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Jang HJ, Lee S, An BJ, Song G, Jeon HG, Jeong KS. Tweezer-type binding cavity formed by the helical folding of a carbazole-pyridine oligomer. Chem Commun (Camb) 2022; 58:1410-1413. [PMID: 34994755 DOI: 10.1039/d1cc06569f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
We have synthesised a new aromatic foldamer based on the carbazole-pyridine oligomers that adopt helical conformations via dipole-dipole interactions and π-stacking between two ethynyl bond-linked monomers. This foldamer scaffold has been further modified into a synthetic receptor with a tweezer-type binding cavity outside the helical backbone upon folding, in contrast to most aromatic foldamers with internal binding cavities. The tweezer-type cavity is composed of two parallel pyrenyl planes, allowing for the intercalation of a naphthalenediimide guest via π-stacking and CH⋯O interactions, as demonstrated using its 1H NMR spectra and X-ray crystal structure.
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Affiliation(s)
- Hye Jin Jang
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea.
| | - Seungwon Lee
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea.
| | - Byung Jun An
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea.
| | - Geunmoo Song
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea.
| | - Hae-Geun Jeon
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea.
| | - Kyu-Sung Jeong
- Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea.
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2
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Nazarski RB. Summary of DFT calculations coupled with current statistical and/or artificial neural network (ANN) methods to assist experimental NMR data in identifying diastereomeric structures. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2020.152548] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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3
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Edgar M, Zeinali F, Mojally M, Hughes C, Riaz S, Weaver GW. NMR spectral analysis of second-order 19F-19F, 19F-1H and 13C-19F coupling constants in pentafluorobenzene and tetrafluoro-4-(morpholino)pyridine using ANATOLIA. J Fluor Chem 2019. [DOI: 10.1016/j.jfluchem.2019.04.018] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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4
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Chaudhari SR, Suryaprakash N. Pure shift NMR approach for fast and accurate extraction of heteronuclear couplings. RSC Adv 2014. [DOI: 10.1039/c4ra01436g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
An NMR experiment for the direct determination of heteronuclear couplings from the severely overlapped 1H NMR spectrum.
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Affiliation(s)
- Sachin Rama Chaudhari
- NMR Research Centre
- Solid State and Structural Chemistry Unit
- Indian Institute of Science
- Bangalore-560012, India
| | - N. Suryaprakash
- NMR Research Centre
- Solid State and Structural Chemistry Unit
- Indian Institute of Science
- Bangalore-560012, India
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5
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Parella T, Espinosa JF. Long-range proton-carbon coupling constants: NMR methods and applications. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2013; 73:17-55. [PMID: 23962883 DOI: 10.1016/j.pnmrs.2013.07.001] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Revised: 07/03/2013] [Accepted: 07/03/2013] [Indexed: 06/02/2023]
Abstract
A general review of novel NMR methods to measure heteronuclear long-range proton-carbon coupling constants ((n)JCH; n>1) in small molecules is made. NMR experiments are classified in terms of NMR pulse scheme and cross-peak nature. A discussion about simplicity, general applicability and accuracy for each particular NMR experiment is presented and exemplified. Important aspects such as the sign determination and measurement of very small coupling values involving protonated and non-protonated carbons as well as the complementarity between different experiments are also discussed. Finally, a compilation of applications in structural and conformational analysis of different types of molecules since 2000 is surveyed.
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Affiliation(s)
- Teodor Parella
- Servei de Ressonància Magnètica Nuclear, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.
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Butts CP, Heise B, Tatolo G. SelEXSIDE: Fast and Easy Measurement of Multiple-Bond 1H,13C Coupling Constants for Stereochemical Analysis. Org Lett 2012; 14:3256-9. [DOI: 10.1021/ol301078q] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Craig P. Butts
- School of Chemistry, Cantocks Close, University of Bristol, Bristol, BS8 1TS, U.K., and Agilent Technologies UK Ltd., 6 Mead Road, Yarnton, Oxford, OX5 1QU, U.K
| | - Bert Heise
- School of Chemistry, Cantocks Close, University of Bristol, Bristol, BS8 1TS, U.K., and Agilent Technologies UK Ltd., 6 Mead Road, Yarnton, Oxford, OX5 1QU, U.K
| | - Godiraone Tatolo
- School of Chemistry, Cantocks Close, University of Bristol, Bristol, BS8 1TS, U.K., and Agilent Technologies UK Ltd., 6 Mead Road, Yarnton, Oxford, OX5 1QU, U.K
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Chaudhari SR, Nath N, Suryaprakash N. C-HETSERF: distinction of cis/trans-isomers and measurement of long range couplings between chemically equivalent nuclei in polycyclic aromatic hydrocarbons. RSC Adv 2012. [DOI: 10.1039/c2ra21898d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Jonsson KHM, Säwén E, Widmalm G. Studies on the conformational flexibility of α-l-rhamnose-containing oligosaccharides using 13C-site-specific labeling, NMR spectroscopy and molecular simulations: implications for the three-dimensional structure of bacterial rhamnan polysaccharides. Org Biomol Chem 2012; 10:2453-63. [DOI: 10.1039/c2ob06924e] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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9
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Espinosa JF, Vidal P, Parella T, Gil S. Measurement of long-range proton-carbon coupling constants from pure in-phase 1D multiplets. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2011; 49:502-507. [PMID: 21751246 DOI: 10.1002/mrc.2782] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2011] [Revised: 05/19/2011] [Accepted: 05/26/2011] [Indexed: 05/31/2023]
Abstract
The SELective INverse detection of carbon-proton CORrelation pulse sequence that yields a 1D spectrum of a proton directly bonded to a selected carbon resonance has been converted into a proton and carbon double-selective variant that provides a (1)H spectrum of a selected proton that is long-range coupled to a specific carbon resonance. The resulting 1D proton multiplet exhibits a pure absorptive in-phase lineshape for precise measurement of specific long-range proton-carbon coupling constants in small organic molecules at natural abundance.
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Affiliation(s)
- Juan F Espinosa
- Centro de Investigación Lilly, Avda. de la Industria 30, 28108-Alcobendas, Madrid, Spain.
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Duncan D, Hope EG, Singh K, Stuart AM. A recyclable perfluoroalkylated PCP pincer palladium complex. Dalton Trans 2011; 40:1998-2005. [DOI: 10.1039/c0dt01004a] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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11
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Synthesis and conformational analysis of carbasugar bioisosteres of α-l-iduronic acid and its methyl glycoside. Carbohydr Res 2010; 345:984-93. [DOI: 10.1016/j.carres.2010.03.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2009] [Revised: 02/15/2010] [Accepted: 03/01/2010] [Indexed: 11/18/2022]
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12
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Kövér KE, Szilágyi L, Batta G, Uhrín D, Jiménez-Barbero J. Biomolecular Recognition by Oligosaccharides and Glycopeptides: The NMR Point of View. COMPREHENSIVE NATURAL PRODUCTS II 2010:197-246. [DOI: 10.1016/b978-008045382-8.00193-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2023]
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Espindola APDM, Crouch R, DeBergh JR, Ready JM, MacMillan JB. Deconvolution of Complex NMR Spectra in Small Molecules by Multi Frequency Homonuclear Decoupling (MDEC). J Am Chem Soc 2009; 131:15994-5. [DOI: 10.1021/ja907110e] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ana Paula D. M. Espindola
- Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-9038, and Applications Laboratory, Varian, Inc., Palo Alto, California 94303
| | - Ronald Crouch
- Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-9038, and Applications Laboratory, Varian, Inc., Palo Alto, California 94303
| | - John R. DeBergh
- Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-9038, and Applications Laboratory, Varian, Inc., Palo Alto, California 94303
| | - Joseph M. Ready
- Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-9038, and Applications Laboratory, Varian, Inc., Palo Alto, California 94303
| | - John B. MacMillan
- Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-9038, and Applications Laboratory, Varian, Inc., Palo Alto, California 94303
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Nolis P, Gil S, Espinosa JF, Parella T. Improved NMR methods for the direct 13C-satellite-selective excitation in overlapped 1H-NMR spectra. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2009; 47:121-132. [PMID: 18991319 DOI: 10.1002/mrc.2363] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Improved pulsed-field gradient echo methods are presented and discussed for the direct selective excitation of the (13)C-satellite lines in overcrowded (1)H NMR spectra of small molecules. Sensitivity enhancements in (13)C spin-state selection can be achieved by combining multiple-proton-frequency excitation and Hadamard phase encoding. Several satellite-selective (SATSEL) NMR experiments are proposed and exemplified by measuring the sign and the magnitude of small, long-range proton-carbon coupling constants for (1)H resonances showing several levels of signal overlapping.
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Affiliation(s)
- Pau Nolis
- Servei de Ressonància Magnètica Nuclear, Universitat Autònoma de Barcelona, E-08193, Bellaterra, Barcelona, Spain
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15
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Kwan EE, Huang SG. Structural Elucidation with NMR Spectroscopy: Practical Strategies for Organic Chemists. European J Org Chem 2008. [DOI: 10.1002/ejoc.200700966] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Eugene E. Kwan
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA, Fax: +1‐617‐495‐1460
| | - Shaw G. Huang
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA, Fax: +1‐617‐495‐1460
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Espinosa JF, Parella T. First experimental determination of two-bond 13C isotopic effects on 1H NMR chemical shifts. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2008.02.097] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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