Ring Opening of 2,5-Didehydrothiophene: Matrix Photochemistry of C4H2S Isomers

Radiation-Driven Destruction of Thiophene and Methyl-Substituted Thiophenes

Thiophene and two derivatives (2-methylthiophene and 3-methylthiophene) have been detected on the surface of Mars with the Sample Analysis at Mars instrument suite onboard NASA's Curiosity rover. Thiophene could serve as a secondary chemical biosignature since the secondary biosynthesis of thiophene is considered an important production pathway. However, it is critical to understand the abiotic formation and destruction of thiophene and its derivatives since these pathways could affect the molecules' stabilities on planetary surfaces over geological timescales. Here, we present the radiolytic destruction kinetics of thiophene, 2-methylthiophene, and 3-methylthiophene as single-component ices and when diluted in water ice at low temperatures. Using infrared spectroscopy, we determined the destruction rate constants and extrapolated our radiolytic half-lives to the surface of Mars, assuming the measured and modeled surface dose rates. We found that our rate constants strongly depend on temperature and presence of water ice. Based on our determined radiolytic half-life for thiophene under conditions most similar to those of thiophene groups in Martian macromolecules, we expect thiophene to be stable on the surface for significantly longer than the Martian surface exposure age of sites in Gale crater where thiophenes have been detected.

Infrared-Spectroscopic Study of (4-Methylpent-3-en-1-ynyl)methylthiocarbene, Its Photochemical Transformations, and Reactions in an Argon Matrix

The first representative of singlet carbenes bearing both ethynyl and methylthio groups at the carbene center, (4-methylpent-3-en-1-ynyl)methylthiocarbene, has been generated in a low-temperature Ar matrix upon UV photolysis of 3,3-dimethyl-5-methylthioethynyl-3H-pyrazole and detected by FTIR spectroscopy. The generation of the carbene proceeds via intermediate (3-diazo-5-methylhex-4-en-1-ynyl)methylsulfane. The comparison of FTIR spectroscopy data with the results of quantum chemical calculations (B3LYP/aug-cc-pVTZ) and NRT analysis shows that (4-methylpent-3-en-1-ynyl)methylthiocarbene has a singlet ground state with the localization of the unpaired spins on the carbon atom in the α-position to methylthio moiety. Two major pathways of further phototransformation of the studied carbene have been found. One of them produces photochemically stable thioketone (S═CMe-C≡C-CH═CMe₂) as a result of methyl group migration from sulfur to the neighboring carbon atom, and the other one leads to the formation of labile thioketene (S═C═C(Me)-CH═CH-CMe═CH₂). Ability of (4-methylpent-3-en-1-ynyl)methylthiocarbene to insert into the H-Cl bond was established, which additionally confirms the singlet nature of this intermediate.

HSP60 is required for stemness and proper differentiation of mouse embryonic stem cells

Embryonic stem cells (ESCs) are metabolically distinct from their differentiated counterparts. ESC mitochondria are less complex and fewer in number than their differentiated progeny. However, few studies have examined the proteins responsible for differences in mitochondrial structure and function between ESCs and somatic cells. Therefore, in this study, we aimed to investigate the differences between mitochondrial proteins in these two cell types. We demonstrate that HSP60 is more abundant in mouse ESC mitochondria than in mouse embryonic fibroblasts. Depletion of HSP60 inhibited mouse ESC proliferation and self-renewal, characterized by decreased OCT4 expression. HSP60 depletion also enhanced apoptosis during mouse ESC differentiation into embryoid bodies. Our results suggest that HSP60 expression has an essential role in ESC self-renewal and survival of differentiated cells from ESCs.

Does a Nitrogen Lone Pair Lead to Two Centered-Three Electron (2c-3e) Interactions in Pyridyl Radical Isomers?

Each of the three isomeric pyridyl radicals (2-, 3-, and 4-dehydropyridines) contains a lone pair and an unpaired electron. As a result, a potential two centered-three electron interaction between the radical electron and the lone pair through-space (TS) and/or through-bond (TB) can exist that may influence the stability of the radicals. Due to the change in geometrical positions relative to each other, the strength of interaction can be varied. In this study, we investigated the structural and stability aspects of pyridyl radical isomers with a major emphasis on the interaction of a nitrogen lone pair with the radical center. In order to obtain evidence for such interactions, protonated and N-oxide analogues of the corresponding isomeric pyridyl radicals have been considered in such a way to understand the consequences due to unavailability of the lone pair. Similarly, electron attachment and detachment energies at the radical center (vertical detachment energy, VDE, of corresponding anions and vertical ionization energy, VIE, of radical isomers) have been calculated to find out the interaction trend upon modification at the radical center. Different levels of theory including (U)B3LYP/cc-pVTZ, (U)M06/cc-pVTZ, CBS-QB3, single-point energy calculations at (U)CCSD(T)/cc-pVTZ, and multireference CASSCF/cc-pVTZ methods have been employed in this regard. A closer inspection of geometries, relative stability order, spin density, electrostatic potential, molecular orbitals, NBO analysis, and vibrational analysis have showed a strong and stabilizing TS interaction between the radical center and the lone pair in the case of the 2-pyridyl radical. On the other hand, the 4-pyridyl radical showed stabilizing interactions only via TB coupling, whereas the TS interaction is nonexistent. Despite the presence of both interactions in the case of the 3-pyridyl radical, their overall influence is less effective toward stability.

Positive and negative photoion spectroscopy study of monochlorothiophenes

Photolysis dynamics of monochlorothiophenes (2- and 3-chlorothiophenes) is investigated using positive and negative photoion mass spectrometry combined with the synchrotron vacuum ultraviolet radiation. A dozen of the daughter cations are observed in the time-of-flight mass spectra, and their appearance energies are determined by the photoion efficiency spectroscopy measurements. At the energetic threshold, the concerted process rather than a stepwise reaction for C(4)H(3)SCl(+) → C(2)HSCl(+) + C(2)H(2) and the ring-open isomers of the dehydrogenated thiophene cations (C(4)H(3)S(+) and C(4)H(2)S(+)) formed in C(4)H(3)SCl(+) → C(4)H(3)S(+) + Cl and C(4)H(2)S(+) + HCl are proposed on the basis of the B3LYP/6-311+G(3df,3pd) calculations. The chlorine anion (Cl(-)) is observed as the product of the photoion-pair dissociations in the energy range of 10.70-22.00 eV. A set of valence-to-Rydberg state transitions 12a' → np (n = 6, 7, 8, 9, 10, etc.) and several series of vibrational excitations are tentatively assigned in the Cl(-) spectrum of 2-chlorothiophene in the lower energy range of 10.90-12.00 eV.