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Shavrina OM, Rassukana YV, Onysko PP. Recent Advancements in the Synthesis of α-fluoroalkylated Azine-derived Heterocycles through Direct Fluorination. Curr Org Synth 2024; 21:1053-1074. [PMID: 38037906 DOI: 10.2174/0115701794271650231016094853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 09/08/2023] [Accepted: 09/21/2023] [Indexed: 12/02/2023]
Abstract
The review highlights recent advancements in the synthesis of α-fluoro and α,α- difluoroalkylated azines, focusing on two main approaches. The first approach involves nucleophilic deoxofluorination, wherein α-hydroxy- or α-oxoalkylated azines are treated with diethylaminosulfur trifluoride or other S-F reagents to introduce fluorine atoms. The second approach employs direct electrophilic benzylic fluorination, whereby alkylazines undergo fluorination using N-F reagents. Both methods provide flexibility in designing and synthesizing fluoroalkylated heterocycles.
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Affiliation(s)
- Oksana M Shavrina
- Department of Chemistry of Organoelement Compounds, Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Akademika Kukharya str., Kyiv, 02660, Ukraine
| | - Yuliya V Rassukana
- Department of Chemistry of Organoelement Compounds, Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Akademika Kukharya str., Kyiv, 02660, Ukraine
| | - Petro P Onysko
- Department of Chemistry of Organoelement Compounds, Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Akademika Kukharya str., Kyiv, 02660, Ukraine
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Hao QQ, Chen XM, Pannecouque C, De Clercq E, Wang S, Chen FE. Structure-directed linker optimization of novel HEPTs as non-nucleoside inhibitors of HIV-1 reverse transcriptase. Bioorg Chem 2023; 133:106413. [PMID: 36791619 DOI: 10.1016/j.bioorg.2023.106413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Revised: 02/02/2023] [Accepted: 02/03/2023] [Indexed: 02/11/2023]
Abstract
1-[(2-Hydroxyethoxy)methyl]-6-(phenylthio)thymines (HEPTs) have been previously described as an important class of HIV-1 nonnucleoside reverse transcriptase inhibitors (NNRTIs). In our continuously pursuing HEPT optimization efforts, a series of novel HEPTs, featuring -C(OH)CH2R, -CC, or -CHCH2R linker at the benzylic α-methylene unit, were developed as NNRTIs. Among these new HEPTs, the compound C20 with -CHCH3 group at the benzylic α-methylene unit conferred the highest potency toward WT HIV-1 and selectivity (EC50 = 0.23 μM, SI = 150.20), which was better than the lead compound HEPT (EC50 = 7 μM, SI = 106). Also, C20 was endowed with high efficacy against clinically relevant mutant strains (EC50(L100I) = 1.07 μM; EC50(K103N) = 4.33 μM; EC50(Y181C) = 5.57 μM; EC50(E138K) = 1.06 μM; EC50(F227L+V106A) = 5.45 μM) and wild-type HIV-1 reverse transcriptase (RT) with an IC50 value of 0.55 μM. Molecular docking and molecular dynamics simulations, as well as preliminary structure-activity relationship (SAR) analysis of these new compounds, provided a deeper insight into the key structural features of the interactions between HEPT analogs and HIV-1 RT and laid the foundation for further modification on HEPT scaffold.
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Affiliation(s)
- Qing-Qing Hao
- Engineering Center of Catalysis and Synthesis for Chiral Molecules, Department of Chemistry, Fudan University, Shanghai 200433, China; Shanghai Engineering Center of Industrial Asymmetric Catalysis for Chiral Drugs, Shanghai 200433, China; Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Xiao-Mei Chen
- Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | | | - Erik De Clercq
- Rega Institute for Medical Research, KU Leuven, Herestraat 49, B-3000 Leuven, Belgium
| | - Shuai Wang
- Engineering Center of Catalysis and Synthesis for Chiral Molecules, Department of Chemistry, Fudan University, Shanghai 200433, China; Shanghai Engineering Center of Industrial Asymmetric Catalysis for Chiral Drugs, Shanghai 200433, China.
| | - Fen-Er Chen
- Engineering Center of Catalysis and Synthesis for Chiral Molecules, Department of Chemistry, Fudan University, Shanghai 200433, China; Shanghai Engineering Center of Industrial Asymmetric Catalysis for Chiral Drugs, Shanghai 200433, China; Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China.
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Linker optimization of HEPT derivatives as potent non-nucleoside HIV-1 reverse transcriptase inhibitors: from S=O to CHOR. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.07.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Sánchez-Roa D, Mosquera MEG, Cámpora J. NHC-CDI Betaine Adducts and Their Cationic Derivatives as Catalyst Precursors for Dichloromethane Valorization. J Org Chem 2021; 86:16725-16735. [PMID: 34724613 PMCID: PMC8650018 DOI: 10.1021/acs.joc.1c01971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
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Zwitterionic adducts
of N-heterocyclic carbene and carbodiimide
(NHC-CDI) are an emerging class of organic compounds with promising
properties for applications in various fields. Herein, we report the
use of the ICyCDI(p-Tol) betaine adduct (1a) and its cationic derivatives 2a and 3a as catalyst precursors for the dichloromethane valorization via
transformation into high added value products CH2Z2 (Z = OR, SR or NR2). This process implies selective
chloride substitution of dichloromethane by a range of nucleophiles
Na+Z– (preformed or generated in situ from HZ and an inorganic base) to yield formaldehyde-derived
acetals, dithioacetals, or aminals with full selectivity. The reactions
are conducted in a multigram-scale under very mild conditions, using
dichloromethane both as a reagent and solvent, and very low catalyst
loading (0.01 mol %). The CH2Z2 derivatives
were isolated in quantitative yields after filtration and evaporation,
which facilitates recycling the dichloromethane excess. Mechanistic
studies for the synthesis of methylal CH2(OMe)2 rule out organocatalysis as being responsible for the CH2 transfer, and a phase-transfer catalysis mechanism is proposed instead.
Furthermore, we observed that 1a and 2a react
with NaOMe to form unusual isoureate ethers, which are the actual
phase-transfer catalysts, with a strong preference for sodium over
other alkali metal nucleophiles.
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Affiliation(s)
- David Sánchez-Roa
- Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación en Química "Andrés M. del Río" (IQAR) Universidad de Alcalá, Campus Universitario, Alcala de Henares, Madrid 28871, Spain
| | - Marta E G Mosquera
- Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación en Química "Andrés M. del Río" (IQAR) Universidad de Alcalá, Campus Universitario, Alcala de Henares, Madrid 28871, Spain
| | - Juan Cámpora
- Instituto de Investigaciones Químicas, CSIC-Universidad de Sevilla, C/Américo Vespucio, 49, Sevilla 41092, Spain
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Brüning F, Katayev D, Togni A. Facile and Efficient Synthesis of 3-Pyrimidinyl Oxindoles by Phase-Transfer-Catalyzed Regioselective Nucleophilic Aromatic Substitution. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800587] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Fabian Brüning
- Department of Chemistry and Applied Biosciences; Swiss Federal Institute of Technology; ETH Zurich; Vladimir-Prelog-Weg 2 8093 Zurich Switzerland
| | - Dmitry Katayev
- Department of Chemistry and Applied Biosciences; Swiss Federal Institute of Technology; ETH Zurich; Vladimir-Prelog-Weg 2 8093 Zurich Switzerland
| | - Antonio Togni
- Department of Chemistry and Applied Biosciences; Swiss Federal Institute of Technology; ETH Zurich; Vladimir-Prelog-Weg 2 8093 Zurich Switzerland
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Loksha YM, Pedersen EB. Asymmetric Synthesis of Potential Precursors of the HIV Drug MC1220 and Its Analogues by Hydrogenation of (1-Arylvinyl)pyrimidines. J Heterocycl Chem 2018. [DOI: 10.1002/jhet.3168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yasser M. Loksha
- Nucleic Acid Centre, Department of Physics, Chemistry and Pharmacy; University of Southern Denmark; Campusvej 55 DK-5230 Odense M Denmark
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy; Sinai University; Al-Arish North Sinai Egypt
| | - Erik B. Pedersen
- Nucleic Acid Centre, Department of Physics, Chemistry and Pharmacy; University of Southern Denmark; Campusvej 55 DK-5230 Odense M Denmark
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Metaxas I, Vasilikogiannaki E, Stratakis M. Synthesis of Formate Esters and Formamides Using an Au/TiO₂-Catalyzed Aerobic Oxidative Coupling of Paraformaldehyde. NANOMATERIALS 2017; 7:nano7120440. [PMID: 29231853 PMCID: PMC5746930 DOI: 10.3390/nano7120440] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Revised: 11/20/2017] [Accepted: 12/06/2017] [Indexed: 01/06/2023]
Abstract
A simple method for the synthesis of formate esters and formamides is presented based on the Au/TiO₂-catalyzed aerobic oxidative coupling between alcohols or amines and formaldehyde. The suitable form of formaldehyde is paraformaldehyde, as cyclic trimeric 1,3,5-trioxane is inactive. The reaction proceeds via the formation of an intermediate hemiacetal or hemiaminal, respectively, followed by the Au nanoparticle-catalyzed aerobic oxidation of the intermediate. Typically, the oxidative coupling between formaldehyde (2 equiv) and amines occurs quantitatively at room temperature within 4 h, and there is no need to add a base as in analogous coupling reactions. The oxidative coupling between formaldehyde (typically 3 equiv) and alcohols is unprecedented and occurs more slowly, yet in good to excellent yields and selectivity. Minor side-products (2-12%) from the acetalization of formaldehyde by the alcohol are also formed. The catalyst is recyclable and can be reused after a simple filtration in five consecutive runs with a small loss of activity.
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Affiliation(s)
- Ioannis Metaxas
- Department of Chemistry, University of Crete, Voutes, 71003 Iraklion, Greece.
| | | | - Manolis Stratakis
- Department of Chemistry, University of Crete, Voutes, 71003 Iraklion, Greece.
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Subaramanian M, Bera A, Prasad BLV, Balaraman E. Nickel-catalyzed direct synthesis of dialkoxymethane ethers. J CHEM SCI 2017. [DOI: 10.1007/s12039-017-1339-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Zhan L, Pan R, Xing P, Jiang B. An efficient method for the preparation of dialkoxymethanes from dichloromethane with alcohols catalyzed by a Cu-NHC complex. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.07.056] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Loksha YM, Pedersen EB, La Colla P, Loddo R. Facile synthesis of the NNRTI microbicide MC-1220 and synthesis of its phosphoramidate prodrugs. Org Biomol Chem 2015; 14:940-6. [PMID: 26608715 DOI: 10.1039/c5ob02055g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A facile and novel synthetic route to MC-1220 was achieved by condensation of 4,6-dichloro-N,N-5-trimethylpyrimidin-2-amine (1) with the sodium salt of 2,6-difluorophenylacetonitrile, followed by methylation and strong acidic hydrolysis. The prodrugs of MC-1220 were synthesized by reaction of chlorophosphoramidate derivatives (7a-e) or α-acetobromoglucose with the sodium salt of MC-1220. The stability and anti-HIV-1 activity of phosphoramidate prodrugs turned out to be comparable to those of the parent drug MC-1220.
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Affiliation(s)
- Yasser M Loksha
- Nucleic Acid Center, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.
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Zhan P, Pannecouque C, De Clercq E, Liu X. Anti-HIV Drug Discovery and Development: Current Innovations and Future Trends. J Med Chem 2015; 59:2849-78. [PMID: 26509831 DOI: 10.1021/acs.jmedchem.5b00497] [Citation(s) in RCA: 233] [Impact Index Per Article: 25.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
The early effectiveness of combinatorial antiretroviral therapy (cART) in the treatment of HIV infection has been compromised to some extent by rapid development of multidrug-resistant HIV strains, poor bioavailability, and cumulative toxicities, and so there is a need for alternative strategies of antiretroviral drug discovery and additional therapeutic agents with novel action modes or targets. From this perspective, we first review current strategies of antiretroviral drug discovery and optimization, with the aid of selected examples from the recent literature. We highlight the development of phosphate ester-based prodrugs as a means to improve the aqueous solubility of HIV inhibitors, and the introduction of the substrate envelope hypothesis as a new approach for overcoming HIV drug resistance. Finally, we discuss future directions for research, including opportunities for exploitation of novel antiretroviral targets, and the strategy of activation of latent HIV reservoirs as a means to eradicate the virus.
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Affiliation(s)
- Peng Zhan
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences, Shandong University , 44, West Culture Road, 250012, Jinan, Shandong, P. R. China
| | - Christophe Pannecouque
- Rega Institute for Medical Research, Katholieke Universiteit Leuven , Minderbroedersstraat 10, B-3000 Leuven, Belgium
| | - Erik De Clercq
- Rega Institute for Medical Research, Katholieke Universiteit Leuven , Minderbroedersstraat 10, B-3000 Leuven, Belgium
| | - Xinyong Liu
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences, Shandong University , 44, West Culture Road, 250012, Jinan, Shandong, P. R. China
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