1
|
Soro DM, Roque JB, Rackl JW, Park B, Payer S, Shi Y, Ruble JC, Kaledin AL, Baik MH, Musaev DG, Sarpong R. Photo- and Metal-Mediated Deconstructive Approaches to Cyclic Aliphatic Amine Diversification. J Am Chem Soc 2023; 145:11245-11257. [PMID: 37171220 DOI: 10.1021/jacs.3c01318] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Described herein are studies toward the core modification of cyclic aliphatic amines using either a riboflavin/photo-irradiation approach or Cu(I) and Ag(I) to mediate the process. Structural remodeling of cyclic amines is explored through oxidative C-N and C-C bond cleavage using peroxydisulfate (persulfate) as an oxidant. Ring-opening reactions to access linear aldehydes or carboxylic acids with flavin-derived photocatalysis or Cu salts, respectively, are demonstrated. A complementary ring-opening process mediated by Ag(I) facilitates decarboxylative Csp3-Csp2 coupling in Minisci-type reactions through a key alkyl radical intermediate. Heterocycle interconversion is demonstrated through the transformation of N-acyl cyclic amines to oxazines using Cu(II) oxidation of the alkyl radical. These transformations are investigated by computation to inform the proposed mechanistic pathways. Computational studies indicate that persulfate mediates oxidation of cyclic amines with concomitant reduction of riboflavin. Persulfate is subsequently reduced by formal hydride transfer from the reduced riboflavin catalyst. Oxidation of the cyclic aliphatic amines with a Cu(I) salt is proposed to be initiated by homolysis of the peroxy bond of persulfate followed by α-HAT from the cyclic amine and radical recombination to form an α-sulfate adduct, which is hydrolyzed to the hemiaminal. Investigation of the pathway to form oxazines indicates a kinetic preference for cyclization over more typical elimination pathways to form olefins through Cu(II) oxidation of alkyl radicals.
Collapse
Affiliation(s)
- David M Soro
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Jose B Roque
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Jonas W Rackl
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Bohyun Park
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
- Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS), Daejeon 34141, Korea
| | - Stefan Payer
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Yuan Shi
- Discovery Chemistry Research and Technologies, Eli Lilly and Company, Indianapolis, Indiana 46285, United States
| | - J Craig Ruble
- Discovery Chemistry Research and Technologies, Eli Lilly and Company, Indianapolis, Indiana 46285, United States
| | - Alexey L Kaledin
- Cherry L. Emerson Center for Scientific Computation, and Department of Chemistry, Emory University, 1515 Dickey Drive, Atlanta, Georgia 30322, United States
| | - Mu-Hyun Baik
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
- Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS), Daejeon 34141, Korea
| | - Djamaladdin G Musaev
- Cherry L. Emerson Center for Scientific Computation, and Department of Chemistry, Emory University, 1515 Dickey Drive, Atlanta, Georgia 30322, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| |
Collapse
|
2
|
Prabhakaran EN, Reddy DN, Banerjee S. A kinetic method for detecting intramolecular peptide H-bonds. NEW J CHEM 2021. [DOI: 10.1039/d1nj03544d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The current method for the detection of peptide hydrogen bond (PHB) formation places charge donors/acceptors (D/A) at the N-/C-termini of the peptides involved in the putative PHB.
Collapse
Affiliation(s)
- Erode N. Prabhakaran
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, Karnataka, 560012, India
| | - Damodara N. Reddy
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Lucknow, Uttar Pradesh, 226031, India
| | - Shreya Banerjee
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, Karnataka, 560012, India
| |
Collapse
|
3
|
Kikuchi J, Ye H, Terada M. Chiral Phosphoric Acid Catalyzed Enantioselective [4 + 2] Cycloaddition Reaction of α-Fluorostyrenes with Imines. Org Lett 2020; 22:8957-8961. [PMID: 33136411 DOI: 10.1021/acs.orglett.0c03360] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An enantioselective [4 + 2] cycloaddition reaction of α-fluorostyrenes with N-benzoyl imines was demonstrated using a chiral phosphoric acid catalyst. Cycloaddition products having fluorine functionality were formed in high yields with excellent diastereo- and enantioselectivities. Further manipulation of the enantioenriched cycloaddition product with silyl enol ether in the presence of BiCl3 catalyst afforded substitution product with retention of the dihydro-4H-1,3-oxazine framework through selective carbon-fluorine bond cleavage without loss of enantiomeric excess.
Collapse
Affiliation(s)
- Jun Kikuchi
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
| | - Haiting Ye
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
| | - Masahiro Terada
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
| |
Collapse
|
4
|
Ferhati X, Matassini C, Fabbrini MG, Goti A, Morrone A, Cardona F, Moreno-Vargas AJ, Paoli P. Dual targeting of PTP1B and glucosidases with new bifunctional iminosugar inhibitors to address type 2 diabetes. Bioorg Chem 2019; 87:534-549. [PMID: 30928876 DOI: 10.1016/j.bioorg.2019.03.053] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 03/04/2019] [Accepted: 03/18/2019] [Indexed: 10/27/2022]
Abstract
The diffusion of type 2 diabetes (T2D) throughout the world represents one of the most important health problems of this century. Patients suffering from this disease can currently be treated with numerous oral anti-hyperglycaemic drugs, but none is capable of reproducing the physiological action of insulin and, in several cases, they induce severe side effects. Developing new anti-diabetic drugs remains one of the most urgent challenges of the pharmaceutical industry. Multi-target drugs could offer new therapeutic opportunities for the treatment of T2D, and the reported data on type 2 diabetic mice models indicate that these drugs could be more effective and have fewer side effects than mono-target drugs. α-Glucosidases and Protein Tyrosine Phosphatase 1B (PTP1B) are considered important targets for the treatment of T2D: the first digest oligo- and disaccharides in the gut, while the latter regulates the insulin-signaling pathway. With the aim of generating new drugs able to target both enzymes, we synthesized a series of bifunctional compounds bearing both a nitro aromatic group and an iminosugar moiety. The results of tests carried out both in vitro and in a cell-based model, show that these bifunctional compounds maintain activity on both target enzymes and, more importantly, show a good insulin-mimetic activity, increasing phosphorylation levels of Akt in the absence of insulin stimulation. These compounds could be used to develop a new generation of anti-hyperglycemic drugs useful for the treatment of patients affected by T2D.
Collapse
Affiliation(s)
- Xhenti Ferhati
- Department of Chemistry 'Ugo Schiff', University of Firenze, via della Lastruccia 3-13, Sesto Fiorentino, (FI), Italy
| | - Camilla Matassini
- Department of Chemistry 'Ugo Schiff', University of Firenze, via della Lastruccia 3-13, Sesto Fiorentino, (FI), Italy
| | - Maria Giulia Fabbrini
- Department of Chemistry 'Ugo Schiff', University of Firenze, via della Lastruccia 3-13, Sesto Fiorentino, (FI), Italy
| | - Andrea Goti
- Department of Chemistry 'Ugo Schiff', University of Firenze, via della Lastruccia 3-13, Sesto Fiorentino, (FI), Italy; Associated with Consorzio Interuniversitario Nazionale di ricerca in Metodologie e Processi Innovativi di Sintesi (CINMPIS), Italy
| | - Amelia Morrone
- Paediatric Neurology Unit and Laboratories, Neuroscience Department, Meyer Children's Hospital, and Department of Neurosciences, Pharmacology and Child Health. University of Florence, Viale Pieraccini n. 24, 50139 Firenze, Italy
| | - Francesca Cardona
- Department of Chemistry 'Ugo Schiff', University of Firenze, via della Lastruccia 3-13, Sesto Fiorentino, (FI), Italy; Associated with Consorzio Interuniversitario Nazionale di ricerca in Metodologie e Processi Innovativi di Sintesi (CINMPIS), Italy.
| | - Antonio J Moreno-Vargas
- Departamento de Química Orgánica, Facultad de Química, Universidad de Sevilla, n/Prof. García González 1, E-41012 Sevilla, Spain
| | - Paolo Paoli
- Department of Experimental and Clinical Biomedical Sciences, University of Florence, Viale Morgagni 50, 50134 Florence, Italy.
| |
Collapse
|
5
|
Roque JB, Kuroda Y, Göttemann LT, Sarpong R. Deconstructive diversification of cyclic amines. Nature 2018; 564:244-248. [PMID: 30382193 PMCID: PMC6317721 DOI: 10.1038/s41586-018-0700-3] [Citation(s) in RCA: 135] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Accepted: 10/23/2018] [Indexed: 12/23/2022]
Abstract
Deconstructive functionalization involves C–C bond cleavage followed by bond construction on one or more of the constituent carbons. For example, ozonolysis1 and olefin metathesis2, 3 have allowed each carbon in C–C double bonds to be viewed as a functional group. Despite the significant advances in deconstructive functionalizations involving scission of C–C double bonds, there are very few methods that achieve C(sp3)–C(sp3) single bond cleavage/functionalization, especially in relatively unstrained cyclic systems. Here, we report a deconstructive strategy to transform saturated nitrogen heterocycles such as piperidines and pyrrolidines, important moities in bioactive molecules, into halogen-containing acyclic amine derivatives through sequential C(sp3)–N/C(sp3)–C(sp3) single bond cleavage followed by C(sp3)–halogen bond formation. The resulting acyclic haloamines serve as versatile intermediates that are transformed into a variety of structural motifs through substitution reactions. In this way, skeletal remodeling of cyclic amines, which constitutes a scaffold hop, can be achieved. The value of this deconstructive strategy has been demonstrated through the late-stage diversification of proline-containing peptides.
Collapse
Affiliation(s)
- Jose B Roque
- Department of Chemistry, University of California, Berkeley, CA, USA
| | - Yusuke Kuroda
- Department of Chemistry, University of California, Berkeley, CA, USA
| | - Lucas T Göttemann
- Department of Chemistry, University of California, Berkeley, CA, USA
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, CA, USA.
| |
Collapse
|
6
|
Muratore ME, Konovalov AI, Armengol-Relats H, Echavarren AM. Diastereospecific Gold(I)-Catalyzed Cyclization Cascade for the Controlled Preparation of N- and N,O-Heterocycles. Chemistry 2018; 24:15613-15621. [PMID: 30066978 DOI: 10.1002/chem.201802770] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Revised: 07/25/2018] [Indexed: 11/11/2022]
Abstract
The reaction of oxime-tethered 1,6-enynes with a cationic gold(I) catalyst demonstrates a great potential for the synthesis of a range of heterocycles in a diastereospecific fashion. The control of the configuration of the oxime and the alkene of the enyne moiety is the key to selectively obtain dihydro-1,2-oxazines, isoxazolines or dihydropyrrole-N-oxides as single diastereoisomers. As supported by DFT calculations, these cascade reactions proceed stepwise, by the intramolecular addition of the O or N atom of the oxime onto cyclopropyl gold(I) carbene intermediates. In this study, a rare [3,3]-sigmatropic rearrangement of nitrones is also observed.
Collapse
Affiliation(s)
- Michael E Muratore
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST), Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Andrey I Konovalov
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST), Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Helena Armengol-Relats
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST), Av. Països Catalans 16, 43007, Tarragona, Spain.,Departament de Química Orgànica i Analítica, Universitat Rovira I Virgili, C/ Marcel⋅lí Domingo s/n, 43007, Tarragona, Spain
| | - Antonio M Echavarren
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST), Av. Països Catalans 16, 43007, Tarragona, Spain.,Departament de Química Orgànica i Analítica, Universitat Rovira I Virgili, C/ Marcel⋅lí Domingo s/n, 43007, Tarragona, Spain
| |
Collapse
|
7
|
Ahmadi M, Moradi L, Sadeghzadeh M. Synthesis of benzamides through direct condensation of carboxylic acids and amines in the presence of diatomite earth@IL/ZrCl4 under ultrasonic irradiation. RESEARCH ON CHEMICAL INTERMEDIATES 2018. [DOI: 10.1007/s11164-018-3592-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
8
|
Development of Environmentally Benign Methods Towards the Synthesis of anti-2,3-dihydro-1,2,3-trisubstituted-1H-naphth[1,2-e][1,3]oxazines Using Brønsted Acidic Catalysts. Catal Letters 2016. [DOI: 10.1007/s10562-015-1678-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
9
|
Tumminakatti S, Reddy DN, Prabhakaran EN. Exploring the consequences of a representative "disallowed" conformation of Aib on a 3₁₀-helical fold. Biopolymers 2014; 104:21-36. [PMID: 25488434 DOI: 10.1002/bip.22599] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2013] [Revised: 11/28/2014] [Accepted: 12/01/2014] [Indexed: 01/24/2023]
Abstract
The structural effects of a representative "disallowed" conformation of Aib on the 3(10)-helical fold of an octapeptidomimetic are explored. The 1D ((1)H, (13)C) & 2D NMR, FT-IR and CD data reveal that the octapeptide 1, adopts a 3(10)-helical conformation in solution, as it does in its crystal structure. The C-terminal methyl carboxylate (CO2Me) of 1 was modified into an 1,3-oxazine (Oxa) functional group in the peptidomimetic 2. This modification results in the stabilization of the backbone of the C-terminal Aib (Aib*-Oxa) of 2, in a conformation (ϕ, ψ = 180, 0) that is natively disallowed to Aib. Consequent to the presence of this natively disallowed conformation, the 3(10)-helical fold is not disrupted in the body of the peptidomimetic 2. But the structural distortions that do occur in 2 are primarily in residues in the immediate vicinity of the natively disallowed conformation, rather than in the whole peptide body. Non-native electronic effects resulting from modifications in backbone functional groups can be at the origin of stabilizing residues in natively disallowed conformations.
Collapse
Affiliation(s)
- Shama Tumminakatti
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560012, Karnataka, India
| | | | | |
Collapse
|
10
|
Tumminakatti S, Reddy DN, Lakshmi AN, Prabhakaran EN. Synthesis of 5,6-dihydro-4H-1,3-thiazine containing peptide mimics from N-(3-hydroxypropyl)thioamides and epimerization studies. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.06.084] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
11
|
Egart B, Czekelius C. Stereoselective bromocyclization of allylated aldoxime ethers. Chem Asian J 2014; 9:2088-91. [PMID: 24956967 DOI: 10.1002/asia.201402234] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Indexed: 11/12/2022]
Abstract
The intramolecular bromoamination of allylated aldoxime ethers leads first to isoxazolidinium salts which then undergo a skeletal rearrangement to form bromo-5,6-dihydro-4H-1,3-oxazines. Aliphatic aldoxime ethers with α-protons undergo multiple brominations before rearrangement.
Collapse
Affiliation(s)
- Boris Egart
- Institute for Chemistry and Biochemistry, Freie Universität Berlin, Takustrasse 3, 14195 Berlin (Germany)
| | | |
Collapse
|
12
|
Thirupathi R, Prabhakaran EN. Estimation of the 2.05 helix type i→i hydrogen bond energy at Aib∗-Oxa motif: an isodesmic approach. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.04.064] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
13
|
Wei Y, Lin S, Xue H, Liang F, Zhao B. Halonium-Initiated C–O Bond Formation via Umpolung of α-Carbon to the Carbonyl: Efficient Access to 5-Amino-3(2H)-furanones. Org Lett 2012; 14:712-5. [DOI: 10.1021/ol203183k] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Ying Wei
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Shaoxia Lin
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Hongxun Xue
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Fushun Liang
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Baozhong Zhao
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| |
Collapse
|
14
|
Reddy DN, Thirupathi R, Prabhakaran EN. Accessing the disallowed conformations of peptides employing amide-to-imidate modification. Chem Commun (Camb) 2011; 47:9417-9. [PMID: 21773612 DOI: 10.1039/c1cc13515e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Selective modification of the C-terminal amide in peptides to dihydrooxazine (a novel stable imidate isostere) by intramolecular nucleophilic cyclo-O-alkylation of the corresponding N-(3-bromopropyl)amides results in constraining of the C-terminal residue in natively disallowed conformations both in crystals and in solution.
Collapse
Affiliation(s)
- Damodara N Reddy
- Department of Organic Chemistry, Indian Institute of Science, CV Raman Avenue, Bangalore, India 560012
| | | | | |
Collapse
|