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Abstract
From a selection of research topics carried out in our laboratory during the last twenty years it becomes apparent that our main target was the discovery of new or improved synthetic methods together with new properties. Our efforts were made with the aim of being of some utility to other fields of research, with particular emphasis to glycobiology and heterocyle-based bioorganic chemistry. We performed new chemistry mainly in the field of carbohydrate manipulations taking as a primary rule the simplicity and efficiency manners. Toward this end, modern synthetic tools and approaches were employed such as heterocyle-based transformations, multicomponent reactions, organocatalysis, click azide–alkyne cycloadditions, reactions in ionic liquids, click photoinduced thiol-ene coupling, and click sulfur–fluoride exchange chemistry. With these potent methodologies in hand, the syntheses of carbohydrate containing amino acids up to proteins glycosylation were performed.1 Heterocyclic Glycoconjugates and Amino Acids2 Triazole-Linked Oligonucleotides: Application of Click CuAAC3 Non-Natural Glycosyl Amino Acids4 Non-Natural Oligosaccharides5 Calixarene-Based Glycoclusters6 Carbohydrate-Based Building Blocks7 Homoazasugars and Aza-C-disaccharides8 Synthesis of Glycodendrimers9 Peptide and Protein Glycoconjugates10 Conclusions
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2
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Nicolas C, Martin OR. Glycoside Mimics from Glycosylamines: Recent Progress. Molecules 2018; 23:molecules23071612. [PMID: 30004451 PMCID: PMC6100084 DOI: 10.3390/molecules23071612] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 06/26/2018] [Accepted: 06/28/2018] [Indexed: 01/08/2023] Open
Abstract
Glycosylamines are valuable sugar derivatives that have attracted much attention as synthetic intermediates en route to iminosugar-C-glycosyl compounds. Iminosugars are among the most important glycomimetics reported to date due to their powerful activities as inhibitors of a wide variety of glycosidases and glycosyltransferases, as well as for their use as pharmacological chaperones. As they provide ready access to these important glycoside mimics, we have reviewed the most significant glycosylamine-based methodologies developed to date, with a special emphasis on the literature reported after 2006. The groups of substrates covered include N-alkyl- and N-benzyl-glycosylamines, N-glycosylhydroxylamines, N-(alkoxycarbonyl)-, and N-tert-butanesulfinyl-glycosylamines.
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Affiliation(s)
- Cyril Nicolas
- Institute of Organic and Analytical Chemistry, UMR 7311, University of Orleans and CNRS, Rue de Chartres, BP 6759, 45067 Orleans CEDEX 2, France.
| | - Olivier R Martin
- Institute of Organic and Analytical Chemistry, UMR 7311, University of Orleans and CNRS, Rue de Chartres, BP 6759, 45067 Orleans CEDEX 2, France.
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3
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Ionic hydrogenation-directed stereoselective construction of C-20(H) stereogenic center in steroid side chains: Scope and limitations. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.03.029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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4
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Cocaud C, Nicolas C, Bayle A, Poisson T, Pannecoucke X, Martin OR. Synthesis and Reactivity ofN-tert-Butanesulfinyl Glycosylamines. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500487] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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5
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Rowicki T, Malinowski M, Gryszel M, Czerwińska K, Madura I, Mironiuk-Puchalska E, Koszytkowska-Stawińska M, Sas W. Unprotected Xylose-Derived Nitrone in Stereodivergent Synthesis of 4-Hydroxypiperidine Enantiomers: Weak Lewis Acid Induced Alteration of Stereochemistry in 1,3-Dipolar Cycloaddition. European J Org Chem 2015. [DOI: 10.1002/ejoc.201403410] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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6
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Petakamsetty R, Jain VK, Majhi PK, Ramapanicker R. Divergent synthesis of various iminocyclitols from d-ribose. Org Biomol Chem 2015; 13:8512-23. [DOI: 10.1039/c5ob01042j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A very efficient route to the diastereoselective synthesis of polyhydroxy pyrrolidines, piperidines and azepanes from an aldehyde derivative of ribose is reported.
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Affiliation(s)
- Ramu Petakamsetty
- Department of Chemistry and Center for Environmental Science and Engineering
- Indian Institute of Technology Kanpur
- Kanpur
- India
| | - Vipin Kumar Jain
- Department of Chemistry and Center for Environmental Science and Engineering
- Indian Institute of Technology Kanpur
- Kanpur
- India
| | - Pankaj Kumar Majhi
- Department of Chemistry and Center for Environmental Science and Engineering
- Indian Institute of Technology Kanpur
- Kanpur
- India
| | - Ramesh Ramapanicker
- Department of Chemistry and Center for Environmental Science and Engineering
- Indian Institute of Technology Kanpur
- Kanpur
- India
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7
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Blériot Y, Auberger N, Jagadeesh Y, Gauthier C, Prencipe G, Tran AT, Marrot J, Désiré J, Yamamoto A, Kato A, Sollogoub M. Synthesis of 1,2-cis-Homoiminosugars Derived from GlcNAc and GalNAc Exploiting a β-Amino Alcohol Skeletal Rearrangement. Org Lett 2014; 16:5512-5. [DOI: 10.1021/ol502926f] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yves Blériot
- Glycochemistry
Group of “Organic Synthesis” Team, Université de Poitiers, UMR-CNRS
7285 IC2MP, Bât. B28, 4 rue Michel Brunet, TSA 51106, 86073 Poitiers Cedex
9, France
| | - Nicolas Auberger
- Glycochemistry
Group of “Organic Synthesis” Team, Université de Poitiers, UMR-CNRS
7285 IC2MP, Bât. B28, 4 rue Michel Brunet, TSA 51106, 86073 Poitiers Cedex
9, France
| | - Yerri Jagadeesh
- Glycochemistry
Group of “Organic Synthesis” Team, Université de Poitiers, UMR-CNRS
7285 IC2MP, Bât. B28, 4 rue Michel Brunet, TSA 51106, 86073 Poitiers Cedex
9, France
| | - Charles Gauthier
- Glycochemistry
Group of “Organic Synthesis” Team, Université de Poitiers, UMR-CNRS
7285 IC2MP, Bât. B28, 4 rue Michel Brunet, TSA 51106, 86073 Poitiers Cedex
9, France
| | - Giuseppe Prencipe
- Sorbonne Universités,
UPMC Univ Paris 06, Institut Universitaire de France, UMR-CNRS 8232, IPCM, LabEx MiChem, F-75005 Paris, France
| | - Anh Tuan Tran
- Sorbonne Universités,
UPMC Univ Paris 06, Institut Universitaire de France, UMR-CNRS 8232, IPCM, LabEx MiChem, F-75005 Paris, France
| | - Jérôme Marrot
- Institut
Lavoisier
de Versailles, UMR-CNRS 8180, Université de Versailles, 45 avenue des États-Unis, 78035 Versailles Cedex, France
| | - Jérôme Désiré
- Glycochemistry
Group of “Organic Synthesis” Team, Université de Poitiers, UMR-CNRS
7285 IC2MP, Bât. B28, 4 rue Michel Brunet, TSA 51106, 86073 Poitiers Cedex
9, France
| | - Arisa Yamamoto
- Department
of Hospital Pharmacy, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan
| | - Atsushi Kato
- Department
of Hospital Pharmacy, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan
| | - Matthieu Sollogoub
- Sorbonne Universités,
UPMC Univ Paris 06, Institut Universitaire de France, UMR-CNRS 8232, IPCM, LabEx MiChem, F-75005 Paris, France
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8
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Soler A, Garrabou X, Hernández K, Gutiérrez ML, Busto E, Bujons J, Parella T, Joglar J, Clapés P. Sequential Biocatalytic Aldol Reactions in Multistep Asymmetric Synthesis: Pipecolic Acid, Piperidine and Pyrrolidine (Homo)Iminocyclitol Derivatives from Achiral Building Blocks. Adv Synth Catal 2014. [DOI: 10.1002/adsc.201400453] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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9
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Glawar AFG, Jenkinson SF, Newberry SJ, Thompson AL, Nakagawa S, Yoshihara A, Akimitsu K, Izumori K, Butters TD, Kato A, Fleet GWJ. An approach to 8 stereoisomers of homonojirimycin from (D)-glucose via kinetic & thermodynamic azido-γ-lactones. Org Biomol Chem 2014; 11:6886-99. [PMID: 23963282 DOI: 10.1039/c3ob41334a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Crystal structures were obtained for the two C2 epimeric azido-γ-lactones 2-azido-2-deoxy-3,5:6,7-di-O-isopropylidene-d-glycero-d-ido-heptono-1,4-lactone and 2-azido-2-deoxy-3,5:6,7-di-O-isopropylidene-d-glycero-d-gulo-heptono-1,4-lactone prepared from kinetic and thermodynamic azide displacements of a triflate derived from d-glucoheptonolactone. Azido-γ-lactones are very useful intermediates in the synthesis of iminosugars and polyhydroxylated amino acids. In this study two epimeric azido-heptitols allow biotechnological transformations via Izumoring techniques to 8 of the 16 possible homonojirimycin analogues, 5 of which were isolated pure because of the lack of stereoselectivity of the final reductive amination. A side-by-side glycosidase inhibition profile of 11 of the possible 16 HNJ stereoisomers derived from d-glucose and d-mannose is presented.
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Affiliation(s)
- Andreas F G Glawar
- Oxford Glycobiology Institute, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK
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Santana AG, Paz NR, Francisco CG, Suárez E, González CC. Synthesis of Branched Iminosugars through a Hypervalent Iodine(III)-Mediated Radical-Polar Crossover Reaction. J Org Chem 2013; 78:7527-43. [DOI: 10.1021/jo401041s] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Andrés G. Santana
- Instituto de Productos Naturales y Agrobiología del CSIC, Avenida Astrofísico Francisco Sánchez 3, 38206 La
Laguna, Tenerife, Spain
| | - Nieves R. Paz
- Instituto de Productos Naturales y Agrobiología del CSIC, Avenida Astrofísico Francisco Sánchez 3, 38206 La
Laguna, Tenerife, Spain
| | - Cosme G. Francisco
- Instituto de Productos Naturales y Agrobiología del CSIC, Avenida Astrofísico Francisco Sánchez 3, 38206 La
Laguna, Tenerife, Spain
| | - Ernesto Suárez
- Instituto de Productos Naturales y Agrobiología del CSIC, Avenida Astrofísico Francisco Sánchez 3, 38206 La
Laguna, Tenerife, Spain
| | - Concepción C. González
- Instituto de Productos Naturales y Agrobiología del CSIC, Avenida Astrofísico Francisco Sánchez 3, 38206 La
Laguna, Tenerife, Spain
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11
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Rajender A, Rao JP, Rao BV. A Divergent and Stereoselective Approach for the Syntheses of Some Polyhydroxylated Indolizidine and Pyrrolizidine Iminosugars. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201342] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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12
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Zhuang JJ, Ye JL, Zhang HK, Huang PQ. An unexpected high erythro-selection in the Grignard reaction with an N,O-acetal: a concise asymmetric synthesis of indolizidine alkaloid (−)-2-epi-lentiginosine. Tetrahedron 2012. [DOI: 10.1016/j.tet.2011.12.063] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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13
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Stereoselective synthesis and antimicrobial activity of steroidal C-20 tertiary alcohols with thiazole/pyridine side chain. Eur J Med Chem 2011; 46:3681-9. [DOI: 10.1016/j.ejmech.2011.05.032] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2011] [Revised: 05/12/2011] [Accepted: 05/13/2011] [Indexed: 11/24/2022]
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14
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for the period 2005-2006. MASS SPECTROMETRY REVIEWS 2011; 30:1-100. [PMID: 20222147 DOI: 10.1002/mas.20265] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
This review is the fourth update of the original review, published in 1999, on the application of MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2006. The review covers fundamental studies, fragmentation of carbohydrate ions, method developments, and applications of the technique to the analysis of different types of carbohydrate. Specific compound classes that are covered include carbohydrate polymers from plants, N- and O-linked glycans from glycoproteins, glycated proteins, glycolipids from bacteria, glycosides, and various other natural products. There is a short section on the use of MALDI-TOF mass spectrometry for the study of enzymes involved in glycan processing, a section on industrial processes, particularly the development of biopharmaceuticals and a section on the use of MALDI-MS to monitor products of chemical synthesis of carbohydrates. Large carbohydrate-protein complexes and glycodendrimers are highlighted in this final section.
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Affiliation(s)
- David J Harvey
- Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford OX1 3QU, UK.
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15
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Dondoni A. Heterocycles in organic synthesis: thiazoles and triazoles as exemplar cases of synthetic auxiliaries. Org Biomol Chem 2010; 8:3366-85. [PMID: 20505853 DOI: 10.1039/c002586k] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This Perspective article illustrates the key role of thiazole and triazole in the work carried out in the author's laboratory over three decades and deals with the synthesis of carbohydrate-based bioactive molecules. The first part reports on the development of synthetic strategies exploiting the use of various thiazole-based reagents and the ready conversion of thiazole into the formyl group. After describing the chain elongation of monosaccharides into higher-carbon homologues, the synthesis of target natural and non-natural carbohydrates, or their ultimate precursors, is presented. These include some sphingoids, neuraminic and destomic acids, lincosamine, various 3-deoxy-2-ulosonic acids (KDO, KDN, iso-Neu4Ac), iminosugars (nojirimycin, mannojirimycin, galactostatin) and homoazasugars. Also prepared were the disaccharide subunit of bleomycin A(2) and the side-chain of taxol and taxotere.((R)) The use of 1,2,3-triazole is discussed in the second part of the paper. The service of this heterocycle that is easily formed by the Cu(i)-catalyzed azide-alkyne cycloaddition (CuAAC) is considered in light of its use as a robust linker (a sort of keystone) of complex and diverse molecular architectures. Thus, the assembly of triazole-linked glycosyl amino acids, non-natural nucleotides, 1,6-oligomannosides, sialoside clusters on calixarene platfom via CuAAC is described and the biological relevance of these compounds is discussed in brief.
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Affiliation(s)
- Alessandro Dondoni
- Dipartimento di Chimica, Laboratorio di Chimica Organica, Università di Ferrara, Via L. Borsari 46, I-44100 Ferrara, Italy.
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Lammerts van Bueren A, Ardèvol A, Fayers-Kerr J, Luo B, Zhang Y, Sollogoub M, Blériot Y, Rovira C, Davies GJ. Analysis of the reaction coordinate of alpha-L-fucosidases: a combined structural and quantum mechanical approach. J Am Chem Soc 2010; 132:1804-6. [PMID: 20092273 DOI: 10.1021/ja908908q] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The enzymatic hydrolysis of alpha-L-fucosides is of importance in cancer, bacterial infections, and fucosidosis, a neurodegenerative lysosomal storage disorder. Here we show a series of snapshots along the reaction coordinate of a glycoside hydrolase family GH29 alpha-L-fucosidase unveiling a Michaelis (ES) complex in a (1)C(4) (chair) conformation and a covalent glycosyl-enzyme intermediate in (3)S(1) (skew-boat). First principles metadynamics simulations on isolated alpha-L-fucose strongly support a (1)C(4)<-->(3)H(4)<-->(3)S(1) conformational itinerary for the glycosylation step of the reaction mechanism and indicate a strong "preactivation" of the (1)C(4) complex to nucleophilic attack as reflected by free energy, C1-O1/O5-C1 bond length elongation/reduction, C1-O1 bond orientation, and positive charge development around the anomeric carbon. Analysis of an imino sugar inhibitor is consistent with tight binding of a chair-conformed charged species.
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17
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Pfrengle F, Lentz D, Reissig HU. A New Ring Closure Approach to Enantiopure 3,6-Dihydro-2H-pyrans: Stereodivergent Access to Carbohydrate Mimetics. Org Lett 2009; 11:5534-7. [DOI: 10.1021/ol902354f] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Fabian Pfrengle
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustr. 3, 14195 Berlin, Germany
| | - Dieter Lentz
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustr. 3, 14195 Berlin, Germany
| | - Hans-Ulrich Reissig
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustr. 3, 14195 Berlin, Germany
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Jenkinson SF, Booth KV, Newberry S, Fleet GWJ, Izumori K, Morimoto K, Nash RJ, Jones L, Watkin DJ, Thompson AL. 2,6-Dide-oxy-2,6-imino-l-glycero-d-ido-heptitol. Acta Crystallogr Sect E Struct Rep Online 2009; 65:o1755-6. [PMID: 21583466 PMCID: PMC2977159 DOI: 10.1107/s1600536809025045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2009] [Accepted: 06/29/2009] [Indexed: 11/25/2022]
Abstract
The title molecule, C7H15NO5, the major product from selective enzymatic oxidation followed by hydrogenolysis of the corresponding azidoheptitol, was found by X-ray crystallography to exisit in a chair conformation with three axial hydroxyl groups. One of the hydroxymethyl groups is disordered over two sets of sites in a 0.590 (3):0.410 (3) ratio. In the crystal, O—H⋯O, O—H⋯(O,O), O—H⋯N and N—H⋯O hydrogen bonding occurs.
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Hong Z, Liu L, Sugiyama M, Fu Y, Wong CH. Concise synthesis of iminocyclitols via Petasis-type aminocyclization. J Am Chem Soc 2009; 131:8352-3. [PMID: 19530721 PMCID: PMC2900252 DOI: 10.1021/ja901656e] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A two-step method has been developed to synthesize several biologically important iminocyclitols in ca. 44-60% yields by using Petasis-type condensation. The method is very general and operationally simple, affording a series of iminocyclitols from easily available sugar derivatives. Unexpected diastereoselectivities are observed, suggesting that the condensation may proceed through a five- or six-membered cyclic iminium ion intermediate.
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Affiliation(s)
- Zhangyong Hong
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA
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Goti A, Marradi M, Corsi M, Cicchi S, Bonanni M, Cardona F. N-Glycosylhydroxylamines as Masked Polyhydroxylated Chiral Nitrones in Cycloaddition Reactions: An Access to Pyrrolizidines. HETEROCYCLES 2009. [DOI: 10.3987/com-08-s(d)59] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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