1
|
Madaoui M, Datta D, Wassarman K, Zlatev I, Egli M, Ross BS, Manoharan M. A Chemical Approach to Introduce 2,6-Diaminopurine and 2-Aminoadenine Conjugates into Oligonucleotides without Need for Protecting Groups. Org Lett 2022; 24:6111-6116. [PMID: 35973215 PMCID: PMC9425559 DOI: 10.1021/acs.orglett.2c01848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
We report a simple, postsynthetic strategy for synthesis
of oligonucleotides
containing 2,6-diaminopurine nucleotides and 2-aminoadenine conjugates
using 2-fluoro-6-amino-adenosine. The strategy allows introduction
of 2,6-diaminopurine and other 2-amino group-containing ligands. The
strongly electronegative 2-fluoro deactivates 6-NH2 obviating
the need for any protecting group on adenine, and simple aromatic
nucleophilic substitution of fluorine makes reaction with aqueous
NH3 or R-NH2 feasible at the 2-position.
Collapse
Affiliation(s)
- Mimouna Madaoui
- Alnylam Pharmaceuticals, 675 West Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Dhrubajyoti Datta
- Alnylam Pharmaceuticals, 675 West Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Kelly Wassarman
- Alnylam Pharmaceuticals, 675 West Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Ivan Zlatev
- Alnylam Pharmaceuticals, 675 West Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Martin Egli
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee 37232, United States
| | - Bruce S Ross
- Ross Chemistry Consulting, El Granada, California 94018, United States
| | - Muthiah Manoharan
- Alnylam Pharmaceuticals, 675 West Kendall Street, Cambridge, Massachusetts 02142, United States
| |
Collapse
|
2
|
Wang H, Zhong YY, Xiao YC, Chen FE. Chemical and chemoenzymatic stereoselective synthesis of β-nucleosides and their analogues. Org Chem Front 2022. [DOI: 10.1039/d1qo01936h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
β-Nucleosides are fundamental building blocks of biological systems that are widely used as therapeutic agents for treating cancer and viral infections among others. In the last two years, nucleoside analogues...
Collapse
|
3
|
Ermolovich Y, Barysevich MV, Adamson J, Rogova O, Kaabel S, Järving I, Gathergood N, Snieckus V, Kananovich DG. Site-Selective and Stereoselective C-H Functionalization of N-Cyclopropylamides via a Directed Remote Metalation Strategy. Org Lett 2019; 21:969-973. [PMID: 30715898 DOI: 10.1021/acs.orglett.8b03955] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A new methodology for site-selective and stereoselective C-H functionalization of aminocyclopropanes via directed remote lithiation has been developed. Treatment of N-directing group (DG = pivaloyl, tetramethylsuccinimidoyl) arylcyclopropanes with t-BuLi results in a clean β-lithiation and, following quench with electrophiles, leads to a range of cyclopropane derivatives. Sequential double lithiation-methylation to give a dimethylated cyclopropane has been achieved. X-ray, NMR, and computational studies allow rationalization of syn-DG β-deprotonation selectivity via a DG-lithium base coordinated complex.
Collapse
Affiliation(s)
- Yuri Ermolovich
- Department of Chemistry and Biotechnology, School of Science , Tallinn University of Technology , Tallinn 12618 , Estonia.,Department of Drug Design and Pharmacology , University of Copenhagen , DK-2100 Copenhagen , Denmark
| | - Maryia V Barysevich
- Department of Chemistry and Biotechnology, School of Science , Tallinn University of Technology , Tallinn 12618 , Estonia.,Laboratory of Steroids, Institute of Bioorganic Chemistry , National Academy of Sciences of Belarus , Minsk 220141 , Belarus
| | - Jasper Adamson
- National Institute of Chemical Physics and Biophysics , Tallinn 12618 , Estonia
| | - Oksana Rogova
- Department of Drug Design and Pharmacology , University of Copenhagen , DK-2100 Copenhagen , Denmark
| | - Sandra Kaabel
- Department of Chemistry and Biotechnology, School of Science , Tallinn University of Technology , Tallinn 12618 , Estonia
| | - Ivar Järving
- Department of Chemistry and Biotechnology, School of Science , Tallinn University of Technology , Tallinn 12618 , Estonia
| | - Nicholas Gathergood
- Department of Chemistry and Biotechnology, School of Science , Tallinn University of Technology , Tallinn 12618 , Estonia
| | - Victor Snieckus
- Department of Chemistry , Queen's University , Kingston , ON K7L 3N6 , Canada
| | - Dzmitry G Kananovich
- Department of Chemistry and Biotechnology, School of Science , Tallinn University of Technology , Tallinn 12618 , Estonia
| |
Collapse
|
4
|
Mata G, Luedtke NW. Stereoselective N-Glycosylation of 2-Deoxythioribosides for Fluorescent Nucleoside Synthesis. J Org Chem 2012; 77:9006-17. [DOI: 10.1021/jo3014929] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Guillaume Mata
- Institute of Organic Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich,
Switzerland
| | - Nathan W. Luedtke
- Institute of Organic Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich,
Switzerland
| |
Collapse
|
5
|
De Benedetti EC, Rivero CW, Britos CN, Lozano ME, Trelles JA. Biotransformation of 2,6-diaminopurine nucleosides by immobilized Geobacillus stearothermophilus. Biotechnol Prog 2012; 28:1251-6. [PMID: 22837142 DOI: 10.1002/btpr.1602] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2012] [Revised: 07/13/2012] [Indexed: 01/07/2023]
Abstract
An efficient and green bioprocess to obtain 2,6-diaminopurine nucleosides using thermophilic bacteria is herein reported. Geobacillus stearothermophilus CECT 43 showed a conversion rate of 90 and 83% at 2 h to obtain 2,6-diaminopurine-2'-deoxyriboside and 2,6-diaminopurine riboside, respectively. The selected biocatalyst was successfully stabilized in an agarose matrix and used to produce up to 23.4 g of 2,6-diaminopurine-2'-deoxyriboside in 240 h of process. These nucleoside analogues can be used as prodrug precursors or in antisense oligonucleotide synthesis.
Collapse
Affiliation(s)
- Eliana C De Benedetti
- Laboratorio de Investigaciones en Biotecnología Sustentable, Universidad Nacional de Quilmes, Roque Saenz Peña 352, Bernal B1868BXD, Argentina
| | | | | | | | | |
Collapse
|
6
|
Intramolecular glycosylation as a regio- and stereocontrolled approach for the synthesis of 8-oxo-purine nucleosides. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.06.055] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
|
7
|
Yang F, Zhu Y, Yu B. A dramatic concentration effect on the stereoselectivity of N-glycosylation for the synthesis of 2′-deoxy-β-ribonucleosides. Chem Commun (Camb) 2012; 48:7097-9. [DOI: 10.1039/c2cc33155a] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|