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Sevmezler S, Çol S, Emirik M, Ceylan D, Baran A. Versatile synthesis of rac‐ and meso‐ hydroxymethyl cyclohexenoids containing phenyl groups: α‐, β‐ Glucosidase activities, inhibition kinetics and molecular docking studies. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Sedat Sevmezler
- Sakarya University: Sakarya Universitesi Department of Chemistry TURKEY
| | - Sümeyye Çol
- Sakarya University: Sakarya Universitesi Department of Chemistry TURKEY
| | - Mustafa Emirik
- Recep Tayyip Erdogan Universitesi Department of Chemistry TURKEY
| | - Davut Ceylan
- Sakarya University: Sakarya Universitesi Faculty of Medicine TURKEY
| | - Arif Baran
- Sakarya Universitesi chemistry sakarya university 54187 sakarya TURKEY
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Karanfil A, Şahin E, Kelebekli L. Synthesis of novel tetrols from syn-bisepoxide: Preparation of halogenated bicyclo[4.2.0] inositols. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131000] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Karakılıç E, Baran Ş, Öğütçü H, Akdemir A, Baran A. rac- and meso-Cyclohexanoids: Their α-, β-glycosidases, antibacterial, antifungal activities, and molecular docking studies. Arch Pharm (Weinheim) 2020; 353:e1900267. [PMID: 31922281 DOI: 10.1002/ardp.201900267] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 11/23/2019] [Accepted: 12/08/2019] [Indexed: 11/12/2022]
Abstract
An efficient and versatile synthesis method has been postulated for hydroxymethylated rac- and meso-cyclohexanoid derivatives. The synthesis of these stereoisomers was achieved easily with traditional methods using hexahydroisobenzofuran 6, prepared from commercially available cis-hydrophthalic anhydride. The study, involving diastereoselective epoxidation and cis-hydroxylation, was conducted to obtain epoxy-, cis-, and trans-diol-furans 7, 8, and 9. After sulfamic acid-catalyzed ring-opening reaction of the epoxide and furan rings, rac- and meso-tetraacetates 14, 15, and 16 were afforded. Hydrolysis of acetate groups with ammonia in absolute methanol yielded the desired tetrols rac-17, meso-18, and meso-19. All structures, after purification by chromatographic methods and elucidation by spectral techniques, were screened against α- and β-glucosidases. Compounds 7, 8, 10, 17, 18, and 19 were also evaluated for their antibacterial and antifungal activity against some selected synthesized compounds with varying degrees of inhibitory effects on the growth of different pathogenic microorganisms by the well-diffusion method. In addition, Saccharomyces cerevisiae α-glucosidase molecular modeling studies were performed for all rac- and meso-compounds 7, 8, 10, 17, 18, and 19.
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Affiliation(s)
- Emel Karakılıç
- Department of Chemistry, Sakarya University, Sakarya, Turkey
| | - Şule Baran
- Department of Biology, Sakarya University, Sakarya, Turkey
| | - Hatice Öğütçü
- Department of Biology, Ahievran University, Kırşehir, Turkey
| | - Atilla Akdemir
- Department of Pharmacology, Bezmialem Vakif University, Istanbul, Turkey
| | - Arif Baran
- Department of Chemistry, Sakarya University, Sakarya, Turkey
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Parella R, Jakkampudi S, Arman H, Zhao JCG. Stereoselective Synthesis of 3-Oxabicyclo[3.3.1]nonan-2-ones via a Domino Reaction Catalyzed by Modularly Designed Organocatalysts. Adv Synth Catal 2019; 361:208-213. [PMID: 31467501 PMCID: PMC6715131 DOI: 10.1002/adsc.201800987] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Indexed: 01/29/2023]
Abstract
A highly stereoselective method for the synthesis of functionalized 3-oxabicyclo[3.3.1]nonan-2-one derivatives with four contiguous stereogenic centers, including one tetrasubstituted stereogenic center, was realized through an organocatalytic domino Michael-hemiacetalization-Michael reaction of (E)-3-aryl-2-nitroprop-2-enols and (E)-7-aryl-7-oxohept-5-enals followed by a PCC oxidation. Using the modularly designed organocatalysts (MDOs) self-assembled from cinchona alkaloid derivatives and amino acids in the reaction media, the title products were obtained in good yields (up to 84%), excellent diastereoselectivities (> 99:1 dr), and high enantioselectivities (up to 96% ee).
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Affiliation(s)
- Ramarao Parella
- Department of Chemistry, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249-0698, USA, Fax: (+1)-210-458-7428; phone: (+1)-210-458-5432
| | - Satish Jakkampudi
- Department of Chemistry, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249-0698, USA, Fax: (+1)-210-458-7428; phone: (+1)-210-458-5432
| | - Hadi Arman
- Department of Chemistry, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249-0698, USA, Fax: (+1)-210-458-7428; phone: (+1)-210-458-5432
| | - John C.-G. Zhao
- Department of Chemistry, University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249-0698, USA, Fax: (+1)-210-458-7428; phone: (+1)-210-458-5432
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Karakılıç E, Durmuş S, Sevmezler S, Şahin O, Baran A. Regio- and stereospecific synthesis of rac-carbasugar-based cyclohexane pentols; Investigations of their α- and β-glucosidase inhibitions. Bioorg Med Chem 2018; 26:4276-4287. [PMID: 30031655 DOI: 10.1016/j.bmc.2018.07.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Revised: 07/11/2018] [Accepted: 07/12/2018] [Indexed: 10/28/2022]
Abstract
In the present study, (3aR,7aS)-1,3,3a,4,7,7a-hexahydroisobenzofuran was submitted to photooxygenation and two isomeric hydroperoxides were successfully obtained. Without any further purification, reduction of the hydroperoxides with titanium tetraisopropoxide catalyzed by dimethyl sulfide gave two alcohol isomers in high yields. After acetylation of alcohol with Ac2O in pyridine, epoxidation reaction of formed monoacetates with m-CPBA, then chromatographed and followed by hydrolysis of the acetate groups with NH3 in CH3OH resulted in the formation of epoxy alcohol isomers respectively. These epoxy alcohol isomers were subjected to trans-dihydroxylation reaction with acid (H2SO4) in the presence of water to afford triols. Acetylation of the free hydroxyl groups produced benzofuran triacetates in high yields. Ring-opening reaction of furan triacetates with sulfamic acid catalyzed in the presence of acetic acid/acetic anhydrate and subsequently hydrolysis of the acetate groups with ammonia gave the targeted cyclohexane carbasugar-based pentols. All products were separated and purified by chromatographic and crystallographic methods. Structural analyses of all compounds were conducted by spectral techniques including NMR and X-ray analyses. The biological inhibition activity of the target compounds was tested against glycosidase enzymes, α- and β-glucosidase.
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Affiliation(s)
- Emel Karakılıç
- Department of Chemistry, Sakarya University, 54187 Sakarya, Turkey
| | - Sümeyye Durmuş
- Department of Chemistry, Sakarya University, 54187 Sakarya, Turkey
| | - Sedat Sevmezler
- Department of Chemistry, Sakarya University, 54187 Sakarya, Turkey
| | - Onur Şahin
- Application and Research Center, Sinop University, 57000 Sinop, Turkey
| | - Arif Baran
- Department of Chemistry, Sakarya University, 54187 Sakarya, Turkey.
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Stereoselective synthesis of new rac-quercitols containing hydroxymethyl groups as glucosidase inhibitors. Bioorg Med Chem Lett 2018; 28:2555-2560. [PMID: 29866516 DOI: 10.1016/j.bmcl.2018.05.034] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Revised: 05/14/2018] [Accepted: 05/16/2018] [Indexed: 11/20/2022]
Abstract
Stereoselective and efficient synthesis of hydroxymethyl-substituted rac-quercitols (13-15) was achieved, starting from cis-furan (Kobayashi, 2008) with photooxygenation reaction, which is readily available by the reduction of cis-phtalic anhydride. α- and β-Glucosidase enzyme activity of the target molecules was evaluated and good inhibitor activity was seen. One- and two-dimensional NMR spectroscopy, IR spectroscopy and X-ray crystallography were utilized in the structure characterization of products.
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Yaremenko IA, Vil’ VA, Demchuk DV, Terent’ev AO. Rearrangements of organic peroxides and related processes. Beilstein J Org Chem 2016; 12:1647-748. [PMID: 27559418 PMCID: PMC4979652 DOI: 10.3762/bjoc.12.162] [Citation(s) in RCA: 128] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2016] [Accepted: 07/14/2016] [Indexed: 12/17/2022] Open
Abstract
This review is the first to collate and summarize main data on named and unnamed rearrangement reactions of peroxides. It should be noted, that in the chemistry of peroxides two types of processes are considered under the term rearrangements. These are conventional rearrangements occurring with the retention of the molecular weight and transformations of one of the peroxide moieties after O-O-bond cleavage. Detailed information about the Baeyer-Villiger, Criegee, Hock, Kornblum-DeLaMare, Dakin, Elbs, Schenck, Smith, Wieland, and Story reactions is given. Unnamed rearrangements of organic peroxides and related processes are also analyzed. The rearrangements and related processes of important natural and synthetic peroxides are discussed separately.
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Affiliation(s)
- Ivan A Yaremenko
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
| | - Vera A Vil’
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
| | - Dmitry V Demchuk
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
| | - Alexander O Terent’ev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
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Yilmaz Ö, Şimşek Kuş N, Küce P, Coral G, Çelik A, Gültekin MS. Simple and convenient preparation of some bicyclic alcohols and epoxide derivatives: promising antibiotic activities of (rac)-dimethyl 3,8-dioxatricyclo[3.2.1.02,4]oct-6-ene-6,7-dicarboxylate. Med Chem Res 2015. [DOI: 10.1007/s00044-015-1324-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Ecer K, Salamci E. Efficient and shortcut syntheses of some novel eight-membered ring cyclitols starting from cycloocta-1,3-diene. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.08.060] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Aydin G, Ally K, Aktaş F, Şahin E, Baran A, Balci M. Synthesis and α-Glucosidase and α-Amylase Inhibitory Activity Evaluation of Azido- and Aminocyclitols. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402762] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Synthesis of branched carbasugars via photooxygenation and manganese(III) acetate free radical cyclization. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.05.069] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Baran A, Aydin G, Savran T, Sahin E, Balci M. Trisequential Photooxygenation Reaction: Application to the Synthesis of Carbasugars. Org Lett 2013; 15:4350-3. [DOI: 10.1021/ol401823m] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Arif Baran
- Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and Department of Chemistry, Middle East Technical University, 06800 Ankara, Turkey
| | - Gokay Aydin
- Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and Department of Chemistry, Middle East Technical University, 06800 Ankara, Turkey
| | - Tahir Savran
- Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and Department of Chemistry, Middle East Technical University, 06800 Ankara, Turkey
| | - Ertan Sahin
- Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and Department of Chemistry, Middle East Technical University, 06800 Ankara, Turkey
| | - Metin Balci
- Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and Department of Chemistry, Middle East Technical University, 06800 Ankara, Turkey
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Hong BC, Lan DJ, Dange NS, Lee GH, Liao JH. Organocatalytic Enantioselective Michael-Henry Acetalization of Glutaraldehyde and 3-Aryl-2-nitroprop-2-enols: A Facile Entry to 3-Oxabicyclo[3.3.1]nonan-2-ones with Four Consecutive Stereogenic Centers. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201496] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Ekmekci Z, Balci M. Synthesis of a New 2,3-Diaminoconduritol with Conduritol F Structure. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200582] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Baran A, Çambul S, Nebioglu M, Balci M. Design, synthesis, and biological activities of some branched carbasugars: construction of a substituted 6-oxabicyclo[3.2.1]nonane skeleton. J Org Chem 2012; 77:5086-97. [PMID: 22607049 DOI: 10.1021/jo300655p] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Transformation of cyclohexa-2,4-diene-1,2-diylbis(methylene) diacetate to various carbasugars is described. Photooxygenation of a cyclohexadiene derivative gave a bicyclicendoperoxide, which was reduced with thiourea to [2-[(acetyloxy)methyl]cyclohexa-2,4-dien-1-yl]methyl acetate. Epoxidation of the remaining double bond followed by epoxide ring-opening and hydrolysis of the acetate groups gave one of the target hexols. The bicyclic endoperoxide was rearranged to a diepoxide with CoTPP. The diepoxide was reacted with sulfamic acid in acetic anhydride, resulting in the formation of a new branched carbasugar as well as in the formation of cyclitols with a 6-oxabicyclo[3.2.1]nonane skeleton. The mechanism of the formation of the products is discussed. The inhibition activity of six cyclitol derivatives was tested against α-glycosidase.
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Affiliation(s)
- Arif Baran
- Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey.
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