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Crawford CJ, Schultz-Johansen M, Luong P, Vidal-Melgosa S, Hehemann JH, Seeberger PH. Automated Synthesis of Algal Fucoidan Oligosaccharides. J Am Chem Soc 2024; 146:18320-18330. [PMID: 38916244 PMCID: PMC11240576 DOI: 10.1021/jacs.4c02348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/26/2024]
Abstract
Fucoidan, a sulfated polysaccharide found in algae, plays a central role in marine carbon sequestration and exhibits a wide array of bioactivities. However, the molecular diversity and structural complexity of fucoidan hinder precise structure-function studies. To address this, we present an automated method for generating well-defined linear and branched α-fucan oligosaccharides. Our syntheses include oligosaccharides with up to 20 cis-glycosidic linkages, diverse branching patterns, and 11 sulfate monoesters. In this study, we demonstrate the utility of these oligosaccharides by (i) characterizing two endo-acting fucoidan glycoside hydrolases (GH107), (ii) utilizing them as standards for NMR studies to confirm suggested structures of algal fucoidans, and (iii) developing a fucoidan microarray. This microarray enabled the screening of the molecular specificity of four monoclonal antibodies (mAb) targeting fucoidan. It was found that mAb BAM4 has cross-reactivity to β-glucans, while mAb BAM2 has reactivity to fucoidans with 4-O-sulfate esters. Knowledge of the mAb BAM2 epitope specificity provided evidence that a globally abundant marine diatom, Thalassiosira weissflogii, synthesizes a fucoidan with structural homology to those found in brown algae. Automated glycan assembly provides access to fucoidan oligosaccharides. These oligosaccharides provide the basis for molecular level investigations into fucoidan's roles in medicine and carbon sequestration.
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Affiliation(s)
- Conor J Crawford
- Max Planck Institute for Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Mikkel Schultz-Johansen
- Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
- MARUM, Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany
| | - Phuong Luong
- Max Planck Institute for Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
- Institute for Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Silvia Vidal-Melgosa
- Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
- MARUM, Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany
| | - Jan-Hendrik Hehemann
- Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
- MARUM, Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany
| | - Peter H Seeberger
- Max Planck Institute for Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
- Institute for Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
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2
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Tomida H, Matsuhashi T, Tanaka HN, Komura N, Ando H, Imamura A, Ishida H. Indirect synthetic route to α-l-fucosides via highly stereoselective construction of α-l-galactosides followed by C6-deoxygenation. Org Biomol Chem 2020; 18:5017-5033. [PMID: 32573638 DOI: 10.1039/d0ob01128b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We developed an indirect synthetic method for α-l-fucosides. Based on the fact that l-fucose is 6-deoxy-l-galactose, our strategy consists of the stereoselective construction of α-l-galactoside and its conversion to α-l-fucoside via C6-deoxygenation. The formation of α-l-galactoside is strongly directed using 4,6-O-di-tert-butylsilylene(DTBS)-protected l-galactosyl donors. The DTBS-directed α-l-galactosylation showed broad substrate applicability along with excellent coupling yield and α-selectivity. In the C6-deoxygenation of α-l-galactosides, the Barton-McCombie reaction facilitated the conversion to l-fucosides with good yield. To demonstrate the applicability of our method, we synthesized naturally occurring α-l-fucosides.
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Affiliation(s)
- Hirotaka Tomida
- Department of Applied Bioorganic Chemistry, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.
| | - Takuya Matsuhashi
- Department of Applied Bioorganic Chemistry, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.
| | - Hide-Nori Tanaka
- Institute for Glyco-core Research (iGCORE), Tokai National Higher Education and Research System, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan and Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Naoko Komura
- Institute for Glyco-core Research (iGCORE), Tokai National Higher Education and Research System, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan and Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Hiromune Ando
- Institute for Glyco-core Research (iGCORE), Tokai National Higher Education and Research System, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan and Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Akihiro Imamura
- Department of Applied Bioorganic Chemistry, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.
| | - Hideharu Ishida
- Department of Applied Bioorganic Chemistry, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan. and Institute for Glyco-core Research (iGCORE), Tokai National Higher Education and Research System, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan and Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
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3
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Luo T, Zhang Y, Xi J, Lu Y, Dong H. Improved Synthesis of Sulfur-Containing Glycosides by Suppressing Thioacetyl Migration. Front Chem 2020; 8:319. [PMID: 32391332 PMCID: PMC7191076 DOI: 10.3389/fchem.2020.00319] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Accepted: 03/30/2020] [Indexed: 11/18/2022] Open
Abstract
Complex mixtures were often observed when we attempted to synthesize 4-thio- and 2,4-dithio-glycoside derivatives by double parallel and double serial inversion, thus leading to no or low yields of target products. The reason was later found to be that many unexpected side products were produced when a nucleophile substituted the leaving group on the substrate containing the thioacetate group. We hypothesized that thioacetyl migration is prone to occur due to the labile thioacetate group even under weak basic conditions caused by the nucleophile, leading to this result. Therefore, we managed to inhibit the generation of thiol groups from thioacetate groups by the addition of an appropriate amount of conjugate acid/anhydride, successfully improving the synthesis of 4-thio- and 2,4-dithio-glycoside derivatives. The target products which were previously difficult to synthesize, were herein obtained in relatively high yields. Finally, 4-deoxy- and 2,4-dideoxy-glycoside derivatives were efficiently synthesized through the removal of thioacetate groups under UV light, starting from 4-thio- and 2,4-dithio-glycoside derivatives.
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Affiliation(s)
- Tao Luo
- Key Laboratory for Large-Format Battery Materials and System, Ministry of Education, School of Chemistry & Chemical Engineering, Huazhong University of Science and Technology, Wuhan, China
| | - Ying Zhang
- Key Laboratory for Large-Format Battery Materials and System, Ministry of Education, School of Chemistry & Chemical Engineering, Huazhong University of Science and Technology, Wuhan, China
| | - Jiafeng Xi
- Analysis Center of College of Science & Technology, Hebei Agricultural University, Huanghua, China
| | - Yuchao Lu
- Analysis Center of College of Science & Technology, Hebei Agricultural University, Huanghua, China
| | - Hai Dong
- Key Laboratory for Large-Format Battery Materials and System, Ministry of Education, School of Chemistry & Chemical Engineering, Huazhong University of Science and Technology, Wuhan, China
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4
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Abronina PI, Burygin GL, Kononov LO. Syntheses of O-antigen polysaccharide fragments of nitrogen-fixing rhizobacteria of the genus Azospirillum. Russ Chem Bull 2017. [DOI: 10.1007/s11172-016-1472-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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5
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Bols M, Pedersen CM. Silyl-protective groups influencing the reactivity and selectivity in glycosylations. Beilstein J Org Chem 2017; 13:93-105. [PMID: 28228850 PMCID: PMC5301963 DOI: 10.3762/bjoc.13.12] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Accepted: 12/23/2016] [Indexed: 11/26/2022] Open
Abstract
Silyl groups such as TBDPS, TBDMS, TIPS or TMS are well-known and widely used alcohol protective groups in organic chemistry. Cyclic silylene protective groups are also becoming increasingly popular. In carbohydrate chemistry silyl protective groups have frequently been used primarily as an orthogonal protective group to the more commonly used acyl and benzyl protective groups. However, silyl protective groups have significantly different electronic and steric requirements than acyl and alkyl protective groups, which particularly becomes important when two or more neighboring alcohols are silyl protected. Within the last decade polysilylated glycosyl donors have been found to have unusual properties such as high (or low) reactivity or high stereoselectivity. This mini review will summarize these findings.
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Affiliation(s)
- Mikael Bols
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark
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6
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Hagen B, Ali S, Overkleeft HS, van der Marel GA, Codée JDC. Mapping the Reactivity and Selectivity of 2-Azidofucosyl Donors for the Assembly of N-Acetylfucosamine-Containing Bacterial Oligosaccharides. J Org Chem 2017; 82:848-868. [PMID: 28051314 PMCID: PMC5332126 DOI: 10.1021/acs.joc.6b02593] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The synthesis of complex oligosaccharides is often hindered by a lack of knowledge on the reactivity and selectivity of their constituent building blocks. We investigated the reactivity and selectivity of 2-azidofucosyl (FucN3) donors, valuable synthons in the synthesis of 2-acetamido-2-deoxyfucose (FucNAc) containing oligosaccharides. Six FucN3 donors, bearing benzyl, benzoyl, or tert-butyldimethylsilyl protecting groups at the C3-O and C4-O positions, were synthesized, and their reactivity was assessed in a series of glycosylations using acceptors of varying nucleophilicity and size. It was found that more reactive nucleophiles and electron-withdrawing benzoyl groups on the donor favor the formation of β-glycosides, while poorly reactive nucleophiles and electron-donating protecting groups on the donor favor α-glycosidic bond formation. Low-temperature NMR activation studies of Bn- and Bz-protected donors revealed the formation of covalent FucN3 triflates and oxosulfonium triflates. From these results, a mechanistic explanation is offered in which more reactive acceptors preferentially react via an SN2-like pathway, while less reactive acceptors react via an SN1-like pathway. The knowledge obtained in this reactivity study was then applied in the construction of α-FucN3 linkages relevant to bacterial saccharides. Finally, a modular synthesis of the Staphylococcus aureus type 5 capsular polysaccharide repeating unit, a trisaccharide consisting of two FucNAc units, is described.
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Affiliation(s)
- Bas Hagen
- Leiden Institute of Chemistry, Universiteit Leiden , Einsteinweg 55, 2333CC Leiden, The Netherlands
| | - Sara Ali
- Leiden Institute of Chemistry, Universiteit Leiden , Einsteinweg 55, 2333CC Leiden, The Netherlands
| | - Herman S Overkleeft
- Leiden Institute of Chemistry, Universiteit Leiden , Einsteinweg 55, 2333CC Leiden, The Netherlands
| | - Gijsbert A van der Marel
- Leiden Institute of Chemistry, Universiteit Leiden , Einsteinweg 55, 2333CC Leiden, The Netherlands
| | - Jeroen D C Codée
- Leiden Institute of Chemistry, Universiteit Leiden , Einsteinweg 55, 2333CC Leiden, The Netherlands
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7
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Laezza A, Iadonisi A, Castro CD, De Rosa M, Schiraldi C, Parrilli M, Bedini E. Chemical Fucosylation of a Polysaccharide: A Semisynthetic Access to Fucosylated Chondroitin Sulfate. Biomacromolecules 2015; 16:2237-45. [DOI: 10.1021/acs.biomac.5b00640] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Antonio Laezza
- Department
of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S.Angelo, via Cintia 4, I-80126 Napoli, Italy
| | - Alfonso Iadonisi
- Department
of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S.Angelo, via Cintia 4, I-80126 Napoli, Italy
| | - Cristina De Castro
- Department
of Soil, Plant, Environmental, and Animal Production Sciences, University of Naples Federico II, via Università 100, I-80055 Portici, Italy
| | - Mario De Rosa
- Department
of Experimental Medicine, Second University of Naples, via de Crecchio
7, I-80138 Napoli, Italy
| | - Chiara Schiraldi
- Department
of Experimental Medicine, Second University of Naples, via de Crecchio
7, I-80138 Napoli, Italy
| | - Michelangelo Parrilli
- Department
of Biology, University of Naples Federico II, Complesso Universitario Monte S.Angelo, via Cintia 4, I-80126 Napoli, Italy
| | - Emiliano Bedini
- Department
of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S.Angelo, via Cintia 4, I-80126 Napoli, Italy
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8
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Synthesis and binding affinity analysis of positional thiol analogs of mannopyranose for the elucidation of sulfur in different position. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.04.060] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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9
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Christensen HM, Oscarson S, Jensen HH. Common side reactions of the glycosyl donor in chemical glycosylation. Carbohydr Res 2015; 408:51-95. [DOI: 10.1016/j.carres.2015.02.007] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2014] [Revised: 02/12/2015] [Accepted: 02/18/2015] [Indexed: 12/13/2022]
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10
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Rauthu SR, Shiao TC, André S, Miller MC, Madej É, Mayo KH, Gabius HJ, Roy R. Defining the Potential of Aglycone Modifications for Affinity/Selectivity Enhancement against Medically Relevant Lectins: Synthesis, Activity Screening, and HSQC-Based NMR Analysis. Chembiochem 2014; 16:126-39. [DOI: 10.1002/cbic.201402474] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Indexed: 12/28/2022]
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11
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Zhou Y, Zhang X, Ren B, Wu B, Pei Z, Dong H. S-Acetyl migration in synthesis of sulfur-containing glycosides. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.07.014] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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12
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Hargreaves JM, Le Guen Y, Guerreiro C, Descroix K, Mulard LA. Linear synthesis of the branched pentasaccharide repeats of O-antigens from Shigella flexneri 1a and 1b demonstrating the major steric hindrance associated with type-specific glucosylation. Org Biomol Chem 2014; 12:7728-49. [DOI: 10.1039/c4ob01200c] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Shigella flexneri serotypes 1b and 1a are Gram-negative enteroinvasive bacteria causing shigellosis in humans.
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Affiliation(s)
- Jason M. Hargreaves
- Institut Pasteur
- Unité de Chimie des Biomolécules
- 75724 Paris Cedex 15, France
- CNRS UMR3523
- Institut Pasteur
| | - Yann Le Guen
- Institut Pasteur
- Unité de Chimie des Biomolécules
- 75724 Paris Cedex 15, France
- CNRS UMR3523
- Institut Pasteur
| | - Catherine Guerreiro
- Institut Pasteur
- Unité de Chimie des Biomolécules
- 75724 Paris Cedex 15, France
- CNRS UMR3523
- Institut Pasteur
| | - Karine Descroix
- Institut Pasteur
- Unité de Chimie des Biomolécules
- 75724 Paris Cedex 15, France
- CNRS UMR3523
- Institut Pasteur
| | - Laurence A. Mulard
- Institut Pasteur
- Unité de Chimie des Biomolécules
- 75724 Paris Cedex 15, France
- CNRS UMR3523
- Institut Pasteur
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Giuntini F, Bryden F, Daly R, Scanlan EM, Boyle RW. Huisgen-based conjugation of water-soluble porphyrins to deprotected sugars: towards mild strategies for the labelling of glycans. Org Biomol Chem 2014; 12:1203-6. [DOI: 10.1039/c3ob42306a] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Fully deprotected alkynyl-functionalised mono- and oligosaccharides undergo CuAAC-based conjugation with water-soluble porphyrin azides in aqueous environments.
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Affiliation(s)
| | | | - Robin Daly
- School of Chemistry
- Trinity Biomedical Sciences Institute
- Trinity College
- Dublin 2, Ireland
| | - Eoin M. Scanlan
- School of Chemistry
- Trinity Biomedical Sciences Institute
- Trinity College
- Dublin 2, Ireland
| | - Ross W. Boyle
- Department of Chemistry
- University of Hull
- Kingston-upon-Hull, UK
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14
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Daly R, Scanlan EM. An unusual glycosylation product from a partially protected fucosyl donor under silver triflate activation conditions. Org Biomol Chem 2013; 11:8452-7. [DOI: 10.1039/c3ob42073f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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