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Peng Y, Yu W, Feng X, Xu T, Früchtl H, van Mourik T, Kirk SR, Jenkins S. The Cis-Effect Explained Using Next-Generation QTAIM. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27186099. [PMID: 36144830 PMCID: PMC9506152 DOI: 10.3390/molecules27186099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Revised: 09/05/2022] [Accepted: 09/14/2022] [Indexed: 11/22/2022]
Abstract
We used next-generation QTAIM (NG-QTAIM) to explain the cis-effect for two families of molecules: C2X2 (X = H, F, Cl) and N2X2 (X = H, F, Cl). We explained why the cis-effect is the exception rather than the rule. This was undertaken by tracking the motion of the bond critical point (BCP) of the stress tensor trajectories Tσ(s) used to sample the Uσ-space cis- and trans-characteristics. The Tσ(s) were constructed by subjecting the C1-C2 BCP and N1-N2 BCP to torsions ± θ and summing all possible Tσ(s) from the bonding environment. During this process, care was taken to fully account for multi-reference effects. We associated bond-bending and bond-twisting components of the Tσ(s) with cis- and trans-characteristics, respectively, based on the relative ease of motion of the electronic charge density ρ(rb). Qualitative agreement is found with existing experimental data and predictions are made where experimental data is not available.
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Affiliation(s)
- Yuting Peng
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, China
| | - Wenjing Yu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, China
| | - Xinxin Feng
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, China
| | - Herbert Früchtl
- EaStCHEM School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, Scotland, UK
| | - Tanja van Mourik
- EaStCHEM School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, Scotland, UK
| | - Steven R. Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, China
- Correspondence: (S.R.K.); (S.J.)
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, China
- Correspondence: (S.R.K.); (S.J.)
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Datta S, Limpanuparb T. Steric effects vs. electron delocalization: a new look into the stability of diastereomers, conformers and constitutional isomers. RSC Adv 2021; 11:20691-20700. [PMID: 35479364 PMCID: PMC9033979 DOI: 10.1039/d1ra02877d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Accepted: 05/24/2021] [Indexed: 01/22/2023] Open
Abstract
A quantum chemical investigation of the stability of compounds with identical formulas was carried out on 23 classes of compounds made of C, N, P, O and S atoms as core structures and halogens H, F, Cl, Br and I as substituents. All possible structures were generated and investigated by quantum mechanical methods. The prevalence of a formula in which its Z configuration, gauche conformation or meta isomer is the most stable form is calculated and discussed. Quantitative and qualitative models to explain the stability of the 23 classes of halogenated compounds were also proposed.
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Affiliation(s)
- Sopanant Datta
- Science Division, Mahidol University International College, Mahidol University Salaya Nakhon Pathom 73170 Thailand
| | - Taweetham Limpanuparb
- Science Division, Mahidol University International College, Mahidol University Salaya Nakhon Pathom 73170 Thailand
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Uchimaru T, Mizukado J. Computational studies of fluorinated propenes: The fluorine "cis effect," barrier heights of the internal rotation of CX3 (X = H or F) group, and π-bond strengths. J Fluor Chem 2021. [DOI: 10.1016/j.jfluchem.2021.109772] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Khayer K, Haque T. Density Functional Theory Calculation on the Structural, Electronic, and Optical Properties of Fluorene-Based Azo Compounds. ACS OMEGA 2020; 5:4507-4531. [PMID: 32175498 PMCID: PMC7066559 DOI: 10.1021/acsomega.9b03839] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 02/19/2020] [Indexed: 06/02/2023]
Abstract
In the present work, a theoretical study was carried out to study the molecular structure, harmonic vibrational frequencies, normal force field calculations, and Raman scattering activities for fluorene π-conjugation spacer containing azo-based dye named trans- and cis-bis(9H-fluoren-2-yl)diazene (AzoFL) at density functional theory using B3LYP (Becke-3-Lee-Yang-Parr) functional and 6-31+G(d,p) basis set. The theoretical calculations have also been performed with fluorene and the trans- and cis-isomers of diazene, difluorodiazene by the same method DFT-B3LYP/6-31+G(d,p) and basis set. The present DFT calculation shows that the trans-AzoFL is more stable than the cis-AzoFL by 16.33 kcal/mol. We also report the results of new assignments of vibrational frequencies obtained on the basis of the present calculations. Time-dependent DFT (TD-DFT) and ZIndo calculations have been performed to study the UV-vis absorption behavior and frontier molecular orbitals for the above-mentioned compounds. The UV-vis spectrum from TD-DFT calculation shows the π-π* transition bands at λmax 423.53 nm (εmax 6.0 × 104 M-1 cm-1) and at λmax 359.45 nm (εmax 1.7 × 104 M-1 cm-1), respectively, for trans- and cis-AzoFL. Compared to parent trans-diazene (λmax 178.97 nm), a significant variation to longer wavelength (∼245 nm) is observed due to the incorporation of the fluorene (FL) ring into the -N=N- backbone. The co-planarity of the two FL rings with the longer N=N bond length compared to the unsubstituted parent diazene indicates the effective red shift due to the extended π-conjugation in trans-AzoFL. The nonplanarity of cis-AzoFL (48.1° tilted about the C-N bond relative to the planar N=N-C bond) reflects its ∼64 nm blue shift compared to that of trans-counterpart.
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Affiliation(s)
- Khurshida Khayer
- Department of Chemistry, Jahangirnagar
University, Savar, Dhaka 1342, Bangladesh
| | - Tahmina Haque
- Department of Chemistry, Jahangirnagar
University, Savar, Dhaka 1342, Bangladesh
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Juaristi E, Notario R. Theoretical Evidence for the Relevance of n(F) → σ*(C–X) (X = H, C, O, S) Stereoelectronic Interactions. J Org Chem 2016; 81:1192-7. [DOI: 10.1021/acs.joc.5b02718] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Eusebio Juaristi
- Departamento
de Química, Centro de Investigación y de Estudios Avanzados, Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, D. F. Mexico
| | - Rafael Notario
- Instituto
de Química Física Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain
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Banerjee D, Ghosh A, Chattopadhyay S, Ghosh P, Chaudhuri RK. Revisiting the ‘cis-effect’ in 1,2-difluoro derivatives of ethylene and diazene usingab initiomultireference methods. Mol Phys 2014. [DOI: 10.1080/00268976.2014.938710] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Jenkins S, Kirk SR, Rong C, Yin D. The cis-effect using the topology of the electronic charge density. Mol Phys 2012. [DOI: 10.1080/00268976.2012.745631] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Samantha Jenkins
- a Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China) and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province , College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha Hunan 410081 , China
| | - Steven R. Kirk
- a Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China) and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province , College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha Hunan 410081 , China
| | - Chunying Rong
- a Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China) and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province , College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha Hunan 410081 , China
| | - Dulin Yin
- a Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China) and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province , College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha Hunan 410081 , China
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Beckers H, Zeng X, Willner H. Intermediates Involved in the Oxidation of Nitrogen Monoxide: Photochemistry of thecis-N2O2⋅O2complex and ofsym-N2O4in Solid Ne Matrices. Chemistry 2010; 16:1506-20. [DOI: 10.1002/chem.200902406] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Affiliation(s)
- Satoshi Inagaki
- Dapartment of Chemistry, Faculty of Engineering, Gifu University, Yanagido, Gifu, 501-1193, Japan,
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Zeng X, Beckers H, Willner H. Difluoro‐λ5‐Phosphinonitrile F2P&tbond;N: Matrix Isolation and Photoisomerization into FP&dbond;NF. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200901380] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Zeng X, Beckers H, Willner H. Difluoro-λ5-Phosphinonitrile F2PN: Matrix Isolation and Photoisomerization into FPNF. Angew Chem Int Ed Engl 2009; 48:4828-31. [DOI: 10.1002/anie.200901380] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Bond D. Computational Methods in Organic Thermochemistry. 4. Enthalpies and Gibbs Energies of Formation of the cis- and trans-Diazenes. J Phys Chem A 2009; 113:719-25. [DOI: 10.1021/jp807308u] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Douglas Bond
- The Ausserberg Services, 7829 Center Blvd S.E., Snoqualmie, Washington 98065
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Zeng X, Beckers H, Willner H. Photoisomerization of matrix isolated F2CS into cis and trans FCSF. Chem Commun (Camb) 2009:5162-4. [DOI: 10.1039/b911638a] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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