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Liepuoniute I, Jellen MJ, Garcia-Garibay MA. Correlated motion and mechanical gearing in amphidynamic crystalline molecular machines. Chem Sci 2020; 11:12994-13007. [PMID: 34094484 PMCID: PMC8163207 DOI: 10.1039/d0sc04495d] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2020] [Accepted: 10/15/2020] [Indexed: 12/21/2022] Open
Abstract
In this review we highlight the recent efforts towards the development of molecular gears with an emphasis on building molecular gears in the solid state and the role that molecular gearing and correlated motions may play in the function of crystalline molecular machines. We discuss current molecular and crystal engineering strategies, challenges associated with engineering correlated motion in crystals, and outline experimental and theoretical tools to explore gearing dynamics while highlighting key advances made to date.
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Affiliation(s)
- Ieva Liepuoniute
- Department of Chemistry and Biochemistry, University of California Los Angeles CA 90095-1569 USA
| | - Marcus J Jellen
- Department of Chemistry and Biochemistry, University of California Los Angeles CA 90095-1569 USA
| | - Miguel A Garcia-Garibay
- Department of Chemistry and Biochemistry, University of California Los Angeles CA 90095-1569 USA
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2
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Leung FC, Ishiwari F, Shoji Y, Nishikawa T, Takeda R, Nagata Y, Suginome M, Uozumi Y, Yamada YMA, Fukushima T. Synthesis and Catalytic Applications of a Triptycene-Based Monophosphine Ligand for Palladium-Mediated Organic Transformations. ACS OMEGA 2017; 2:1930-1937. [PMID: 31457552 PMCID: PMC6640964 DOI: 10.1021/acsomega.7b00200] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Accepted: 04/28/2017] [Indexed: 06/10/2023]
Abstract
1-Methoxy-8-(diphenylphosphino)triptycene (1), featuring high structural rigidity and steric bulkiness around the phosphine functionality, was synthesized as a new chiral monophosphine ligand for transition metal-catalyzed reactions. In the presence of 5-10 mol ppm (i.e., 0.0005-0.001 mol %) Pd(OAc)2 and 1 (2 equiv for Pd), Suzuki-Miyaura cross-coupling reactions of aryl bromides and arylboronic acids proceeded effectively under mild atmospheric conditions to give the corresponding biaryl compounds in a high yield. The single-crystal X-ray analysis of a Pd(II) complex of 1 revealed its coordination structure, in which two homochiral molecules form a dimer, suggesting that triptycene could provide a chiral environment for asymmetric organic transformations. In fact, optically active 1 obtained by optical resolution showed good enantioselectivity in the palladium-catalyzed asymmetric hydrosilylation of styrene, which represents, for the first time, the asymmetric catalytic activity of triptycene-based monophosphine ligands.
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Affiliation(s)
- Franco
King-Chi Leung
- Laboratory
for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
- RIKEN
Center for Sustainable Resource Science, 2-1 Hirosawa, Wako 351-0198, Japan
| | - Fumitaka Ishiwari
- Laboratory
for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Yoshiaki Shoji
- Laboratory
for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Tsuyoshi Nishikawa
- Department
of Synthetic Chemistry and Biological Chemistry, Graduate School of
Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Ryohei Takeda
- Department
of Synthetic Chemistry and Biological Chemistry, Graduate School of
Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Yuuya Nagata
- Department
of Synthetic Chemistry and Biological Chemistry, Graduate School of
Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Michinori Suginome
- Department
of Synthetic Chemistry and Biological Chemistry, Graduate School of
Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Yasuhiro Uozumi
- RIKEN
Center for Sustainable Resource Science, 2-1 Hirosawa, Wako 351-0198, Japan
- Institute
for Molecular Science and The Graduate School for Advanced Studies, Myodaiji, Okazaki 444-8787, Japan
| | - Yoichi M. A. Yamada
- RIKEN
Center for Sustainable Resource Science, 2-1 Hirosawa, Wako 351-0198, Japan
| | - Takanori Fukushima
- Laboratory
for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
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3
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Flaherty DP, Miller JR, Garshott DM, Hedrick M, Gosalia P, Li Y, Milewski M, Sugarman E, Vasile S, Salaniwal S, Su Y, Smith LH, Chung TDY, Pinkerton AB, Aubé J, Callaghan MU, Golden JE, Fribley AM, Kaufman RJ. Discovery of Sulfonamidebenzamides as Selective Apoptotic CHOP Pathway Activators of the Unfolded Protein Response. ACS Med Chem Lett 2014; 5:1278-1283. [PMID: 25530830 PMCID: PMC4266338 DOI: 10.1021/ml5003234] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Accepted: 10/29/2014] [Indexed: 01/29/2023] Open
Abstract
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Cellular proteins that fail to fold
properly result in inactive
or disfunctional proteins that can have toxic functions. The unfolded
protein response (UPR) is a two-tiered cellular mechanism initiated
by eukaryotic cells that have accumulated misfolded proteins within
the endoplasmic reticulum (ER). An adaptive pathway facilitates the
clearance of the undesired proteins; however, if overwhelmed, cells
trigger apoptosis by upregulating transcription factors such as C/EBP-homologous
protein (CHOP). A high throughput screen was performed directed at
identifying compounds that selectively upregulate the apoptotic CHOP
pathway while avoiding adaptive signaling cascades, resulting in a
sulfonamidebenzamide chemotype that was optimized. These efforts produced
a potent and selective CHOP inducer (AC50 = 0.8 μM;
XBP1 > 80 μM), which was efficacious in both mouse embryonic
fibroblast cells and a human oral squamous cell cancer cell line,
and demonstrated antiproliferative effects for multiple cancer cell
lines in the NCI-60 panel.
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Affiliation(s)
- Daniel P. Flaherty
- Delbert
M. Shankel Structural Biology Center, University of Kansas Specialized Chemistry Center, 2034 Becker Drive, Lawrence, Kansas 66047, United States
| | - Justin R. Miller
- Carmen
and Ann Adams Department of Pediatrics, Division of Hematology and
Oncology, and the Karmanos Cancer Institute Molecular Therapeutics
Group, Wayne State University, 2228 Elliman Building, 421 East
Canfield, Detroit, Michigan 48201, United States
| | - Danielle M. Garshott
- Carmen
and Ann Adams Department of Pediatrics, Division of Hematology and
Oncology, and the Karmanos Cancer Institute Molecular Therapeutics
Group, Wayne State University, 2228 Elliman Building, 421 East
Canfield, Detroit, Michigan 48201, United States
| | - Michael Hedrick
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Palak Gosalia
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Yujie Li
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Monika Milewski
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Eliot Sugarman
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute at Lake Nona, Orlando, Florida 32827, United States
| | - Stefan Vasile
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute at Lake Nona, Orlando, Florida 32827, United States
| | - Sumeet Salaniwal
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Ying Su
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Layton H. Smith
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute at Lake Nona, Orlando, Florida 32827, United States
| | - Thomas D. Y. Chung
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Anthony B. Pinkerton
- Conrad
Prebys Center for Chemical Genomics, Sanford-Burnham Medical Research Institute, La
Jolla, California 92037, United States
| | - Jeffrey Aubé
- Delbert
M. Shankel Structural Biology Center, University of Kansas Specialized Chemistry Center, 2034 Becker Drive, Lawrence, Kansas 66047, United States
| | - Michael U. Callaghan
- Carmen
and Ann Adams Department of Pediatrics, Division of Hematology and
Oncology, and the Karmanos Cancer Institute Molecular Therapeutics
Group, Wayne State University, 2228 Elliman Building, 421 East
Canfield, Detroit, Michigan 48201, United States
| | - Jennifer E. Golden
- Delbert
M. Shankel Structural Biology Center, University of Kansas Specialized Chemistry Center, 2034 Becker Drive, Lawrence, Kansas 66047, United States
| | - Andrew M. Fribley
- Carmen
and Ann Adams Department of Pediatrics, Division of Hematology and
Oncology, and the Karmanos Cancer Institute Molecular Therapeutics
Group, Wayne State University, 2228 Elliman Building, 421 East
Canfield, Detroit, Michigan 48201, United States
| | - Randal J. Kaufman
- Program
in Degenerative Disease Research, Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, California 92037, United States
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Murai T, Nishi D, Hayashi S, Nakanishi W. Aromatic Selenoic, Selenothioic, and Diselenoic Acid Salts: Isolation, Characterization, and 77Se NMR Spectra, Together with Theoretical Elucidation. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2014. [DOI: 10.1246/bcsj.20140018] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Toshiaki Murai
- Department of Chemistry and Biomolecular Science, Faculty of Engineering, Gifu University
- JST, ACT-C
| | - Daisuke Nishi
- Department of Chemistry and Biomolecular Science, Faculty of Engineering, Gifu University
| | - Satoko Hayashi
- Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University
| | - Waro Nakanishi
- Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University
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5
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Nakai T, Nishino M, Hayashi S, Hashimoto M, Nakanishi W. Role of p(Z)-π(Ar/Nap) conjugation in structures of 1-(arylchalcogena)naphthalenes for Z = Te versus Se, S and O: experimental and theoretical investigations. Dalton Trans 2012; 41:7485-97. [PMID: 22584428 DOI: 10.1039/c2dt30516j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Magnitudes of the p(Z)-π(Ar/Nap) conjugation were evaluated for 1-(arylchalcogena)naphthalenes (1-(ArZ)Nap, 1-(p-YC(6)H(4)Z)C(10)H(7); 1 (Z = Te), 2 (Se), 3 (S) and 4 (O)). Structures of 1 were determined by X-ray analysis for Y = NMe(2) (b), OMe (c) and CN (i). For 1b and 1c that have electron donating Y, the Z-C(Ar) bond is located on the naphthyl plane with Z-C(Nap) being perpendicular to the aryl plane, which we define as (B: pd). On the other hand, the structure of 1i with electron donating Y is (A: pl), of which Z-C(Ar) is placed almost perpendicular to the naphthyl plane with Z-C(Nap) being located on the aryl plane. Each structure of 1a (Y = H), 1b, 1c, 1d (Me), 1e (F), 1f (Cl), 1g (Br), 1h (COOEt), 1i and 1j (NO(2)) was determined by NMR in chloroform-d. Structures of 1 in the solutions are (B: pd) for b, c and e that have electron donating Y, (A: pl) for f-j with electron accepting Y, and in equilibrium between (B: pd) and (A: pl) for a and d of which Y are rather neutral. The results for 2-4 are very similar to those of 1 in solutions. Quantum chemical calculations were performed on 1-4 with Y of a, b' (NH(2)), d, f and j. Magnitudes of the p(Z)-π(Ar/Nap) conjugation were well-evaluated by NBO (natural bond orbital) analysis. The values were 12.6 and 13.0 kcal mol(-1) for the typical forms of (A: pl) and (B: pd) of 1a, respectively, resulting in a much smaller energy difference between the two (0.4 kcal mol(-1)), which should correspond to the observed result. It is well-demonstrated that the p(Te)-π(Ar/Nap) conjugation operates effectively in 1, although the magnitudes increase in the order of Z = Te < Se < S < O. Thermal effect of the Gibbs free energies is shown to play an important role in the energy profiles of 1a-4a.
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Affiliation(s)
- Takahito Nakai
- Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan
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6
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Ferrara SJ, Mague JT, Donahue JP. Synthesis and Structures of Cuprous Triptycylthiolate Complexes. Inorg Chem 2012; 51:6567-76. [DOI: 10.1021/ic300124n] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Skylar J. Ferrara
- Department of Chemistry, Tulane University, 6400 Freret Street, New Orleans 70118-5698, United States
| | - Joel T. Mague
- Department of Chemistry, Tulane University, 6400 Freret Street, New Orleans 70118-5698, United States
| | - James P. Donahue
- Department of Chemistry, Tulane University, 6400 Freret Street, New Orleans 70118-5698, United States
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