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Ryckaert B, Demeyere E, Degroote F, Janssens H, Winne JM. 1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures. Beilstein J Org Chem 2023; 19:115-132. [PMID: 36761474 PMCID: PMC9907017 DOI: 10.3762/bjoc.19.12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 01/20/2023] [Indexed: 02/05/2023] Open
Abstract
This review covers the synthetic applications of 1,4-dithianes, as well as derivatives thereof at various oxidation states. The selected examples show how the specific heterocyclic reactivity can be harnessed for the controlled synthesis of carbon-carbon bonds. The reactivity is compared to and put into context with more common synthetic building blocks, such as 1,3-dithianes and (hetero)aromatic building blocks. 1,4-Dithianes have as yet not been investigated to the same extent as their well-known 1,3-dithiane counterparts, but they do offer attractive transformations that can find good use in the assembly of a wide array of complex molecular architectures, ranging from lipids and carbohydrates to various carbocyclic scaffolds. This versatility arises from the possibility to chemoselectively cleave or reduce the sulfur-heterocycle to reveal a versatile C2-synthon.
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Affiliation(s)
- Bram Ryckaert
- Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 (S4), 9000 Gent, Belgium
| | - Ellen Demeyere
- Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 (S4), 9000 Gent, Belgium
| | - Frederick Degroote
- Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 (S4), 9000 Gent, Belgium
| | - Hilde Janssens
- Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 (S4), 9000 Gent, Belgium
| | - Johan M Winne
- Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 (S4), 9000 Gent, Belgium
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2
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Shipton ML, Riley AM, Rossi AM, Brearley CA, Taylor CW, Potter BVL. Both d- and l-Glucose Polyphosphates Mimic d- myo-Inositol 1,4,5-Trisphosphate: New Synthetic Agonists and Partial Agonists at the Ins(1,4,5)P 3 Receptor. J Med Chem 2020; 63:5442-5457. [PMID: 32286062 PMCID: PMC7260056 DOI: 10.1021/acs.jmedchem.0c00215] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
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Chiral sugar derivatives are potential
cyclitol surrogates of the
Ca2+-mobilizing intracellular messenger d-myo-inositol 1,4,5-trisphosphate [Ins(1,4,5)P3]. Six novel polyphosphorylated analogues derived from both d- and l-glucose were synthesized. Binding to Ins(1,4,5)P3 receptors [Ins(1,4,5)P3R] and the ability to release
Ca2+ from intracellular stores via type 1 Ins(1,4,5)P3Rs were investigated. β-d-Glucopyranosyl 1,3,4-tris-phosphate,
with similar phosphate regiochemistry and stereochemistry to Ins(1,4,5)P3, and α-d-glucopyranosyl 1,3,4-tris-phosphate
are full agonists, being equipotent and 23-fold less potent than Ins(1,4,5)P3, respectively, in Ca2+-release assays and similar
to Ins(1,4,5)P3 and 15-fold weaker in binding assays. They
can be viewed as truncated analogues of adenophostin A and refine
understanding of structure-activity relationships for this Ins(1,4,5)P3R agonist. l-Glucose-derived ligands, methyl α-l-glucopyranoside 2,3,6-trisphosphate and methyl α-l-glucopyranoside 2,4,6-trisphosphate, are also active, while
their corresponding d-enantiomers, methyl α-d-glucopyranoside 2,3,6-trisphosphate and methyl α-d-glucopyranoside 2,4,6-trisphosphate, are inactive. Interestingly,
both l-glucose-derived ligands are partial agonists: they
are among the least efficacious agonists of Ins(1,4,5)P3R yet identified, providing new leads for antagonist development.
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Affiliation(s)
- Megan L Shipton
- Drug Discovery & Medicinal Chemistry, Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, U. K
| | - Andrew M Riley
- Drug Discovery & Medicinal Chemistry, Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, U. K
| | - Ana M Rossi
- Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, U. K
| | - Charles A Brearley
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U. K
| | - Colin W Taylor
- Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, U. K
| | - Barry V L Potter
- Drug Discovery & Medicinal Chemistry, Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, U. K
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D'Alonzo D, De Fenza M, Porto C, Iacono R, Huebecker M, Cobucci-Ponzano B, Priestman DA, Platt F, Parenti G, Moracci M, Palumbo G, Guaragna A. N-Butyl-l-deoxynojirimycin (l-NBDNJ): Synthesis of an Allosteric Enhancer of α-Glucosidase Activity for the Treatment of Pompe Disease. J Med Chem 2017; 60:9462-9469. [PMID: 29112434 DOI: 10.1021/acs.jmedchem.7b00646] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The highly stereocontrolled de novo synthesis of l-NBDNJ (the unnatural enantiomer of the iminosugar drug Miglustat) and a preliminary evaluation of its chaperoning potential are herein reported. l-NBDNJ is able to enhance lysosomal α-glucosidase levels in Pompe disease fibroblasts, either when administered singularly or when coincubated with the recombinant human α-glucosidase. In addition, differently from its d-enantiomer, l-NBDNJ does not act as a glycosidase inhibitor.
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Affiliation(s)
- Daniele D'Alonzo
- Department of Chemical Sciences, Università degli Studi di Napoli Federico II , via Cintia, 80126 Napoli, Italy
| | - Maria De Fenza
- Department of Chemical Sciences, Università degli Studi di Napoli Federico II , via Cintia, 80126 Napoli, Italy
| | - Caterina Porto
- Department of Translational Medical Sciences, Section of Pediatrics, Università degli Studi di Napoli Federico II , Via S. Pansini 5, 80131 Napoli, Italy
| | - Roberta Iacono
- Institute of Biosciences and Bioresources, Consiglio Nazionale delle Ricerche , Via P. Castellino 111, 80131 Napoli, Italy
| | - Mylene Huebecker
- Department of Pharmacology, University of Oxford , Mansfield Road, Oxford OX1 3QT, U.K
| | - Beatrice Cobucci-Ponzano
- Institute of Biosciences and Bioresources, Consiglio Nazionale delle Ricerche , Via P. Castellino 111, 80131 Napoli, Italy
| | - David A Priestman
- Department of Pharmacology, University of Oxford , Mansfield Road, Oxford OX1 3QT, U.K
| | - Frances Platt
- Department of Pharmacology, University of Oxford , Mansfield Road, Oxford OX1 3QT, U.K
| | - Giancarlo Parenti
- Department of Translational Medical Sciences, Section of Pediatrics, Università degli Studi di Napoli Federico II , Via S. Pansini 5, 80131 Napoli, Italy.,Telethon Institute of Genetics and Medicine , Via Campi Flegrei 34, 80078 Pozzuoli, Italy
| | - Marco Moracci
- Institute of Biosciences and Bioresources, Consiglio Nazionale delle Ricerche , Via P. Castellino 111, 80131 Napoli, Italy.,Department of Biology, Università degli Studi di Napoli Federico II , via Cintia, 80126 Napoli, Italy
| | - Giovanni Palumbo
- Department of Chemical Sciences, Università degli Studi di Napoli Federico II , via Cintia, 80126 Napoli, Italy
| | - Annalisa Guaragna
- Department of Chemical Sciences, Università degli Studi di Napoli Federico II , via Cintia, 80126 Napoli, Italy
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Song W, Wang S, Tang W. De Novo Synthesis of Mono- and Oligosaccharides via Dihydropyran Intermediates. Chem Asian J 2017; 12:1027-1042. [DOI: 10.1002/asia.201700212] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Wangze Song
- School of Pharmacy; University of Wisconsin-Madison; Madison WI 53705 USA
- School of Pharmaceutical Science and Technology; State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian, 116024 P.R. China
| | - Shuojin Wang
- School of Pharmacy; Hainan Medical University; Haikou 571199 P.R. China
| | - Weiping Tang
- School of Pharmacy; University of Wisconsin-Madison; Madison WI 53705 USA
- Department of Chemistry; University of Wisconsin-Madison; Madison WI 53706 USA
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Affiliation(s)
- Weijia Xie
- State Key Laboratory of Natural Medicines and Department of Medicinal Chemistry; China Pharmaceutical University; 24 Tong Jia Xiang Nanjing 210009 P. R. China
| | - Aijun Lin
- State Key Laboratory of Natural Medicines and Department of Medicinal Chemistry; China Pharmaceutical University; 24 Tong Jia Xiang Nanjing 210009 P. R. China
| | - Jinyi Xu
- State Key Laboratory of Natural Medicines and Department of Medicinal Chemistry; China Pharmaceutical University; 24 Tong Jia Xiang Nanjing 210009 P. R. China
| | - Xiaoming Wu
- State Key Laboratory of Natural Medicines and Department of Medicinal Chemistry; China Pharmaceutical University; 24 Tong Jia Xiang Nanjing 210009 P. R. China
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Mohamed S, Ferro V. Synthetic Approaches to L-Iduronic Acid and L-Idose: Key Building Blocks for the Preparation of Glycosaminoglycan Oligosaccharides. Adv Carbohydr Chem Biochem 2015; 72:21-61. [PMID: 26613814 DOI: 10.1016/bs.accb.2015.07.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
L-Iduronic acid (IdoA) is an important monosaccharide component of glycosaminoglycans (GAGs) such as heparin, heparan sulfate and dermatan sulfate. GAGs are complex, highly sulfated polysaccharides that mediate a multitude of physiological and pathological processes via their interactions with a range of diverse proteins. The main challenge in the synthesis of GAG oligosaccharides is the efficient gram-scale preparation of IdoA building blocks since neither IdoA nor L-idose is commercially available or readily accessible from natural sources. In this review, the different synthetic approaches for the preparation of IdoA and its derivatives, including L-idose, are presented and discussed. Derivatives of the latter are often used in GAG synthesis and are elaborated to IdoA via selective oxidation at C-6 after incorporation into a GAG chain. Particular focus will be given to the preparation of IdoA synthons most commonly used for GAG oligosaccharide synthesis, and on the progress made since the last systematic review in this area.
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Affiliation(s)
- Shifaza Mohamed
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia
| | - Vito Ferro
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia
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Terami Y, Uechi K, Nomura S, Okamoto N, Morimoto K, Takata G. Production of l-allose and d-talose from l-psicose and d-tagatose by l-ribose isomerase. Biosci Biotechnol Biochem 2015; 79:1725-9. [DOI: 10.1080/09168451.2015.1038215] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Abstract
l-ribose isomerase (L-RI) from Cellulomonas parahominis MB426 can convert l-psicose and d-tagatose to l-allose and d-talose, respectively. Partially purified recombinant L-RI from Escherichia coli JM109 was immobilized on DIAION HPA25L resin and then utilized to produce l-allose and d-talose. Conversion reaction was performed with the reaction mixture containing 10% l-psicose or d-tagatose and immobilized L-RI at 40 °C. At equilibrium state, the yield of l-allose and d-talose was 35.0% and 13.0%, respectively. Immobilized enzyme could convert l-psicose to l-allose without remarkable decrease in the enzyme activity over 7 times use and d-tagatose to d-talose over 37 times use. After separation and concentration, the mixture solution of l-allose and d-talose was concentrated up to 70% and crystallized by keeping at 4 °C. l-Allose and d-talose crystals were collected from the syrup by filtration. The final yield was 23.0% l-allose and 7.30% d-talose that were obtained from l-psicose and d-tagatose, respectively.
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Affiliation(s)
- Yuji Terami
- The United Graduate School of Agricultural Sciences, Ehime University, Matsuyama, Japan
| | - Keiko Uechi
- Rare Sugar Research Center, Kagawa University, Kita-gun, Japan
| | - Saki Nomura
- Faculty of Agriculture, Kagawa University, Kita-gun, Japan
| | - Naoki Okamoto
- Faculty of Agriculture, Kagawa University, Kita-gun, Japan
| | - Kenji Morimoto
- Rare Sugar Research Center, Kagawa University, Kita-gun, Japan
| | - Goro Takata
- Rare Sugar Research Center, Kagawa University, Kita-gun, Japan
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Affiliation(s)
| | - Mikael Bols
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark
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Guaragna A, Dell’Isola A, D’Errico S, Palumbo G, D’Alonzo D. Beyond Achmatowicz reaction: DDQ-mediated chemo- and stereoconvergent domino-one pot cyclization/rearrangement of bis-thioenol ether-containing chiral building blocks. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.10.113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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10
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Rentner J, Kljajic M, Offner L, Breinbauer R. Recent advances and applications of reductive desulfurization in organic synthesis. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.06.104] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Paolella C, D'Alonzo D, Palumbo G, Guaragna A. Sulfur-assisted domino access to bicyclic dihydrofurans: case study and early synthetic applications. Org Biomol Chem 2013; 11:7825-9. [DOI: 10.1039/c3ob41324a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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12
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Monrad RN, Madsen R. Modern methods for shortening and extending the carbon chain in carbohydrates at the anomeric center. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.08.047] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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D’Alonzo D, Guaragna A, Van Aerschot A, Herdewijn P, Palumbo G. Toward l-Homo-DNA: Stereoselective de Novo Synthesis of β-l-erythro-Hexopyranosyl Nucleosides. J Org Chem 2010; 75:6402-10. [DOI: 10.1021/jo100691y] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniele D’Alonzo
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II, via Cinthia 4, I-80126 Napoli, Italy
| | - Annalisa Guaragna
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II, via Cinthia 4, I-80126 Napoli, Italy
| | - Arthur Van Aerschot
- Katholieke Universiteit Leuven, Rega Institute for Medical Research, Minderbroederstraat 10, B-3000 Leuven, Belgium
| | - Piet Herdewijn
- Katholieke Universiteit Leuven, Rega Institute for Medical Research, Minderbroederstraat 10, B-3000 Leuven, Belgium
| | - Giovanni Palumbo
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II, via Cinthia 4, I-80126 Napoli, Italy
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Guaragna A, D’Alonzo D, Paolella C, Napolitano C, Palumbo G. Highly Stereoselective de Novo Synthesis of l-Hexoses. J Org Chem 2010; 75:3558-68. [DOI: 10.1021/jo100077k] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Annalisa Guaragna
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
| | - Daniele D’Alonzo
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
| | - Concetta Paolella
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
| | - Carmela Napolitano
- School of Chemistry, National University of Ireland, University Road, Galway, Ireland
| | - Giovanni Palumbo
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
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D'Alonzo D, Van Aerschot A, Guaragna A, Palumbo G, Schepers G, Capone S, Rozenski J, Herdewijn P. Synthesis and base pairing properties of 1',5'-anhydro-L-hexitol nucleic acids (L-HNA). Chemistry 2010; 15:10121-31. [PMID: 19739223 DOI: 10.1002/chem.200901847] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Oligonucleotides composed of 1',5'-anhydro-arabino-hexitol nucleosides belonging to the L series (L-HNA) were prepared and preliminarily studied as a novel potential base-pairing system. Synthesis of enantiopure L-hexitol nucleotide monomers equipped with a 2'-(N(6)-benzoyladenin-9-yl) or a 2'-(thymin-1-yl) moiety was carried out by a de novo approach based on a domino reaction as key step. The L oligonucleotide analogues were evaluated in duplex formation with natural complements as well as with unnatural sugar-modified oligonucleotides. In many cases stable homo- and heterochiral associations were found. Besides T(m) measurements, detection of heterochiral complexes was unambiguously confirmed by LC-MS studies. Interestingly, circular dichroism measurements of the most stable duplexes suggested that L-HNA form left-handed helices with both D and L oligonucleotides.
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Affiliation(s)
- Daniele D'Alonzo
- Dipartimento di Chimica Organica e Biochimica, Università Federico II, Napoli, via Cinthia 4, 80126 Napoli, Italy
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Guaragna A, D’Alonzo D, Paolella C, Palumbo G. Synthesis of 1-deoxy-l-gulonojirimycin and 1-deoxy-l-talonojirimycin. Tetrahedron Lett 2009. [DOI: 10.1016/j.tetlet.2009.02.111] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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D’Alonzo D, Guaragna A, Van Aerschot A, Herdewijn P, Palumbo G. De novo approach to l-anhydrohexitol nucleosides as building blocks for the synthesis of l-hexitol nucleic acids (l-HNA). Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2008.07.159] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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