Synthesis, guest-binding, and reduction-responsive degradation properties of water-soluble cyclophanes having disulfide moieties

Strained thiacyclophanes: Reducing properties and gauge of transannular interactions

The current study involves the investigation of reducing properties of disulfide bonded heteraphanes. The calculated adiabatic electron affinity (AEA) values of heteraphanes are found comparable to that of cystine molecule and are capable of undergoing reversible redox reactions. In aqueous phase, these show high propensity to get reduced. The reaction energies calculated using isodesmic equations reflect the strain associated with the studied thiacyclophane models. Increase in the number of disulfide bonds results in less strain and more stabilization. Through-space transannular interactions in the selected heteraphanes have a decisive influence on the structure stabilization associated with the systems. The results reported in the current study are expected to play a vital role while designing redox driven drug carriers by incorporating these systems in biomolecules.

A disulphide bond-mediated hetero-dimer of a hemoprotein and a fluorescent protein exhibiting efficient energy transfer†

Artificial protein hetero-dimerization is one of the promising strategies to construct protein-based chemical tools. In this work, cytochrome b₅₆₂, an electron transfer hemoprotein, and green fluorescent protein (GFP) mutants with cysteine residues added to their surfaces were conjugated via a pyridyl disulphide-based thiol–disulfide exchange reaction. The eight hetero-dimers, which have cysteine residues at different positions to form the disulphide bonds, were obtained and characterized by gel-electrophoresis, mass spectrometry and size exclusion chromatography. The fluorescence properties of the hetero-dimers were evaluated by fluorescence spectroscopy and fluorescence lifetime measurements. Efficient photoinduced energy transfer from the GFP chromophore to the heme cofactor was observed in each of the hetero-dimers. The energy transfer efficiency is strongly dependent on the cross-linking residues, reaching 96%. Furthermore, the estimated Förster distance and the structure-based maximum possible distances of the donor and acceptor suggest that one of the hetero-dimers has a rigid protein–protein structure with favourable properties for energy transfer. The disulphide bond-mediated protein hetero-dimerization is useful for screening functional protein systems towards further developments.

Hetero-dimerization of a hemoprotein and green fluorescent protein via a thiol–disulphide exchange reaction is achieved. The heterodimer has suitable cross-linking points and displays efficient energy transfer.

Synthesis and Guest-Binding Properties of pH/Reduction Dual-Responsive Cyclophane Dimer

A water-soluble cyclophane dimer having two disulfide groups as a reduction-responsive cleavable bond as well as several acidic and basic functional groups as a pH-responsive ionizable group 1 was successfully synthesized. It was found that 1 showed pH-dependent guest-binding behavior. That is, 1 strongly bound an anionic guest, 6-p-toluidinonaphthalene-2-sulfonate (TNS) with binding constant (K/M⁻¹) for 1:1 host-guest complexes of 9.6 × 10⁴ M⁻¹ at pH 3.8, which was larger than those at pH 7.4 and 10.7 (6.0 × 10⁴ and 2.4 × 10⁴ M⁻¹, respectively), indicating a favorable electrostatic interaction between anionic guest and net cationic 1. What is more, release of the entrapped guest molecules by 1 was easily controlled by pH stimulus. Large favorable enthalpies (ΔH) for formation of host-guest complexes were obtained under the pH conditions employed, suggesting that electrostatic interaction between anionic TNS and 1 was the most important driving force for host-guest complexation. Such contributions of ΔH for formation of host-guest complexes decreased along with increased pH values from acidic to basic solutions. Upon addition of dithiothreitol (DTT) as a reducing reagent to an aqueous PBS buffer (pH 7.4) containing 1 and TNS, the fluorescence intensity originating from the bound guest molecules decreased gradually. A treatment of 1 with DTT gave 2, having less guest-binding affinity by the cleavage of disulfide bonds of 1. Consequently, almost all entrapped guest molecules by 1 were released from the host. Moreover, such reduction-responsive cleavage of 1 and release of bound guest molecules was performed more rapidly in aqueous buffer at pH 10.7.

Theoretical Prediction on a Novel Reduction-Responsive Nanoring Having a Disulfide Group for Facile Encapsulation and Release of Fullerenes C60 and C70

In this work, a novel reduction-responsive disulfide bond-containing cycloparaphenylene nanoring molecule (DSCPP) with a pyriform shape has been designed. In addition, the interactions between the designed nanoring (host) and fullerenes C₆₀ and C₇₀ (guests) were investigated theoretically at the M06-2X/6-31G(d,p) and M06-L/MIDI! levels of theory. By analyzing geometric characteristics and host-guest binding energies, it is revealed that the designed DSCPP is an ideal host molecule of guests C₆₀ and C₇₀. DSCPP presents excellent elastic deformation during the encapsulation of C₆₀ and C₇₀. The high binding energies suggest that both DSCPP⊃C₆₀ and DSCPP⊃C₇₀ (∼92 and 118 kJ·mol^-1 at the M06-2X/6-31G(d,p) level of theory) are stable host-guest complexes, and the guest C₇₀ is more strongly encapsulated than C₆₀ in the gas phase. The thermodynamic information indicates that the formation of the two host-guest complexes is thermodynamically spontaneous. In addition, the frontier molecular orbital (FMO) features and intermolecular weak interaction region between DSCPP and fullerenes gusts are discussed to further understand the structures and properties of the DSCPP⊃fullerene systems. Finally, the ring-opening mechanism of the DSCPP under reduction conditions is investigated.

Stimuli-Responsive Supramolecular Coaggregation and Disaggregation of Host-Guest Conjugates Having a Disulfide Linkage

Water-soluble cationic and anionic cyclophanes (1a and 2a, respectively) having a dabsyl group with a cleavable disulfide linkage were synthesized as a host-guest conjugate covalently bound with both host and guest components. Self-inclusion phenomena but not self-aggregation behaviors were observed for each cyclophane in aqueous media. Each cyclophane includes its own dabsyl moiety (guest component) in its macrocyclic cavity (host component) through hydrophobic interaction. When 1 equiv. of cationic 1a was added to an aqueous solution of anionic 2a, however, supramolecular coaggregates formed spontaneously through host-guest complexation. As regard the supramolecular coaggregates, the existence of larger particles was confirmed by DLS measurements and TEM observation. The hydrophobic interaction between the dabsyl moiety and macrocyclic cavity and electrostatic interactions between 1a and 2a play important roles in the supramolecular coaggregate formation. Each cyclophane having a cleavable disulfide linkage was easily transformed to the corresponding thiols by reducing reagents such as DTT, which was confirmed by MALDI-TOF MS. Disaggregation of the supramolecular coaggregates composed of 1a and 2a was successfully performed upon addition of DTT, with release of the thiol derivative of dabsyl. Such disaggregation of the coaggregates was also conducted by other external stimuli such as salts and competitive guests.

A multiple-responsive water-soluble [3]pseudorotaxane constructed by pillar[5]arene-based molecular recognition and disulfide bond connection

A multiple-responsive water-soluble [3]pseudorotaxane was constructed by water-soluble pillar[5]arene-based molecular recognition and disulfide bond connection.

Biotinylated Cyclophane: Synthesis, Cyclophane-Avidin Conjugates, and Their Enhanced Guest-Binding Affinity

Cationic and anionic cyclophanes bearing a biotin moiety were synthesized as a water-soluble host (1a and 1b, respectively). Both hosts 1a and 1b were found to strongly bind avidin with binding constants of 1.3 × 10(8) M(-1), as confirmed by surface plasmon resonance measurements. The present conjugate of 1a with avidin (1a-avidin) showed an enhanced guest binding affinity toward fluorescence guests such as TNS and 2,6-ANS. The K values of 1a-avidin conjugate with TNS and 2,6-ANS were ~19-fold larger than those of monocyclic cyclophane 1a with the identical guests. Favorable hydrophobic and electrostatic interactions between 1a-avidin and TNS were suggested by computer-aided molecular modeling calculations. Moreover, addition of excess biotin to the complexes of 1a-avidin with the guests resulted in dissociation of 1a-avidin to avidin and 1a having less guest-binding affinity. Conversely, such enhancements in the guest-binding affinity were not obviously observed for the conjugate of anionic 1b with avidin (1b-avidin) due to electrostatic repulsion between anionic 1b and anionic guests.

Synthesis of dabsyl-appended cyclophanes and their heterodimer formation with pyrene-appended cyclophanes

As a quencher-type host, dabsyl-appended cyclophanes bearing positively and negatively charged side chains (1a and 1b, respectively) were synthesized. Formation of cyclophane heterodimers of 1a with anionic fluorescent cyclophane bearing a pyrene moiety 2b was confirmed by fluorescence titration experiments. The 1:1 binding constant (K) of 1a toward 2b was calculated to be 1.6 × 10(5) M(-1). On the other hand, almost no complexation affinity of 1a toward cationic analogue of fluorescent cyclophane 2a was confirmed by the identical methods, indicating that electrostatic interactions became effective in the formation of cyclophane heterodimers. In addition, van't Hoff analysis applied to the temperature-dependent K values for the heterodimer formation gave negative enthalpy (ΔH) and entropy changes (ΔS). The large and negative ΔH values as well as small and also negative ΔS values showed that the complexation is an exothermic and enthalpy-controlled but not entropy-driven process. A similar trend of molecular recognition was also confirmed for formation of cyclophane heterodimers of 1b with 2a by the identical methods.