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Nandi M, Bej S, Jana T, Ghosh P. From construction to application of a new generation of interlocked molecules composed of heteroditopic wheels. Chem Commun (Camb) 2023. [PMID: 38015500 DOI: 10.1039/d3cc03778a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
Abstract
Over the last few decades, research on mechanically interlocked molecules has significantly evolved owing to their unique structural features and interesting properties. A substantial percentage of the reported works have focused on the synthetic strategies, leading to the preparation of functional MIMs for their applications in the chemical, materials, and biomedical sciences. Importantly, various macrocyclic wheels with specific heteroditopicity (including phenanthroline, amide, amine, oxy-ether, isophthalamide, calixarene and triazole) and threading axles (bipyridine, phenanthroline, pyridinium, triazolium, etc.) have been designed to synthesize targeted multifunctional mononuclear/multinuclear pseudorotaxanes, rotaxanes and catenanes. The structural uniqueness of these interlocked systems is advantageous owing to the presence of mechanical bonds with specific three-dimensional cavities. Furthermore, their multi-functionalities and preorganised structural entities exhibit a high potential for versatile applications, like switching, shuttling, dynamic properties, recognition and sensing. In this feature article, we describe some of the most recent advances in the construction and chemical behaviour of a new generation of interlocked molecules, primarily focusing on heteroditopic wheels and their applications in different directions of the modern research area. Furthermore, we outline the future prospects and significant perspectives of the new generation heteroditopic wheel based interlocked molecules in different emerging areas of science.
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Affiliation(s)
- Mandira Nandi
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.
| | - Somnath Bej
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.
| | - Tarun Jana
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.
| | - Pradyut Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.
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Munasinghe VK, Pancholi J, Manawadu D, Zhang Z, Beer PD. Mechanical Bond Enhanced Lithium Halide Ion-Pair Binding by Halogen Bonding Heteroditopic Rotaxanes. Chemistry 2022; 28:e202201209. [PMID: 35621330 PMCID: PMC9541756 DOI: 10.1002/chem.202201209] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Indexed: 11/10/2022]
Abstract
A family of novel halogen bonding (XB) and hydrogen bonding (HB) heteroditopic [2]rotaxane host systems constructed by active metal template (AMT) methodology, were studied for their ability to cooperatively recognise lithium halide (LiX) ion-pairs. 1 H NMR ion-pair titration experiments in CD3 CN:CDCl3 solvent mixtures revealed a notable "switch-on" of halide anion binding in the presence of a co-bound lithium cation, with rotaxane hosts demonstrating selectivity for LiBr over LiI. The strength of halide binding was shown to greatly increase with increasing number of halogen bond donors integrated into the interlocked cavity, where an all-XB rotaxane was found to be the most potent host for LiBr. DFT calculations corroborated these findings, determining the mode of LiX ion-pair binding. Notably, ion-pair binding was not observed with the corresponding XB/HB macrocycles alone, highlighting the cooperative, heteroditopic, rotaxane axle-macrocycle component mechanical bond effect as an efficient strategy for ion-pair recognition in general.
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Affiliation(s)
- Vihanga K. Munasinghe
- Department of ChemistryUniversity of OxfordChemistry Research LaboratoryMansfield RoadOxfordOX13TAUK
| | - Jessica Pancholi
- Department of ChemistryUniversity of OxfordChemistry Research LaboratoryMansfield RoadOxfordOX13TAUK
| | - Dilhan Manawadu
- Department of ChemistryUniversity of Oxford Physical and Theoretical Chemistry LaboratoryOxfordOX13QZUK
| | - Zongyao Zhang
- Department of ChemistryUniversity of OxfordChemistry Research LaboratoryMansfield RoadOxfordOX13TAUK
| | - Paul D. Beer
- Department of ChemistryUniversity of OxfordChemistry Research LaboratoryMansfield RoadOxfordOX13TAUK
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3
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Bej S, Nandi M, Ghosh P. A Cd(ii) and Zn(ii) selective naphthyl based [2]rotaxane acts as an exclusive Zn(ii) sensor upon further functionalization with pyrene. Dalton Trans 2021; 50:294-303. [PMID: 33300925 DOI: 10.1039/d0dt03645e] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new multi-functional [2]rotaxane, ROTX, has been synthesized via a Cu(i) catalysed azide-alkyne cycloaddition reaction between Ni(ii) templated azide terminated pseudorotaxane composed of a naphthalene based heteroditopic wheel, NaphMC, and an alkyne terminated stopper. Subsequently, ROTX has been functionalized with pyrene moieties to develop a bifluorophoric [2]rotaxane, PYROTX, having naphthalene and pyrene moieties. Detailed characterization of these two rotaxanes is performed by utilizing several techniques such as ESI-MS, (1D and 2D) NMR, UV/Vis and PL studies. Comparative metal ion sensing studies of NaphMC (a fluorophoric cyclic receptor), ROTX ([2]rotaxane with a naphthyl fluorophore) and PYROTX ([2]rotaxane having naphthyl and pyrene fluorophores) have been performed to determine the effect of dimensionality/functionalization on the metal ion selectivity. Although NaphMC fails to discriminate between metal ions, ROTX serves as a selective sensor for Zn(ii) and Cd(ii). Importantly, PYROTX shows exclusive selectivity towards Zn(ii) over various transition, alkali and alkaline earth metal ions including Cd(ii).
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Affiliation(s)
- Somnath Bej
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, India.
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Nandi M, Bej S, Bhunia S, Ghosh P. Template Directed Syntheses of Electrochemically Active [2]Rotaxanes: Anion Binding and Redox Studies. ChemElectroChem 2020. [DOI: 10.1002/celc.201901655] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Mandira Nandi
- School of Chemical SciencesIndian Association for the Cultivation of Science 2 A & 2B Raja S. C. Mullick Road Kolkata 700032 India
| | - Somnath Bej
- School of Chemical SciencesIndian Association for the Cultivation of Science 2 A & 2B Raja S. C. Mullick Road Kolkata 700032 India
| | - Sarmistha Bhunia
- School of Chemical SciencesIndian Association for the Cultivation of Science 2 A & 2B Raja S. C. Mullick Road Kolkata 700032 India
| | - Pradyut Ghosh
- School of Chemical SciencesIndian Association for the Cultivation of Science 2 A & 2B Raja S. C. Mullick Road Kolkata 700032 India
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Santra S, Ghosh P. Fluorophoric [2]rotaxanes: post-synthetic functionalization, conformational fluxionality and metal ion chelation. NEW J CHEM 2020. [DOI: 10.1039/d0nj00353k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Fluorophoric [2]rotaxanes form an exciplex upon interpenetration and the exciplex signals are used to monitor the chelation properties of the interlocked systems.
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Affiliation(s)
- Saikat Santra
- School of Chemical Science
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
- Department of Chemistry
| | - Pradyut Ghosh
- School of Chemical Science
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
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Santra S, Bej S, Nandi M, Mondal P, Ghosh P. Syntheses of metallo-pseudorotaxanes, rotaxane and post-synthetically functionalized rotaxane: a comprehensive spectroscopic study and dynamic properties. Dalton Trans 2017; 46:13300-13313. [PMID: 28771266 DOI: 10.1039/c7dt01364g] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Herein, a bis-amido tris-amine macrocycle and five bipyridine-based bidentate chelating ligands were investigated towards various divalent transition metal ion (NiII, CoII, CuII, and ZnII)-templated syntheses of metallo [2]pseudorotaxanes. The formation of these ternary complexes was elucidated via different spectroscopic techniques such as ESI-MS, absorption spectroscopy, EPR spectroscopy, and single-crystal X-ray diffraction studies wherever possible. Azide-terminated NiII, CoII, CuII, ZnII-templated [2]pseudorotaxanes were explored to generate [2]rotaxane, ROT, via reaction with an alkyne-terminated triphenylene unit as a stopper under the mild reaction condition of the CuI-catalyzed azide-alkyne cycloaddition reaction. NiII-templated [2]pseudorotaxane was found to be the best precursor towards the high-yield synthesis of ROT. The interpenetrative nature of the center piece in metal-free rotaxane was also established through various spectroscopic techniques such as ESI-MS and 1D and 2D (COSY, NOESY, ROESY, and DOSY) NMR spectroscopy. Furthermore, ROT was functionalized via tri-acetylation as AcROT to incorporate three tertiary amides at the tris-amine centers; this AcROT exhibited rotamer-induced molecular motions in an interpenetrated system via the formation of multiple conformers/co-conformers. Additionally, the existence of multiple rotamers was established via variable-temperature NMR spectroscopic studies. Li+ and 12-crown-4 were found to be suitable for the reversible conformation/co-conformation fixation of tri-acetylated bis-amido tris-amine macrocyclic wheel-based rotaxane.
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Affiliation(s)
- Saikat Santra
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700 032, India.
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Santra S, Ghosh P. Rotamer-Induced Dynamic Nature of a [2]Rotaxane and Control of the Dynamics by External Stimuli. European J Org Chem 2017. [DOI: 10.1002/ejoc.201601525] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Saikat Santra
- Department of Inorganic Chemistry; Indian Association for the Cultivation of Science; 2A and 2B Raja S.C. Mullick Road Kolkata India
| | - Pradyut Ghosh
- Department of Inorganic Chemistry; Indian Association for the Cultivation of Science; 2A and 2B Raja S.C. Mullick Road Kolkata India
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Kristensen R, Andersen SS, Olsen G, Jeppesen JO. Probing the Role of Glycol Chain Lengths in π-Donor–Acceptor [2]Pseudorotaxanes Based on Monopyrrolo-Tetrathiafulvalene and Cyclobis(paraquat-p-phenylene). J Org Chem 2017; 82:1371-1379. [DOI: 10.1021/acs.joc.6b02466] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Rikke Kristensen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Sissel S. Andersen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Gunnar Olsen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Jan O. Jeppesen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
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Nandi M, Santra S, Akhuli B, Ghosh P. Threading of various ‘U’ shaped bidentate axles into a heteroditopic macrocyclic wheel via NiII/CuII templation. Dalton Trans 2017; 46:7421-7433. [DOI: 10.1039/c7dt00699c] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The NiII/CuII templated threading of various terminal group embedded ‘U’ shaped axles into an amido–amine macrocyclic wheel towards the development of a new generation of [2]pseudorotaxanes via [3 + 2] coordination assisted by other non-covalent interactions.
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Affiliation(s)
- Mandira Nandi
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - Saikat Santra
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - Bidyut Akhuli
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - Pradyut Ghosh
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
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Brown A, Mennie KM, Mason O, White NG, Beer PD. Copper(ii)-directed synthesis of neutral heteroditopic [2]rotaxane ion-pair host systems incorporating hydrogen and halogen bonding anion binding cavities. Dalton Trans 2017; 46:13376-13385. [DOI: 10.1039/c7dt02832f] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Neutral heteroditopic [2]rotaxane ion-pair host systems were synthesised via a copper(ii)-directed metal template strategy and shown to undergo cooperative anion recognition with a co-bound zinc(ii) cation.
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Affiliation(s)
- Asha Brown
- Chemistry Research Laboratory
- Department of Chemistry
- University of Oxford
- Oxford
- UK
| | - Katrina M. Mennie
- Chemistry Research Laboratory
- Department of Chemistry
- University of Oxford
- Oxford
- UK
| | - Owen Mason
- Chemistry Research Laboratory
- Department of Chemistry
- University of Oxford
- Oxford
- UK
| | - Nicholas G. White
- Research School of Chemistry
- The Australian National University
- Canberra
- Australia
| | - Paul D. Beer
- Chemistry Research Laboratory
- Department of Chemistry
- University of Oxford
- Oxford
- UK
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Tron A, Pianet I, Martinez-Cuezva A, Tucker JHR, Pisciottani L, Alajarin M, Berna J, McClenaghan ND. Remote Photoregulated Ring Gliding in a [2]Rotaxane via a Molecular Effector. Org Lett 2016; 19:154-157. [DOI: 10.1021/acs.orglett.6b03457] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Arnaud Tron
- Institut
des Sciences Moléculaires, CNRS UMR 5255, Université de Bordeaux, 33405 Talence, France
| | - Isabelle Pianet
- Institut
des Sciences Moléculaires, CNRS UMR 5255, Université de Bordeaux, 33405 Talence, France
| | - Alberto Martinez-Cuezva
- Departamento
de Química Orgánica, Facultad de Química, Universidad de Murcia, E-30100 Murcia, Spain
| | - James H. R. Tucker
- School
of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Luca Pisciottani
- Institut
des Sciences Moléculaires, CNRS UMR 5255, Université de Bordeaux, 33405 Talence, France
| | - Mateo Alajarin
- Departamento
de Química Orgánica, Facultad de Química, Universidad de Murcia, E-30100 Murcia, Spain
| | - Jose Berna
- Departamento
de Química Orgánica, Facultad de Química, Universidad de Murcia, E-30100 Murcia, Spain
| | - Nathan D. McClenaghan
- Institut
des Sciences Moléculaires, CNRS UMR 5255, Université de Bordeaux, 33405 Talence, France
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Hayashi R, Mutoh Y, Kasama T, Saito S. Synthesis of [3]Rotaxanes by the Combination of Copper-Mediated Coupling Reaction and Metal-Template Approach. J Org Chem 2015; 80:7536-46. [PMID: 26161508 DOI: 10.1021/acs.joc.5b01120] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
[3]Rotaxanes with two axle components and one ring component were synthesized by the combination of a coupling reaction using a transition-metal catalyst and a metal-template approach. Thus, [2]rotaxanes were prepared by the oxidative dimerization of alkyne promoted by macrocyclic phenanthroline-CuI complexes. The [2]rotaxane was reacted with a Cu(I) salt and an acyclic ligand to generate a tetrahedral Cu(I) complex. Metal-free [3]rotaxane was isolated by the end-capping reaction of the acyclic ligand, followed by the removal of Cu(I) ion. The stability of the tetrahedral Cu(I) complexes depended on the size of both the ring component and the acyclic ligand, which was correlated with the yield of the corresponding [3]rotaxane.
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Affiliation(s)
- Ryuto Hayashi
- †Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
| | - Yuichiro Mutoh
- †Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
| | - Takeshi Kasama
- ‡Research Center for Medical and Dental Sciences, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan
| | - Shinichi Saito
- †Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
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Saha S, Santra S, Ghosh P. [2]Pseudorotaxane composed of heteroditopic macrobicycle and pyridine N-oxide based axle: recognition site dependent axle orientation. Org Lett 2015; 17:1854-7. [PMID: 25825821 DOI: 10.1021/acs.orglett.5b00470] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A strategy for threading an axle having a hydrogen bond acceptor unit in the cavity of a C3v symmetric amido-amine macrobicycle is investigated. The macrobicycle acts as a wheel in its neutral as well as triprotonated states to form threaded architectures with a pyridine N-oxide derivative. The negative oxygen dipole of the axle is capable of [2]pseudorotaxane formation in two different orientations with the wheel in its neutral and triprotonated states.
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Santra S, Mukherjee S, Bej S, Saha S, Ghosh P. Amino-ether macrocycle that forms CuII templated threaded heteroleptic complexes: a detailed selectivity, structural and theoretical investigations. Dalton Trans 2015; 44:15198-211. [DOI: 10.1039/c5dt00596e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Self-sorting behavior of a newly synthesized macrocycle with divalent metal ions and aromatic ligands via pseudorotaxane formation has been described.
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Affiliation(s)
- Saikat Santra
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - Sandip Mukherjee
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - Somnath Bej
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - Subrata Saha
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - Pradyut Ghosh
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
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