1
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Brazeau-Henrie JT, Paquette AR, Boddy CN. In Vitro Biochemical Characterization of Excised Macrocyclizing Thioesterase Domains from Non-ribosomal Peptide Synthetases. Methods Mol Biol 2023; 2670:101-125. [PMID: 37184701 DOI: 10.1007/978-1-0716-3214-7_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Characterization of thioesterases (TEs) is an important step in understanding natural product biosynthesis. Studying non-ribosomal peptide synthetase (NRPS) TEs presents a unique set of challenges with specific cloning and expression issues as well as the challenging synthesis of the thioester peptides substrate required for characterization of the TE. In this method, we describe the cloning and expression of NRPS TEs, the synthesis of thioester peptides, and the in vitro biochemical characterization of the enzyme.
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Affiliation(s)
| | - André R Paquette
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, ON, Canada
| | - Christopher N Boddy
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, ON, Canada.
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2
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Gimenez D, Phelan A, Murphy CD, Cobb SL. Fengycin A Analogues with Enhanced Chemical Stability and Antifungal Properties. Org Lett 2021; 23:4672-4676. [PMID: 34077216 PMCID: PMC8289291 DOI: 10.1021/acs.orglett.1c01387] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Abstract
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Fengycins
are cyclic lipo-depsipeptides
produced by Bacillus spp. that display potent antifungal
properties but are chemically unstable. This instability has meant
that no total synthesis of any fengycin has been published. Here we
report the synthesis of fengycin A analogues that display enhanced
antifungal properties and chemical stability under both basic and
acidic conditions. The analogues prepared also demonstrate that the
fengycin core structure can be modified and simplified without the
loss of antifungal activity.
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Affiliation(s)
- Diana Gimenez
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Aoife Phelan
- School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Cormac D Murphy
- School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Steven L Cobb
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
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3
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N. N, Thimmalapura VM, Hosamani B, Prabhu G, Kumar LR, Sureshbabu VV. Thioacids – synthons for amide bond formation and ligation reactions: assembly of peptides and peptidomimetics. Org Biomol Chem 2018; 16:3524-3552. [DOI: 10.1039/c8ob00512e] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis of α-amino thioacids and peptide thioacids and their applications in chemoselective amide bond formation, ligation of peptides/proteins/glycopeptides and synthesis of peptidomimetics are reviewed.
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Affiliation(s)
- Narendra N.
- Department of Chemistry
- University College of Science
- Tumkur University
- Tumkur 572 103
- India
| | - Vishwanatha M. Thimmalapura
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - Basavaprabhu Hosamani
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - Girish Prabhu
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - L. Roopesh Kumar
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - Vommina V. Sureshbabu
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
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4
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Abstract
The present review offers an overview of nonclassical (e.g., with no pre- or in situ activation of a carboxylic acid partner) approaches for the construction of amide bonds. The review aims to comprehensively discuss relevant work, which was mainly done in the field in the last 20 years. Organization of the data follows a subdivision according to substrate classes: catalytic direct formation of amides from carboxylic and amines ( section 2 ); the use of carboxylic acid surrogates ( section 3 ); and the use of amine surrogates ( section 4 ). The ligation strategies (NCL, Staudinger, KAHA, KATs, etc.) that could involve both carboxylic acid and amine surrogates are treated separately in section 5 .
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Affiliation(s)
- Renata Marcia de Figueiredo
- Institut Charles Gerhardt de Montpellier (ICGM), UMR 5253-CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie , 8 rue de l'Ecole Normale, 34296 Montpellier Cedex 5, France
| | - Jean-Simon Suppo
- Institut Charles Gerhardt de Montpellier (ICGM), UMR 5253-CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie , 8 rue de l'Ecole Normale, 34296 Montpellier Cedex 5, France
| | - Jean-Marc Campagne
- Institut Charles Gerhardt de Montpellier (ICGM), UMR 5253-CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie , 8 rue de l'Ecole Normale, 34296 Montpellier Cedex 5, France
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5
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Facile synthesis of C-terminal peptide thioacids under mild conditions from N -sulfanylethylanilide peptides. Tetrahedron 2016. [DOI: 10.1016/j.tet.2015.12.070] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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6
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7
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Murray C, Dyer FB, Garner P. Solid phase synthesis and ligative processing of photocaged aziridine-2-carbonyl-terminated peptides. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.01.112] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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8
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Chou TC, Hsu YL, Lo LC. A Convenient Preparation of Bis(4-methoxyphenyl)methanethiol and Its Application in the Synthesis of Biotin Thioacid. J CHIN CHEM SOC-TAIP 2014. [DOI: 10.1002/jccs.201300664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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9
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Raz R, Rademann J. Fmoc-Based Synthesis of Peptide Thioacids for Azide Ligations via 2-Cyanoethyl Thioesters. Org Lett 2012; 14:5038-41. [DOI: 10.1021/ol302247h] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Richard Raz
- Medicinal Chemistry, Department of Pharmacy, Leipzig University, Brüderstr. 34, 01403 Leipzig, Germany, Leibniz Institute of Molecular Pharmacology (FMP), Robert-Rössle-Str. 10, 13125 Berlin, Germany, and Institute of Chemistry and Biochemistry, Free University Berlin, Takustr. 3, 14195 Berlin, Germany
| | - Jörg Rademann
- Medicinal Chemistry, Department of Pharmacy, Leipzig University, Brüderstr. 34, 01403 Leipzig, Germany, Leibniz Institute of Molecular Pharmacology (FMP), Robert-Rössle-Str. 10, 13125 Berlin, Germany, and Institute of Chemistry and Biochemistry, Free University Berlin, Takustr. 3, 14195 Berlin, Germany
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10
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11
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Affiliation(s)
- Kaname Sasaki
- a Centre de Recherche de Gif , Institut de Chimie des Substances Naturelles, CNRS , Gif-sur-Yvette, France
| | - Sylvain Aubry
- a Centre de Recherche de Gif , Institut de Chimie des Substances Naturelles, CNRS , Gif-sur-Yvette, France
| | - David Crich
- a Centre de Recherche de Gif , Institut de Chimie des Substances Naturelles, CNRS , Gif-sur-Yvette, France
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12
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Sasaki K, Crich D. Facile Amide Bond Formation from Carboxylic Acids and Isocyanates. Org Lett 2011; 13:2256-9. [DOI: 10.1021/ol200531k] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kaname Sasaki
- Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, 1 Avenue de la Terrasse, 91190 Gif-sur-Yvette, France
| | - David Crich
- Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, 1 Avenue de la Terrasse, 91190 Gif-sur-Yvette, France
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13
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Abstract
C-Terminal amino acid 9-fluorenylmethylthioesters may be carried through Boc chemistry solution phase peptide synthesis sequences. After insertion of the final residue in the form of an Fmoc carbamate, treatment with piperidine releases a seco-peptide as a C-terminal thioacid that on treatment with Sanger's reagent undergoes cyclization to a cyclic peptide. Cyclic penta- and hexapeptides have been synthesized in this manner, as has a cyclic glycopeptide. Functional group compatibility with alcohols and carboxylic acids is demonstrated.
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Affiliation(s)
- Kaname Sasaki
- Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
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14
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Crich D, Rahaman MY. Dihydro-3-(triphenylphosphoranylidene)-2,5-thiophendione: A Convenient Synthon for the Preparation of Substituted 1,4-Thiazepin-5-ones and Piperidinones via the Intermediacy of Thioacids. Tetrahedron 2010; 66:6383-6390. [PMID: 21170150 DOI: 10.1016/j.tet.2010.04.002] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Reaction of thiomaleic anhydride with triphenylphosphine gives the title compound which undergoes reaction with a variety of aldehydes to give a range of alkylidene thiomaleic anhydrides (substituted monothio itaconic anhydrides). Subsequent treatment with tert-butoxycarbonylamino-substituted thiols, or under radical conditions with tert-butoxycarbonylamino-substituted alkyl halides results in a series of substituted monothiomaleic anhydrides, that on exposure to trifluoroacetic acid and then base lead to thiocarboxyl substituted 1,4-thiazepin-5-ones and piperidinones, respectively, that are ultimately trapped by reaction with 2,4-dinitrobenzenesulfonamides to give the corresponding amides.
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Affiliation(s)
- David Crich
- Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
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15
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Assem N, Natarajan A, Yudin AK. Chemoselective Peptidomimetic Ligation Using Thioacid Peptides and Aziridine Templates. J Am Chem Soc 2010; 132:10986-7. [DOI: 10.1021/ja104488d] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Naila Assem
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario, Canada M5S 3H6
| | - Aditya Natarajan
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario, Canada M5S 3H6
| | - Andrei K. Yudin
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario, Canada M5S 3H6
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