1
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Molas JC, Poag EM, Ellman JA. Synthesis of Monodehydro-Diketopiperazines Enabled by Cp*Rh(III)-Catalyzed Amine-Directed N-H Functionalization. Org Lett 2024; 26:8527-8531. [PMID: 39332014 PMCID: PMC11512471 DOI: 10.1021/acs.orglett.4c03105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/29/2024]
Abstract
A two-step, diversity-building sequence to prepare monodehydro-diketopiperazines from readily accessible materials is reported. Rh(III)-catalyzed, amine-directed N-H functionalization of a variety of α-amino amides with a diazophosphonate ester and subsequent cyclization gives phosphonate-substituted diketopiperazines. A Horner-Wadsworth-Emmons reaction then provides monodehydro-diketopiperazines with high E-alkene selectivity. This transformation was used to incorporate a variety of groups originating from diverse aldehydes and ketones with different steric and electronic properties. Face-selective hydrogenation to diketopiperazines is also disclosed.
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Affiliation(s)
- Jenna C Molas
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Emily M Poag
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Jonathan A Ellman
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
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2
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Tang J, Lu F, Zhang X, Gao Z, Gong S, Zhang E. Backbone-Enabled and Ester Groups Switched δ-C(sp 2)-H Amination/Fluorination: Cyclic Dipeptides Synthesis. Org Lett 2024; 26:5130-5135. [PMID: 38843448 DOI: 10.1021/acs.orglett.4c01540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
Abstract
An efficient and concise strategy for the synthesis of cyclic dipeptides via Pd-catalyzed site-selective δ-C(sp2)-H amination/fluorination and N-to-C cyclization is disclosed. The backbone amides within the dipeptides serves as endogenous directing groups, while the desired products were switched by the C-terminal ester group. This chemistry presents a novel and robust alternative to construct cyclodipeptide fragments.
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Affiliation(s)
- Jian Tang
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
- Shengzhou Innovation Research Institute, Zhejiang Sci-Tech University, Shengzhou 312400, P. R. China
| | - Fengjie Lu
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Xinyi Zhang
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Zhenqi Gao
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Shuo Gong
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Ensheng Zhang
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
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3
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Koshizuka M, Shinoda K, Makino K, Shimada N. Concise Synthesis of 2,5-Diketopiperazines via Catalytic Hydroxy-Directed Peptide Bond Formations. J Org Chem 2023. [PMID: 37125993 DOI: 10.1021/acs.joc.3c00195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
2,5-Diketopiperazines (DKPs) with hydroxymethyl functional groups are essential structures found in many bioactive molecules and functional materials. We have established a simple protocol for the concise synthesis of this type of DKPs through diboronic acid anhydride-catalyzed hydroxy-directed peptide bond formations. The sequential reactions in this report, which consist of three steps, an intermolecular catalytic condensation reaction in which water is the only byproduct, a simple deprotection of the nitrogen-protecting group, and an intramolecular cyclization, enabled the synthesis of functionalized DKPs in high to excellent yields without any intermediate purification. The utility of this protocol has been demonstrated by synthesizing natural products, phomamide and Cyclo(Deala-l-Leu).
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Affiliation(s)
- Masayoshi Koshizuka
- Laboratory of Organic Chemistry for Drug Development and Medical Research Laboratories, Department of Pharmaceutical Sciences, Kitasato University, Tokyo 108-8641, Japan
| | - Kaito Shinoda
- Laboratory of Organic Chemistry for Drug Development and Medical Research Laboratories, Department of Pharmaceutical Sciences, Kitasato University, Tokyo 108-8641, Japan
| | - Kazuishi Makino
- Laboratory of Organic Chemistry for Drug Development and Medical Research Laboratories, Department of Pharmaceutical Sciences, Kitasato University, Tokyo 108-8641, Japan
| | - Naoyuki Shimada
- Laboratory of Organic Chemistry for Molecular Transformations, Department of Chemistry and the Institute of Natural Sciences, Nihon University, Tokyo 156-8550, Japan
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4
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Ye G, Roques J, Solari PL, Den Auwer C, Jeanson A, Brandel J, Charbonnière LJ, Wu W, Simoni É. Structural and Thermodynamics Studies on Polyaminophosphonate Ligands for Uranyl Decorporation. Inorg Chem 2021; 60:2149-2159. [PMID: 33522798 DOI: 10.1021/acs.inorgchem.0c02145] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The development of actinide decorporation agents with high complexation affinity, high tissue specificity, and low biological toxicity is of vital importance for the sustained and healthy development of nuclear energy. After accidental actinide intake, sequestration by chelation therapy to reduce acute damage is considered as the most effective method. In this work, a series of bis- and tetra-phosphonated pyridine ligands have been designed, synthesized, and characterized for uranyl (UO22+) decorporation. Owing to the absorption of the ligand and the luminescence of the uranyl ion, UV-vis spectroscopy and time-resolved laser-induced fluorescence spectroscopy (TRLFS) were used to probe in situ complexation and structure variation of the complexes formed by the ligands with uranyl. Density functional theory (DFT) calculations and X-ray absorption fine structure (XAFS) spectroscopy on uranyl-ligand complexes revealed the coordination geometry around the uranyl center at pH 3 and 7.4. High affinity constants (log K ∼17) toward the uranyl ion were determined by displacement titration. A preliminary in vitro chelation study proves that bis-phosphonated pyridine ligands can remove uranium from calmodulin (CaM) at a low dose and in the short term, which supports further uranyl decorporation applications of these ligands.
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Affiliation(s)
- Gaoyang Ye
- IJCLab CNRS-IN2P3, Université Paris-Saclay, 91405 Orsay, France.,Institute of Nuclear and New Energy Technology, Tsinghua University, 100084 Beijing, China
| | - Jérome Roques
- IJCLab CNRS-IN2P3, Université Paris-Saclay, 91405 Orsay, France
| | | | | | | | - Jérémy Brandel
- IPHC, UMR 7178, Université de Strasbourg/CNRS, F-67000 Strasbourg, France
| | | | - Wangsuo Wu
- Radiochemistry Laboratory, Lanzhou University, 730000 Lanzhou, Gansu, China
| | - Éric Simoni
- IJCLab CNRS-IN2P3, Université Paris-Saclay, 91405 Orsay, France
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5
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Wu T, Pan Z, Xia C. Construction of Spirooxindole Skeleton Through Intramolecular Dieckmann Cyclization. NATURAL PRODUCTS AND BIOPROSPECTING 2017; 7:275-281. [PMID: 28484999 PMCID: PMC5481276 DOI: 10.1007/s13659-017-0131-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2017] [Accepted: 04/30/2017] [Indexed: 06/07/2023]
Abstract
A highly efficient and direct approach was developed to construct the structurally diverse spirooxindole skeleton, which is an important basic motif in natural products. Both the 3,3'-pyrrolidonyl spirooxindoles and spiroindolin-2-one δ-lactones were smoothly obtained by the intramolecular Dieckmann cyclization of oxindoles in excellent yield under mild conditions.
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Affiliation(s)
- Ting Wu
- The Key Laboratory of Chemistry for Natural Products of Guizhou Province, Chinese Academy of Sciences, Guiyang, 55002, China
| | - Zhiqiang Pan
- Key Laboratory of Medicinal Chemistry for Natural Resources, Ministry of Education, School of Chemical Science and Technology, Yunnan University, Kunming, 650091, China
| | - Chengfeng Xia
- Key Laboratory of Medicinal Chemistry for Natural Resources, Ministry of Education, School of Chemical Science and Technology, Yunnan University, Kunming, 650091, China.
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6
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Lim DSW, Lew TTS, Zhang Y. Direct Amidation of N-Boc- and N-Cbz-Protected Amines via Rhodium-Catalyzed Coupling of Arylboroxines and Carbamates. Org Lett 2015; 17:6054-7. [DOI: 10.1021/acs.orglett.5b03061] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Diane S. W. Lim
- Institute of Bioengineering and Nanotechnology, 31
Biopolis Way, The Nanos, Singapore 138669, Singapore
| | - Tedrick T. S. Lew
- Institute of Bioengineering and Nanotechnology, 31
Biopolis Way, The Nanos, Singapore 138669, Singapore
| | - Yugen Zhang
- Institute of Bioengineering and Nanotechnology, 31
Biopolis Way, The Nanos, Singapore 138669, Singapore
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7
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Mercado-Marin EV, Sarpong R. Unified Approach to Prenylated Indole Alkaloids: Total Syntheses of (-)-17-Hydroxy-Citrinalin B, (+)-Stephacidin A, and (+)-Notoamide I. Chem Sci 2015; 6:5048-5052. [PMID: 26417428 PMCID: PMC4583210 DOI: 10.1039/c5sc01977j] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Accepted: 06/18/2015] [Indexed: 12/19/2022] Open
Abstract
A unified strategy for the synthesis of congeners of the prenylated indole alkaloids is presented. This strategy has yielded the first synthesis of the natural product (-)-17-hydroxy-citrinalin B as well as syntheses of (+)-stephacidin A and (+)-notoamide I. An enolate addition to an in situ generated isocyanate was utilized in forging a key bicyclo[2.2.2]diazaoctane moiety, and in this way connected the two structural classes of the prenylated indole alkaloids through synthesis.
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Affiliation(s)
| | - Richmond Sarpong
- Department of Chemistry , University of California–Berkeley , Berkeley , CA 94720 , USA .
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8
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Nsengiyumva O, Hamedzadeh S, McDaniel J, Macho J, Simpson G, Panda SS, Ha K, Lebedyeva I, Faidallah HM, Al-Mohammadi MM, Hall CD, Katritzky AR. A benzotriazole-mediated route to protected marine-derived hetero-2,5-diketopiperazines containing proline. Org Biomol Chem 2015; 13:4399-403. [PMID: 25762208 DOI: 10.1039/c5ob00023h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A procedure for the cyclization of dipeptidoyl benzotriazolides containing proline derivatives promoted by triethylamine under MW activation is introduced. The reaction is general for a variety of dipeptidoyl benzotriazolides and represents a very practical and convenient method for the preparation of Pro- or Hyp-derived 2,5-diketopiperazines (2,5-DKPs) and bis-DKPs with a disulfide linker. This method can be used for the construction of 2,5-DKP compound libraries and for the synthesis of natural products with diketopiperazine cores.
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Affiliation(s)
- Olivier Nsengiyumva
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611-7200, USA.
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9
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Ha K, Lebedyeva I, Li Z, Martin K, Williams B, Faby E, Nasajpour A, Pillai GG, Al-Youbi AO, Katritzky AR. Conformationally Assisted Lactamizations for the Synthesis of Symmetrical and Unsymmetrical Bis-2,5-diketopiperazines. J Org Chem 2013; 78:8510-23. [DOI: 10.1021/jo401235k] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Khanh Ha
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Iryna Lebedyeva
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Zhiliang Li
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Kristin Martin
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Byron Williams
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Eric Faby
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Amir Nasajpour
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Girinath G. Pillai
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
- Institute of Chemistry, University of Tartu, Tartu 50411, Estonia
| | - Abdulrahman O. Al-Youbi
- Chemistry Department, Faculty
of Science, King Abdulaziz University,
Jeddah, 21589 Saudi Arabia
| | - Alan R. Katritzky
- Center for Heterocyclic
Compounds,
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
- Chemistry Department, Faculty
of Science, King Abdulaziz University,
Jeddah, 21589 Saudi Arabia
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