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Gorbunov A, Bezzubov S, Malakhova M, Kovalev V, Vatsouro I. Synthesis and crystal structures of 5,17-di-bromo-26,28-dihy-droxy-25,27-dipropynyloxycalix[4]arene, 5,17-di-bromo-26,28-dipropoxy-25,27-dipropynyloxycalix[4]arene and 25,27-bis-(2-azido-eth-oxy)-5,17-di-bromo-26,28-di-hydroxy-calix[4]arene. Acta Crystallogr E Crystallogr Commun 2024; 80:555-560. [PMID: 38845710 PMCID: PMC11151303 DOI: 10.1107/s2056989024003785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Accepted: 04/24/2024] [Indexed: 06/09/2024]
Abstract
The calixarenes, 5,17-di-bromo-26,28-dihy-droxy-25,27-dipropynyloxycalix[4]arene (C34H26Br2O4, 1), 5,17-di-bromo-26,28-dipropoxy-25,27-dipropynyloxycalix[4]arene (C40H38Br2O4, 2) and 25,27-bis-(2-azido-eth-oxy)-5,17-di-bromo-26,28-di-hydroxy-calix[4]arene (C32H28Br2N6O4, 3) possess a pinched cone mol-ecular shape for 1 and 3, and a 1,3-alternate shape for compound 2. In calixarenes 1 and 3, the cone conformations are additionally stabilized by intra-molecular O-H⋯O hydrogen bonds, while in calixarene 2 intra-molecular Br⋯Br inter-actions consolidate the 1,3-alternate mol-ecular conformation. The dense crystal packing of the cone dialkyne 1 is a consequence of π-π, C-H⋯π and C-H⋯O inter-actions. In the crystal of the diazide 3, there are large channels extending parallel to the c axis, which are filled by highly disordered CH2Cl2 solvent mol-ecules. Their contribution to the intensity data was removed by the SQUEEZE procedure that showed an accessible void volume of 585 Å3 where there is room for 4.5 CH2Cl2 solvent mol-ecules per unit cell. Rigid mol-ecules of the 1,3-alternate calixarene 2 form a columnar head-to-tail packing parallel to [010] via van der Waals inter-actions, and the resulting columns are held together by weak C-H⋯π contacts.
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Affiliation(s)
- Alexander Gorbunov
- Department of Chemistry, Lomonosov Moscow State University, Lenin’s Hills, 1-3, Moscow, 119991, Russian Federation
| | - Stanislav Bezzubov
- N. S. Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, Moscow 119991, Russian Federation
| | - Maria Malakhova
- Department of Chemistry, Lomonosov Moscow State University, Lenin’s Hills, 1-3, Moscow, 119991, Russian Federation
| | - Vladimir Kovalev
- Department of Chemistry, Lomonosov Moscow State University, Lenin’s Hills, 1-3, Moscow, 119991, Russian Federation
| | - Ivan Vatsouro
- Department of Chemistry, Lomonosov Moscow State University, Lenin’s Hills, 1-3, Moscow, 119991, Russian Federation
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2
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Morie M, Sekiya R, Haino T. Synthesis and Conformational Characteristics of Calix[4]arene Oligomers. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20210287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Masayuki Morie
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8526, Japan
| | - Ryo Sekiya
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8526, Japan
| | - Takeharu Haino
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8526, Japan
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3
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Del Giudice D, Spatola E, Cacciapaglia R, Casnati A, Baldini L, Ercolani G, Di Stefano S. Time Programmable Locking/Unlocking of the Calix[4]arene Scaffold by Means of Chemical Fuels. Chemistry 2020; 26:14954-14962. [PMID: 32757429 DOI: 10.1002/chem.202002574] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 07/18/2020] [Indexed: 12/30/2022]
Abstract
In this work, we report that 2-cyano-2-phenylpropanoic acid and its p-Cl, p-CH3 and p-OCH3 derivatives can be used as chemical fuels to control the geometry of the calix[4]arene scaffold in its cone conformation. It is shown that, under the action of the fuel, the cone calix[4]arene platform assumes a "locked" shape with two opposite aromatic rings strongly convergent and the other two strongly divergent ("pinched cone" conformation). Only when the fuel is exhausted, the cone calix[4]arene scaffold returns to its resting, "unlocked" shape. Remarkably, the duration of the "locked" state can be controlled at will by varying the fuel structure or amount. A kinetic study of the process shows that the consume of the fuel is catalyzed by the "unlocked" calixarene that behaves as an autocatalyst for its own production. A mechanism is proposed for the reaction of fuel consumption.
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Affiliation(s)
- Daniele Del Giudice
- Dipartimento di Chimica, Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma-Meccanismi di Reazione, P.le A. Moro 5, 00185, Roma, Italy
| | - Emanuele Spatola
- Dipartimento di Chimica, Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma-Meccanismi di Reazione, P.le A. Moro 5, 00185, Roma, Italy
| | - Roberta Cacciapaglia
- Dipartimento di Chimica, Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma-Meccanismi di Reazione, P.le A. Moro 5, 00185, Roma, Italy
| | - Alessandro Casnati
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità, Ambientale, Università degli Studi di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Laura Baldini
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità, Ambientale, Università degli Studi di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Gianfranco Ercolani
- Dipartimento di Scienze e Tecnologie Chimiche, Università di Roma Tor Vergata, Via della Ricerca Scientifica, 00133, Roma, Italy
| | - Stefano Di Stefano
- Dipartimento di Chimica, Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma-Meccanismi di Reazione, P.le A. Moro 5, 00185, Roma, Italy
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4
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Bardi B, Tosi I, Faroldi F, Baldini L, Sansone F, Sissa C, Terenziani F. A calixarene-based fluorescent ratiometric temperature probe. Chem Commun (Camb) 2019; 55:8098-8101. [PMID: 31232416 DOI: 10.1039/c9cc04577e] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
We report the first macrocycle-based ratiometric molecular thermometer exploiting the conformational thermosensitivity of a calixarene functionalized with two different fluorophores. Thanks to the dependence on temperature of the efficiency of excitation energy transfer between the organic fluorophores, the thermometer works over a 60 °C-wide temperature range with a sensitivity of 4% °C-1.
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Affiliation(s)
- Brunella Bardi
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
| | - Irene Tosi
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
| | - Federica Faroldi
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
| | - Laura Baldini
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
| | - Francesco Sansone
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
| | - Cristina Sissa
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
| | - Francesca Terenziani
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
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5
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Kilburn JP, Kehler J, Langgård M, Erichsen MN, Leth-Petersen S, Larsen M, Christoffersen CT, Nielsen J. N-Methylanilide and N-methylbenzamide derivatives as phosphodiesterase 10A (PDE10A) inhibitors. Bioorg Med Chem 2013; 21:6053-62. [DOI: 10.1016/j.bmc.2013.07.030] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2013] [Revised: 07/09/2013] [Accepted: 07/12/2013] [Indexed: 10/26/2022]
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Frontera A, Quiñonero D, Deyà PM. Cation-π and anion-π interactions. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2011. [DOI: 10.1002/wcms.14] [Citation(s) in RCA: 112] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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7
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Gruber T, Seichter W, Weber E. Crystal structures of a calix[4]arene controlled by two affixed pyrene units. Supramol Chem 2008. [DOI: 10.1080/10610270701854945] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Tobias Gruber
- a Institut für Organische Chemie, Technische Universität Bergakademie Freiberg , Leipziger Strasse, Freiberg/Sachsen, Germany
| | - Wilhelm Seichter
- a Institut für Organische Chemie, Technische Universität Bergakademie Freiberg , Leipziger Strasse, Freiberg/Sachsen, Germany
| | - Edwin Weber
- a Institut für Organische Chemie, Technische Universität Bergakademie Freiberg , Leipziger Strasse, Freiberg/Sachsen, Germany
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8
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Emerging trends in molecular recognition: Utility of weak aromatic interactions. Bioorg Med Chem 2008; 16:126-43. [DOI: 10.1016/j.bmc.2007.09.023] [Citation(s) in RCA: 90] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2007] [Revised: 09/03/2007] [Accepted: 09/12/2007] [Indexed: 11/21/2022]
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9
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Yue NLS, Jennings MC, Puddephatt RJ. Ring-opening polymerization of coordination complexes: silver(i) complexes with bis(amidopyridine) ligands derived from thiophene. Dalton Trans 2006:3886-93. [PMID: 16896448 DOI: 10.1039/b605340h] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The thiophene-based bis(N-methylamido-pyridine) ligand SC4H2-2,5-{C(=O)N(Me)-4-C5H4N}2 reacts with silver(I) salts AgX to give 1 : 1 complexes, which are characterized in the solid state as the macrocyclic complexes [Ag(2){SC4H2-2,5-(CONMe-4-C5H4N)2}2][X]2, which have the cis conformation of the C(=O)N(Me) group, when X = CF3CO2, NO3, or CF3SO3 but as the polymeric complex [Ag(n){SC4H2-2,5-(CONMe-4-C5H4N)2}n][X]n, with the unusual trans conformation of the C(=O)N(Me) group, when X = PF6. The bis(amido-pyridine) ligand SC4H2-2,5-{C(=O)NHCH2-3-C5H4N}2 reacts with silver(I) trifluoroacetate to give the polymeric complex [Ag(n){SC4H2-2,5-(CONHCH2-3-C5H4N)2}n][X]n, X = CF3CO2. The macrocyclic complexes contain transannular argentophilic secondary bonds. The polymers self assemble into sheet structures through interchain C=O...Ag and S...Ag bonds in [Ag(n){SC4H2-2,5-(CONMe-4-C5H4N)2}n][PF6]n and through Ag...Ag, C=O...Ag and Ag...O(trifluoroacetate)...HN secondary bonds in [Ag(n){SC4H2-2,5-(CONHCH2-3-C5H4N)2}n][CF3CO2]n.
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Affiliation(s)
- Nancy L S Yue
- Department of Chemistry, University of Western Ontario, London, Canada N6A 5B7
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10
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Yue NLS, Jennings MC, Puddephatt RJ. Disilver(I) macrocycles: variation of cavity size with anion binding. Inorg Chem 2005; 44:1125-31. [PMID: 15859294 DOI: 10.1021/ic048549c] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Reaction of the N-methylated bis(amidopyridine) ligand, LL = C6H4(1,3-CONMe-4-C5H4N)2, with the silver salts AgNO3, AgO2CCF3, AgO3SCF3, AgBF4, and AgPF6 gave the corresponding cationic disilver(I) macrocycles [Ag2(micro-LL)2]X2, 2a-e. The transannular silver...silver distance in the macrocycles varies greatly from 2.99 to 7.03 A, and these differences arise through a combination of different modes ofanion binding and from the presence or absence of silver...silver secondary bonding. In all complexes, the ligand adopts a conformation in which the methyl group and oxygen atom of the MeNCO units are mutually cis, but the overall macrocycle can exist in either boat (X = PF6 only) or chair conformation. Short transannular silver...silver distances are found in complexes 2b,c, in which the anions CF3CO2- and CF3SO3- bind above and below the macrocycle, but longer silver...silver distances are found for 2a,d,e, in which the anions are present, at least in part, inside the disilver macrocycle. Easy anion exchange occurs in solution, and studies using ESI-MS indicate that the anion binding to form [Ag2X(micro-LL)2]+ follows the sequence X = CF3CO2- > NO3- > CF3SO3-.
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Affiliation(s)
- Nancy L S Yue
- Department of Chemistry, University of Western Ontario, London, Canada N6A 5B7
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11
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Conformations and Structures of Two Novel Upper Rim Disubstituted Derivatives of Tetra-O-alkylcalix[4]arene: The Effect of Substituents. J INCL PHENOM MACRO 2005. [DOI: 10.1007/s10847-004-6331-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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12
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Segura M, Bricoli B, Casnati A, Muñoz EM, Sansone F, Ungaro R, Vicent C. A prototype calix[4]arene-based receptor for carbohydrate recognition containing peptide and phosphate binding groups. J Org Chem 2003; 68:6296-303. [PMID: 12895063 DOI: 10.1021/jo034471q] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A novel class of macrobicyclic receptors for carbohydrate recognition based on upper rim, peptide-bridged calix[4]arenes has been designed and synthesized. Receptor 12, in which a charged phosphate group cooperates with peptide hydrogen-bonding donor and acceptor groups in the binding process, is the most efficient and selective in the complexation of simple carbohydrate derivatives. The selectivity observed is toward beta-glucoside 13a, which is better bound (DeltaG degrees = 19.6 kJ mol(-)(1)) compared to the corresponding alpha anomer 13b (DeltaG degrees = 17.0 kJ mol(-)(1)) and to the beta-galactoside 13c (DeltaG degrees = 17.7 kJ mol(-)(1)) in CDCl(3). A substantial drop in the stability constant is observed by esterification of the phosphate group in the host 12 or by alkylation of the OH groups in the 2 and 3 positions in the beta-glucoside and beta-galactoside derivatives. On the basis of a careful analysis of the (1)H NMR data available, a binding mode of the beta-octylglucoside 13a to receptor 12 is proposed.
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Affiliation(s)
- Margarita Segura
- Dipartimento di Chimica Organica e Industriale, Università degli Studi, Parco Area delle Scienze 17/A, I-43100 Parma, Italy
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13
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Krebs FC, Jørgensen M. Synthesis and structural characterization of new stiff rod oligomeric domains by X-ray crystallography and NMR. J Org Chem 2002; 67:7511-8. [PMID: 12375986 DOI: 10.1021/jo025980f] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The monomers N,N'-dibenzylbenzene-1,4-diamine (1), N,N'-dibenzylnaphthalene-1,5-diamine (2), and N,N'-dibenzylanthracene-1,9-diamine (3) were reacted with phosgene in the presence of a base to produce the corresponding N,N'-dibenzyl-1,4-bis(chlorocarbonylamino)benzene (4), N,N'-dibenzyl-1,5-bis(chlorocarbonylamino)naphthalene (5), and N,N'-dibenzyl-9,10-bis(chlorocarbonylamino)anthracene (6). These monomers were used to create zigzag type stacks, in a stepwise fashion, of trimers and 9-mers of either 1,4-diureidobenzenes ((Phe)K(3) and (Phe)K(9)) or 1,5-diureidonaphthalenes ((Nap)K(3) and (Nap)K(9)). A byproduct in the formation of (Phe)K(9) was a cyclic hexamer (Phe)K(6). NMR gave evidence of the structure in solution while X-ray crystallographic information was obtained for 5, 6, (Nap)K(3), and the cyclic (Phe)K(6).
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Affiliation(s)
- Frederik C Krebs
- The Danish Polymer Center, Risø National Laboratory, P.O. Box 49, Roskilde, Denmark
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Dondoni A, Kleban M, Hu X, Marra A, Banks HD. Glycoside-clustering round calixarenes toward the development of multivalent ligands. Synthesis and conformational analysis of Calix[4]arene O- and C-glycoconjugates. J Org Chem 2002; 67:4722-33. [PMID: 12098281 DOI: 10.1021/jo020178z] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Bis- and tetra-O- and C-glycosyl calixarenes (calixsugars) have been prepared by tethering carbohydrate moieties to a tetrapropoxycalix[4]arene scaffold through alkyl chains. Two methodologies have been employed. One consisted of the stereoselective multiple glycosylation of upper rim calix[4]arene polyols leading to calix-O-glycosides; the other involved a multiple Wittig olefination of upper rim calix[4]arene-derived polyaldehydes by the use of sugar phosphoranes and reduction of the alkene double bonds affording calix-C-glycosides. The NMR spectra and NOE experiments of bis-glycosylated products indicate that compounds bearing sugar-protected residues exist preferentially in solution in a flattened cone arrangement (far conformation) whereas deprotected derivatives adopt a close conformation. Calculations by molecular mechanics of the latter compounds point to a close conformation as well in gas phase.
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Affiliation(s)
- Alessandro Dondoni
- Dipartimento di Chimica, Laboratorio di Chimica Organica, Università di Ferrara, 44100 Ferrara, Italy.
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Takenaka K, Obora Y, Jiang LH, Tsuji Y. Platinum(II) and Palladium(II) Complexes of Bis(diphenylphosphino)calix[4]arene Tetrabenzyl Ether: Fluxional Behavior Caused by Two Motions. Organometallics 2002. [DOI: 10.1021/om010882q] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kazuhiro Takenaka
- Catalysis Research Center and Division of Chemistry, Graduate School of Science, Hokkaido University, Sapporo 060-0811, Japan
| | - Yasushi Obora
- Catalysis Research Center and Division of Chemistry, Graduate School of Science, Hokkaido University, Sapporo 060-0811, Japan
| | - Li Hong Jiang
- Catalysis Research Center and Division of Chemistry, Graduate School of Science, Hokkaido University, Sapporo 060-0811, Japan
| | - Yasushi Tsuji
- Catalysis Research Center and Division of Chemistry, Graduate School of Science, Hokkaido University, Sapporo 060-0811, Japan
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Jørgensen M, Krebs FC. A new prearranged tripodant ligand N,N′,N″-trimethyl-N,N′,N″-tris(3-pyridyl)-1,3,5-benzene tricarboxamide is easily obtained via the N-methyl amide effect. Tetrahedron Lett 2001. [DOI: 10.1016/s0040-4039(01)00800-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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17
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Abstract
Anion binding by neutral hosts in organic solvents can be inhibited by the presence of alkali metal cations. The binding inhibition is due to salt ion-pairing which increases in the order Cs(+) < K(+) < Na(+). The binding inhibition can be reversed by using heteroditopic hosts that simultaneously bind both the metal cation and the anion. The largest cation-induced enhancements are observed with the less basic anions.
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18
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Deetz MJ, Shang M, Smith BD. A Macrobicyclic Receptor with Versatile Recognition Properties: Simultaneous Binding of an Ion Pair and Selective Complexation of Dimethylsulfoxide. J Am Chem Soc 2000. [DOI: 10.1021/ja994487r] [Citation(s) in RCA: 160] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Martin J. Deetz
- Contribution from the Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556-5670
| | - Maoyu Shang
- Contribution from the Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556-5670
| | - Bradley D. Smith
- Contribution from the Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556-5670
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