plug inserting into a socket. Additional interactions it makes in the adjacent peptide-binding site anchor MD2 to and enhance its affinity for MraYAA. Surprisingly, MD2 does not interact with three acidic residues or the Mg2+ cofactor required for catalysis, suggesting that MD2 binds to MraYAA in a manner that overlaps with, but is distinct from its natural substrate, UDP-MurNAc-pentapeptide. We have deciphered the chemical logic of MD2 binding to MraYAA, including how it avoids the need for pyrophosphate and sugar moieties, which are essential features for substrate binding. The conformational plasticity of MraY could be the reason that it is the target of many structurally distinct inhibitors. These findings can inform the design of new inhibitors targeting MraY as well as its paralogs, WecA and TarO.
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39
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Zhou C, Chen X, Wu L, Qu J. Distribution of drug-resistant bacteria and rational use of clinical antimicrobial agents. Exp Ther Med 2016; 11:2229-2232. [PMID: 27313667 PMCID: PMC4888038 DOI: 10.3892/etm.2016.3239] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Accepted: 04/08/2016] [Indexed: 01/19/2023] Open
Abstract
Open wound may lead to infection in patients. Due to overuse of medication, certain bacteria have become resistant to drugs currently available. The aim of the present study was to provide a guide to ameliorate the appropriate and rational use of clinical antimicrobial agents by analyzing the distribution of drug-resistant pathogenic bacteria in patients. Between October 2013 and January 2015, 126 patients were selected at the Department of Orthopedics. Wound secretion samples were collected, and the pathogen bacteria isolated and identified. Identification was performed using an automated identification instrument and the Kirby-Bauer antibiotic method was used to evaluate the bacterial resistance. Of the 126 patients, 118 patients were infected (infection rate, 93.65%). Additionally, 47 strains of gram-positive pathogenic bacteria (39.83%) and 71 strains of pathogenic-gram negative bacteria (60.17%) were identified. The bacteria were most likely to be resistant to penicillin while sensitive to vancomycin and imipenem. Some bacteria were resistant to several antibacterial agents. The results showed that existing risk factors at the Department of Orthopedics were complex and any non-standard procedures were able to cause bacterial infection. There were obvious dissimilarities among infectious bacteria with regard to their sensitivity to various antibacterial agents. Manipulation techniques during the treatment process were performed in a sterile manner and the use of antibacterial agents was required to be strictly in accordance with the results of drug sensitivity tests to provide effective etiologic information and a treatment plan for clinical trials and to reduce the risk of infection by multi-resistant bacteria.
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Affiliation(s)
- Chenliang Zhou
- Department of Orthopedic Surgery, The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150001, P.R. China
| | - Xiaobing Chen
- The People's Hospital in Altay Region, Altay, Xinjiang 836500, P.R. China
| | - Liwen Wu
- Department of Orthopedic Surgery, The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150001, P.R. China
| | - Jing Qu
- Department of Orthopedic Surgery, The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150001, P.R. China
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40
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Ichikawa S. Function-Oriented Synthesis: How to Design Simplified Analogues of Antibacterial Nucleoside Natural Products? CHEM REC 2016; 16:1106-15. [DOI: 10.1002/tcr.201500247] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Indexed: 11/05/2022]
Affiliation(s)
- Satoshi Ichikawa
- Center for Research and Education on Drug Discovery, Faculty of Pharmaceutical Sciences Hokkaido University; Kita-12 Nishi-6 Kita-ku Sapporo 060-0812 Japan
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41
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Crane EA, Gademann K. Synthetisch gewonnene Naturstofffragmente in der Wirkstoffentwicklung. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201505863] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Erika A. Crane
- Departement Chemie; Universität Basel; St. Johanns-Ring 19 CH-4056 Basel Schweiz
| | - Karl Gademann
- Departement Chemie; Universität Basel; St. Johanns-Ring 19 CH-4056 Basel Schweiz
- Institut für Chemie; Universität Zürich; Winterthurerstrasse 190 CH-8057 Zürich Schweiz
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42
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Crane EA, Gademann K. Capturing Biological Activity in Natural Product Fragments by Chemical Synthesis. Angew Chem Int Ed Engl 2016; 55:3882-902. [PMID: 26833854 PMCID: PMC4797711 DOI: 10.1002/anie.201505863] [Citation(s) in RCA: 106] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Indexed: 12/22/2022]
Abstract
Natural products have had an immense influence on science and have directly led to the introduction of many drugs. Organic chemistry, and its unique ability to tailor natural products through synthesis, provides an extraordinary approach to unlock the full potential of natural products. In this Review, an approach based on natural product derived fragments is presented that can successfully address some of the current challenges in drug discovery. These fragments often display significantly reduced molecular weights, reduced structural complexity, a reduced number of synthetic steps, while retaining or even improving key biological parameters such as potency or selectivity. Examples from various stages of the drug development process up to the clinic are presented. In addition, this process can be leveraged by recent developments such as genome mining, antibody–drug conjugates, and computational approaches. All these concepts have the potential to identify the next generation of drug candidates inspired by natural products.
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Affiliation(s)
- Erika A Crane
- Department of Chemistry, University of Basel, Switzerland
| | - Karl Gademann
- Department of Chemistry, University of Basel, Switzerland. .,Department of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland.
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43
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Chiba T, Nakaya T, Katayama K, Matsuda A, Ichikawa S. Natural Product Synthesis by Multicomponent Reaction and Structure-activity Relationship Study. J SYN ORG CHEM JPN 2016. [DOI: 10.5059/yukigoseikyokaishi.74.426] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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44
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Kondoh A, Odaira K, Terada M. Ring expansion of epoxides under Brønsted base catalysis: formal [3+2] cycloaddition of β,γ-epoxy esters with imines providing 2,4,5-trisubstituted 1,3-oxazolidines. Angew Chem Int Ed Engl 2015; 54:11240-4. [PMID: 26352032 DOI: 10.1002/anie.201505893] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Revised: 07/17/2015] [Indexed: 11/07/2022]
Abstract
A novel ring-expansion reaction of epoxides under Brønsted base catalysis was developed. The formal [3+2] cycloaddition reaction of β,γ-epoxy esters with imines proceeds in the presence of triazabicyclodecene (TBD) as a superior Brønsted base catalyst to afford 2,4,5-trisubstituted 1,3-oxazolidines in a highly diastereoselective manner. This reaction involves the ring opening of the epoxides with the aid of the Brønsted base catalyst to generate α,β-unsaturated esters having an alkoxide at the allylic position, which would formally serve as a synthetic equivalent of the 1,3-dipole, followed by a cycloaddition reaction with imines in a stepwise fashion. This methodology enables the facile synthesis of enantioenriched 1,3-oxazolidines from easily accessible enantioenriched epoxides.
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Affiliation(s)
- Azusa Kondoh
- Research and Analytical Center for Giant Molecules, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578 (Japan)
| | - Kenta Odaira
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578 (Japan)
| | - Masahiro Terada
- Research and Analytical Center for Giant Molecules, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578 (Japan). .,Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578 (Japan).
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45
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Kondoh A, Odaira K, Terada M. Ring Expansion of Epoxides under Brønsted Base Catalysis: Formal [3+2] Cycloaddition of β,γ-Epoxy Esters with Imines Providing 2,4,5-Trisubstituted 1,3-Oxazolidines. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201505893] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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46
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Ichikawa S, Yamaguchi M, Hsuan LS, Kato Y, Matsuda A. Carbacaprazamycins: Chemically Stable Analogues of the Caprazamycin Nucleoside Antibiotics. ACS Infect Dis 2015; 1:151-6. [PMID: 27622529 DOI: 10.1021/id5000376] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Carbacaprazamycins, which are chemically stable analogues of caprazamycins, were designed and synthesized. These analogues were active against drug-resistant bacterial pathogens such as methicillin-resistant Staphylococcus aureus and vancomycin-resistant enterococci, and their activities were comparable to those of the parent caprazamycins. The effect of treatment with carbacaprazamycin on morphological changes in S. aureus indicated that the mode of action was completely different from those of existing peptidoglycan inhibitors.
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Affiliation(s)
- Satoshi Ichikawa
- Faculty of Pharmaceutical Sciences and ‡Center for Research
and Education on Drug Discovery, Hokkaido University, Kita-12,
Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Mayumi Yamaguchi
- Faculty of Pharmaceutical Sciences and ‡Center for Research
and Education on Drug Discovery, Hokkaido University, Kita-12,
Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Lee Shang Hsuan
- Faculty of Pharmaceutical Sciences and ‡Center for Research
and Education on Drug Discovery, Hokkaido University, Kita-12,
Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Yuta Kato
- Faculty of Pharmaceutical Sciences and ‡Center for Research
and Education on Drug Discovery, Hokkaido University, Kita-12,
Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Akira Matsuda
- Faculty of Pharmaceutical Sciences and ‡Center for Research
and Education on Drug Discovery, Hokkaido University, Kita-12,
Nishi-6, Kita-ku, Sapporo 060-0812, Japan
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47
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Nakamura H, Tsukano C, Yasui M, Yokouchi S, Igarashi M, Takemoto Y. Total Synthesis of (−)-Caprazamycin A. Angew Chem Int Ed Engl 2015; 54:3136-9. [DOI: 10.1002/anie.201411954] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2014] [Indexed: 12/19/2022]
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48
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Nakamura H, Tsukano C, Yasui M, Yokouchi S, Igarashi M, Takemoto Y. Total Synthesis of (−)-Caprazamycin A. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201411954] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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49
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Nakaya T, Matsuda A, Ichikawa S. Design, synthesis and biological evaluation of 5′-C-piperidinyl-5′-O-aminoribosyluridines as potential antibacterial agents. Org Biomol Chem 2015; 13:7720-35. [DOI: 10.1039/c5ob01037c] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Caprazamycin analogues, which were designed and synthesized via an aza-Prins–Ritter reaction, exhibit a good MraY and antibacterial activity without cytotoxicity against human cells.
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Affiliation(s)
- Takeshi Nakaya
- Faculty of Pharmaceutical Sciences
- Hokkaido University
- Sapporo 060-0812
- Japan
| | - Akira Matsuda
- Faculty of Pharmaceutical Sciences
- Hokkaido University
- Sapporo 060-0812
- Japan
- Center for Research and Education on Drug Discovery
| | - Satoshi Ichikawa
- Faculty of Pharmaceutical Sciences
- Hokkaido University
- Sapporo 060-0812
- Japan
- Center for Research and Education on Drug Discovery
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50
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Yamaguchi M, Matsuda A, Ichikawa S. Synthesis of isoxazolidine-containing uridine derivatives as caprazamycin analogues. Org Biomol Chem 2015; 13:1187-97. [DOI: 10.1039/c4ob02142h] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Simplification of caprazamycins was conducted by scaffold-hopping of the structurally complex diazepanone moiety to the isoxazolidine scaffold.
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Affiliation(s)
- Mayumi Yamaguchi
- Faculty of Pharmaceutical Sciences
- Hokkaido University
- Sapporo 060-0812
- Japan
| | - Akira Matsuda
- Faculty of Pharmaceutical Sciences
- Hokkaido University
- Sapporo 060-0812
- Japan
| | - Satoshi Ichikawa
- Faculty of Pharmaceutical Sciences
- Hokkaido University
- Sapporo 060-0812
- Japan
- Center for Research and Education on Drug Discovery
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