1
|
Sipka G, Nagy L, Magyar M, Akhtar P, Shen JR, Holzwarth AR, Lambrev PH, Garab G. Light-induced reversible reorganizations in closed Type II reaction centre complexes: physiological roles and physical mechanisms. Open Biol 2022; 12:220297. [PMID: 36514981 PMCID: PMC9748786 DOI: 10.1098/rsob.220297] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
The purpose of this review is to outline our understanding of the nature, mechanism and physiological significance of light-induced reversible reorganizations in closed Type II reaction centre (RC) complexes. In the so-called 'closed' state, purple bacterial RC (bRC) and photosystem II (PSII) RC complexes are incapable of generating additional stable charge separation. Yet, upon continued excitation they display well-discernible changes in their photophysical and photochemical parameters. Substantial stabilization of their charge-separated states has been thoroughly documented-uncovering light-induced reorganizations in closed RCs and revealing their physiological importance in gradually optimizing the operation of the photosynthetic machinery during the dark-to-light transition. A range of subtle light-induced conformational changes has indeed been detected experimentally in different laboratories using different bRC and PSII-containing preparations. In general, the presently available data strongly suggest similar structural dynamics of closed bRC and PSII RC complexes, and similar physical mechanisms, in which dielectric relaxation processes and structural memory effects of proteins are proposed to play important roles.
Collapse
Affiliation(s)
- G. Sipka
- Institute of Plant Biology, Biological Research Centre, Szeged, Temesvári körút 62, 6726 Szeged, Hungary
| | - L. Nagy
- Institute of Plant Biology, Biological Research Centre, Szeged, Temesvári körút 62, 6726 Szeged, Hungary,Institute of Medical Physics and Informatics, University of Szeged, Rerrich B. tér 1, 6720 Szeged, Hungary
| | - M. Magyar
- Institute of Plant Biology, Biological Research Centre, Szeged, Temesvári körút 62, 6726 Szeged, Hungary
| | - P. Akhtar
- Institute of Plant Biology, Biological Research Centre, Szeged, Temesvári körút 62, 6726 Szeged, Hungary
| | - J.-R. Shen
- Institute of Interdisciplinary Science, and Graduate School of Natural Science and Technology, Okayama University, 700-8530 Okayama, Japan,Institute of Botany, Chinese Academy of Sciences, 100093 Beijing, People's Republic of China
| | - A. R. Holzwarth
- Max-Planck-Institute for Chemical Energy Conversion, 45470 Mülheim a.d. Ruhr, Germany
| | - P. H. Lambrev
- Institute of Plant Biology, Biological Research Centre, Szeged, Temesvári körút 62, 6726 Szeged, Hungary
| | - G. Garab
- Institute of Plant Biology, Biological Research Centre, Szeged, Temesvári körút 62, 6726 Szeged, Hungary,Department of Physics, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic
| |
Collapse
|
2
|
Poluektov OG, Utschig LM. Quantum Sensing of Electron Transfer Pathways in Natural Photosynthesis Using Time-Resolved High-Field Electron Paramagnetic Resonance/Electron-Nuclear Double Resonance Spectroscopy. J Phys Chem B 2021; 125:4025-4030. [PMID: 33877826 DOI: 10.1021/acs.jpcb.1c00946] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Photosynthetic integral membrane reaction center (RC) proteins capture and convert sunlight into chemical energy via efficient charge separation achieved through a series of rapid, photoinitiated electron transfer steps. These fast electron transfers create an entangled spin qubit (radical) pair that contains detailed information about the weak magnetic interactions, structure, and dynamics of localized protein environments involved in charge separation events. Herein, we investigate how these entangled electron spin qubits interact with nuclear spins of the protein environment using the high spectral resolution of 130 GHz electron paramagnetic resonance (EPR) and electron-nuclear double resonance (ENDOR). Spectroscopic interrogation enabled the observation and probing of protons located in the electron transfer pathway between the membrane-spanning electron pair P+QA- (where P+ is the primary donor, a special pair of bacteriochlorophylls, and QA is the primary quinone acceptor) in the bacterial RC. Spectroscopic analysis reveals hydrogen-bonding interactions involved in regulating the route that light-induced electrons travel through the RC protein during charge separation.
Collapse
Affiliation(s)
- Oleg G Poluektov
- Chemical Sciences and Engineering Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| | - Lisa M Utschig
- Chemical Sciences and Engineering Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| |
Collapse
|
3
|
Maróti P. Thermodynamic View of Proton Activated Electron Transfer in the Reaction Center of Photosynthetic Bacteria. J Phys Chem B 2019; 123:5463-5473. [PMID: 31181159 DOI: 10.1021/acs.jpcb.9b03506] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The temperature dependence of the sequential coupling of proton transfer to the second interquinone electron transfer is studied in the reaction center proteins of photosynthetic bacteria modified by different mutations and treatment by divalent cations. The Eyring plots of kinetics were evaluated by the Marcus theory of electron and proton transfer. In mutants of electron transfer limitation (including the wild type), the observed thermodynamic parameters had to be corrected for those of the fast proton pre-equilibrium. The electron transfer is nonadiabatic with transmission coefficient 6 × 10-4, and the reorganization energy amounts to 1.2 eV. If the proton transfer is the rate limiting step, the reorganization energy and the works terms fall in the range of 200-500 meV, depending on the site of damage in the proton transfer chain. The product term is 100-150 meV larger than the reactant term. While the electron transfer mutants have a low free energy of activation (∼200 meV), the proton transfer variants show significantly elevated levels of the free energy barrier (∼500 meV). The second electron transfer in the bacterial reaction center can serve as a model system of coupled electron and proton transfer in other proteins or ion channels.
Collapse
Affiliation(s)
- Péter Maróti
- Institute of Medical Physics , University of Szeged , Rerrich Béla tér 1 , Szeged , H-6720 , Hungary
| |
Collapse
|
4
|
Seyedi S, Matyushov DV. Termination of Biological Function at Low Temperatures: Glass or Structural Transition? J Phys Chem Lett 2018; 9:2359-2366. [PMID: 29669418 DOI: 10.1021/acs.jpclett.8b00537] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Energy of life is produced by electron transfer in energy chains of respiration or photosynthesis. A small input of free energy available to biology puts significant restrictions on how much free energy can be lost in each electron-transfer reaction. We advocate the view that breaking ergodicity, leading to violation of the fluctuation-dissipation theorem (FDT), is how proteins achieve high reaction rates without sacrificing the reaction free energy. Here we show that a significant level of nonergodicity, represented by a large extent of the configurational temperature over the kinetic temperature, is maintained in the entire physiological range for the cytochrome c electron transfer protein. The protein returns to the state consistent with the FDT below the crossover temperature close to the temperature of the protein glass transition. This crossover leads to a sharp increase in the activation barrier of electron transfer and is displayed by a kink in the Arrhenius plot for the reaction rate constant.
Collapse
Affiliation(s)
- Salman Seyedi
- Department of Physics and School of Molecular Sciences , Arizona State University , P.O. Box 871504, Tempe , Arizona 85287-1504 , United States
| | - Dmitry V Matyushov
- Department of Physics and School of Molecular Sciences , Arizona State University , P.O. Box 871504, Tempe , Arizona 85287-1504 , United States
| |
Collapse
|
5
|
Zhang X, Gunner MR. Affinity and activity of non-native quinones at the Q(B) site of bacterial photosynthetic reaction centers. PHOTOSYNTHESIS RESEARCH 2014; 120:181-96. [PMID: 23715773 PMCID: PMC4442677 DOI: 10.1007/s11120-013-9850-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Accepted: 05/08/2013] [Indexed: 05/11/2023]
Abstract
Purple, photosynthetic reaction centers from Rhodobacter sphaeroides bacteria use ubiquinone (UQ10) as both primary (Q(A)) and secondary (Q(B)) electron acceptors. Many quinones reconstitute Q(A) function, while a few will act as Q(B). Nine quinones were tested for their ability to bind and reconstitute Q(A) and Q(B) functions. Only ubiquinone (UQ) reconstitutes both functions in the same protein. The affinities of the non-native quinones for the Q(B) site were determined by a competitive inhibition assay. The affinities of benzoquinones, naphthoquinone (NQ), and 2-methyl-NQ for the Q(B) site are 7 ± 3 times weaker than that at Q(A) site. However, di-ortho-substituted NQs and anthraquinone bind tightly to the Q(A) site (K d ≤ 200 nM), and ≥1,000 times more weakly to the Q(B) site, perhaps setting a limit on the size of the site. With a low-potential electron donor, 2-methyl, 3-dimethylamino-1,4-NQ, (Me-diMeAm-NQ) at Q(A), Q(B) reduction is 260 meV, more favorable than with UQ as Q(A). Electron transfer from Me-diMeAm-NQ at the Q(A) site to NQ at the Q(B) site can be detected. In the Q(B) site, the NQ semiquinone is estimated to be ≈60-100 meV higher in energy than the UQ semiquinone, while in the Q(A) site, the semiquinone energy level is similar or lower with NQ than with UQ. Thus, the NQ semiquinone is more stable in the Q(A) than in the Q(B) site. In contrast, the native UQ semiquinone is ≈60 meV lower in energy in the Q(B) than in the Q(A) site, stabilizing forward electron transfer from Q(A) to Q(B).
Collapse
Affiliation(s)
| | - M. R. Gunner
- To whom correspondence should be addressed. Telephone: 212-650-5557. Fax: 212-650-6940
| |
Collapse
|
6
|
Guo Y, Tan J. Applications of delayed fluorescence from photosystem II. SENSORS (BASEL, SWITZERLAND) 2013; 13:17332-45. [PMID: 24351639 PMCID: PMC3892870 DOI: 10.3390/s131217332] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2013] [Revised: 12/09/2013] [Accepted: 12/11/2013] [Indexed: 12/18/2022]
Abstract
While photosystem II (PSII) of plants utilizes light for photosynthesis, part of the absorbed energy may be reverted back and dissipated as long-term fluorescence (delayed fluorescence or DF). Because the generation of DF is coupled with the processes of forward photosynthetic activities, DF contains the information about plant physiological states and plant-environment interactions. This makes DF a potentially powerful biosensing mechanism to measure plant photosynthetic activities and environmental conditions. While DF has attracted the interest of many researchers, some aspects of it are still unknown because of the complexity of photosynthetic system. In order to provide a holistic picture about the usefulness of DF, it is meaningful to summarize the research on DF applications. In this short review, available literature on applications of DF from PSII is summarized.
Collapse
Affiliation(s)
- Ya Guo
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA; E-Mail:
| | - Jinglu Tan
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA; E-Mail:
| |
Collapse
|
7
|
Mauzerall D. Thermodynamics of primary photosynthesis. PHOTOSYNTHESIS RESEARCH 2013; 116:363-366. [PMID: 24037682 PMCID: PMC3825034 DOI: 10.1007/s11120-013-9919-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Accepted: 08/27/2013] [Indexed: 06/02/2023]
Abstract
The thermodynamics of photosynthesis has been much discussed, but recent articles have pointed to some confusion on the subject. The aim of this review is to clarify a limited part of this state of affairs.
Collapse
Affiliation(s)
- D Mauzerall
- Rockefeller University, 1230 York Ave, New York, NY, 10065, USA,
| |
Collapse
|
8
|
Gunner MR, Amin M, Zhu X, Lu J. Molecular mechanisms for generating transmembrane proton gradients. BIOCHIMICA ET BIOPHYSICA ACTA 2013; 1827:892-913. [PMID: 23507617 PMCID: PMC3714358 DOI: 10.1016/j.bbabio.2013.03.001] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2012] [Revised: 01/28/2013] [Accepted: 03/01/2013] [Indexed: 01/02/2023]
Abstract
Membrane proteins use the energy of light or high energy substrates to build a transmembrane proton gradient through a series of reactions leading to proton release into the lower pH compartment (P-side) and proton uptake from the higher pH compartment (N-side). This review considers how the proton affinity of the substrates, cofactors and amino acids are modified in four proteins to drive proton transfers. Bacterial reaction centers (RCs) and photosystem II (PSII) carry out redox chemistry with the species to be oxidized on the P-side while reduction occurs on the N-side of the membrane. Terminal redox cofactors are used which have pKas that are strongly dependent on their redox state, so that protons are lost on oxidation and gained on reduction. Bacteriorhodopsin is a true proton pump. Light activation triggers trans to cis isomerization of a bound retinal. Strong electrostatic interactions within clusters of amino acids are modified by the conformational changes initiated by retinal motion leading to changes in proton affinity, driving transmembrane proton transfer. Cytochrome c oxidase (CcO) catalyzes the reduction of O2 to water. The protons needed for chemistry are bound from the N-side. The reduction chemistry also drives proton pumping from N- to P-side. Overall, in CcO the uptake of 4 electrons to reduce O2 transports 8 charges across the membrane, with each reduction fully coupled to removal of two protons from the N-side, the delivery of one for chemistry and transport of the other to the P-side.
Collapse
Affiliation(s)
- M R Gunner
- Department of Physics, City College of New York, New York, NY 10031, USA.
| | | | | | | |
Collapse
|
9
|
Onidas D, Sipka G, Asztalos E, Maróti P. Mutational control of bioenergetics of bacterial reaction center probed by delayed fluorescence. BIOCHIMICA ET BIOPHYSICA ACTA 2013; 1827:1191-9. [PMID: 23685111 DOI: 10.1016/j.bbabio.2013.05.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2013] [Revised: 05/01/2013] [Accepted: 05/09/2013] [Indexed: 10/26/2022]
Abstract
The free energy gap between the metastable charge separated state P(+)QA(-) and the excited bacteriochlorophyll dimer P* was measured by delayed fluorescence of the dimer in mutant reaction center proteins of the photosynthetic bacterium Rhodobacter sphaeroides. The mutations were engineered both at the donor (L131L, M160L, M197F and M202H) and acceptor (M265I and M234E) sides. While the donor side mutations changed systematically the number of H-bonds to P, the acceptor side mutations modified the energetics of QA by altering the van-der-Waals and electronic interactions (M265IT) and H-bond network to the acidic cluster around QB (M234EH, M234EL, M234EA and M234ER). All mutants decreased the free energy gap of the wild type RC (~890meV), i.e. destabilized the P(+)QA(-) charge pair by 60-110meV at pH8. Multiple modifications in the hydrogen bonding pattern to P resulted in systematic changes of the free energy gap. The destabilization showed no pH-dependence (M234 mutants) or slight increase (WT, donor-side mutants and M265IT above pH8) with average slope of 10-15meV/pH unit over the 6-10.5pH range. In wild type and donor-side mutants, the free energy change of the charge separation consisted of mainly enthalpic term but the acceptor side mutants showed increased entropic (even above that of enthalpic) contributions. This could include softening the structure of the iron ligand (M234EH) and the QA binding pocket (M265IT) and/or increase of the multiplicity of the electron transfer of charge separation in the acceptor side upon mutation.
Collapse
Affiliation(s)
- Delphine Onidas
- Laboratoire de Chimie Physique UMR 8000, Batiment 350, Orsay-Cedex, Université de Paris-Sud, 91405, France
| | | | | | | |
Collapse
|
10
|
Punnoose A, McConnell L, Liu W, Mutter AC, Koder R. Fundamental limits on wavelength, efficiency and yield of the charge separation triad. PLoS One 2012; 7:e36065. [PMID: 22675467 PMCID: PMC3365904 DOI: 10.1371/journal.pone.0036065] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2012] [Accepted: 03/30/2012] [Indexed: 12/02/2022] Open
Abstract
In an attempt to optimize a high yield, high efficiency artificial photosynthetic protein we have discovered unique energy and spatial architecture limits which apply to all light-activated photosynthetic systems. We have generated an analytical solution for the time behavior of the core three cofactor charge separation element in photosynthesis, the photosynthetic cofactor triad, and explored the functional consequences of its makeup including its architecture, the reduction potentials of its components, and the absorption energy of the light absorbing primary-donor cofactor. Our primary findings are two: First, that a high efficiency, high yield triad will have an absorption frequency more than twice the reorganization energy of the first electron transfer, and second, that the relative distance of the acceptor and the donor from the primary-donor plays an important role in determining the yields, with the highest efficiency, highest yield architecture having the light absorbing cofactor closest to the acceptor. Surprisingly, despite the increased complexity found in natural solar energy conversion proteins, we find that the construction of this central triad in natural systems matches these predictions. Our analysis thus not only suggests explanations for some aspects of the makeup of natural photosynthetic systems, it also provides specific design criteria necessary to create high efficiency, high yield artificial protein-based triads.
Collapse
Affiliation(s)
- Alexander Punnoose
- Instituto de Física Teórica, Universidade Estadual Paulista, São Paulo, Brazil
- Department of Physics, City College of the City University of New York, New York, New York, United States of America
- * E-mail: (AP); (RK)
| | - Liza McConnell
- Department of Physics, City College of the City University of New York, New York, New York, United States of America
| | - Wei Liu
- Department of Physics, City College of the City University of New York, New York, New York, United States of America
| | - Andrew C. Mutter
- Department of Physics, City College of the City University of New York, New York, New York, United States of America
| | - Ronald Koder
- Department of Physics, City College of the City University of New York, New York, New York, United States of America
- * E-mail: (AP); (RK)
| |
Collapse
|
11
|
Listening to PS II: Enthalpy, entropy, and volume changes. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2011; 104:357-65. [DOI: 10.1016/j.jphotobiol.2011.03.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2010] [Revised: 03/05/2011] [Accepted: 03/08/2011] [Indexed: 11/17/2022]
|
12
|
Zheng Z, Dutton PL, Gunner MR. The measured and calculated affinity of methyl- and methoxy-substituted benzoquinones for the Q(A) site of bacterial reaction centers. Proteins 2010; 78:2638-54. [PMID: 20607696 DOI: 10.1002/prot.22779] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Quinones play important roles in mitochondrial and photosynthetic energy conversion acting as intramembrane, mobile electron, and proton carriers between catalytic sites in various electron transfer proteins. They display different affinity, selectivity, functionality, and exchange dynamics in different binding sites. The computational analysis of quinone binding sheds light on the requirements for quinone affinity and specificity. The affinities of 10 oxidized, neutral benzoquinones were measured for the high affinity Q(A) site in the detergent-solubilized Rhodobacter sphaeroides bacterial photosynthetic reaction center. Multiconformation Continuum Electrostatics was then used to calculate their relative binding free energies by grand canonical Monte Carlo sampling with a rigid protein backbone, flexible ligand, and side chain positions and protonation states. Van der Waals and torsion energies, Poisson-Boltzmann continuum electrostatics, and accessible surface area-dependent ligand-solvent interactions are considered. An initial, single cycle of GROMACS backbone optimization improves the match with experiment as do coupled-ligand and side-chain motions. The calculations match experiment with an root mean square deviation (RMSD) of 2.29 and a slope of 1.28. The affinities are dominated by favorable protein-ligand van der Waals rather than electrostatic interactions. Each quinone appears in a closely clustered set of positions. Methyl and methoxy groups move into the same positions as found for the native quinone. Difficulties putting methyls into methoxy sites are observed. Calculations using a solvent-accessible surface area-dependent implicit van der Waals interaction smoothed out small clashes, providing a better match to experiment with a RMSD of 0.77 and a slope of 0.97.
Collapse
Affiliation(s)
- Zhong Zheng
- Department of Physics, City College of New York, New York, New York 10031, USA
| | | | | |
Collapse
|
13
|
Zhang J, Gunner MR. Multiconformation continuum electrostatics analysis of the effects of a buried Asp introduced near heme a in Rhodobacter sphaeroides cytochrome c oxidase. Biochemistry 2010; 49:8043-52. [PMID: 20701325 DOI: 10.1021/bi100663u] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Cytochrome c oxidase (CcO) reduces O(2) to water via a series of proton-coupled electron transfers, generating a transmembrane electrochemical gradient. Coupling electron and proton transfer requires changing the pK(a) values of buried residues at each stage in the reaction cycle. Heme a is a key cofactor in the CcO electron transfer chain. Mutation of Ser44 to Asp has been reported [Mills, D. A., et al. (2008) Biochemistry 47, 11499-11509], changing the hydrogen bond acceptor from His102, the heme a axial ligand in Rhodobactor sphaeroides CcO. This adds an acidic residue to the CcO interior. The electrochemical behavior of heme a in wild-type and S44D CcO is compared using the continuum electrostatics program MCCE. The introduced, deeply buried Asp remains ionized at physiological pH only when the nearby heme is oxidized. Heme a reduction is now calculated to be strongly coupled to Asp proton binding, while with Ser44, it is weakly coupled to small protonation shifts at multiple sites, increasing the pH dependence in the mutant. At pH 7, the partially ionized Asp 44 is calculated to lower the heme redox potential by 50 mV as expected given the thermodynamics of coupled electron and proton transfers. This highlights an curious finding in the experimental results where a low Asp pK(a) is found together with a stabilized reduced heme. The stabilization of a heme oxidation in a model complex by a hydrogen bond to the axial His ligand calculated with continuum electrostatics and with density functional theory were in good agreement.
Collapse
Affiliation(s)
- Jun Zhang
- Physics Department, J-419, City College of New York, 160 Convent Avenue, New York, New York 10031, USA
| | | |
Collapse
|
14
|
Methodology of pulsed photoacoustics and its application to probe photosystems and receptors. SENSORS 2010; 10:5642-67. [PMID: 22219680 PMCID: PMC3247725 DOI: 10.3390/s100605642] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2010] [Revised: 05/27/2010] [Accepted: 05/27/2010] [Indexed: 11/16/2022]
Abstract
We review recent advances in the methodology of pulsed time-resolved photoacoustics and its application to studies of photosynthetic reaction centers and membrane receptors such as the G protein-coupled receptor rhodopsin. The experimental parameters accessible to photoacoustics include molecular volume change and photoreaction enthalpy change. Light-driven volume change secondary to protein conformational changes or electrostriction is directly related to the photoreaction and thus can be a useful measurement of activity and function. The enthalpy changes of the photochemical reactions observed can be measured directly by photoacoustics. With the measurement of enthalpy change, the reaction entropy can also be calculated when free energy is known. Dissecting the free energy of a photoreaction into enthalpic and entropic components may provide critical information about photoactivation mechanisms of photosystems and photoreceptors. The potential limitations and future applications of time-resolved photoacoustics are also discussed.
Collapse
|
15
|
Guo Y, Tan J, Wirth B. Observation of plastoquinone kinetics in photosystem II from delayed fluorescence measurements. IET Syst Biol 2010; 4:90-8. [DOI: 10.1049/iet-syb.2008.0157] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
|
16
|
Abstract
We report the results of extensive numerical simulations and theoretical calculations of electronic transitions in the reaction center of Rhodobacter sphaeroides photosynthetic bacterium. The energetics and kinetics of five electronic transitions related to the kinetic scheme of primary charge separation have been analyzed and compared to experimental observations. Nonergodic formulation of the reaction kinetics is required for the calculation of the rates due to a severe breakdown of the system ergodicity on the time scale of primary charge separation, with the consequent inapplicability of the standard canonical prescription to calculate the activation barrier. Common to all reactions studied is a significant excess of the charge-transfer reorganization energy from the width of the energy gap fluctuations over that from the Stokes shift of the transition. This property of the hydrated proteins, breaking the linear response of the thermal bath, allows the reaction center to significantly reduce the reaction free energy of near-activationless electron hops and thus raise the overall energetic efficiency of the biological charge-transfer chain. The increase of the rate of primary charge separation with cooling is explained in terms of the temperature variation of induction solvation, which dominates the average donor-acceptor energy gap for all electronic transitions in the reaction center. It is also suggested that the experimentally observed break in the Arrhenius slope of the primary recombination rate, occurring near the temperature of the dynamical transition in proteins, can be traced back to a significant drop of the solvent reorganization energy close to that temperature.
Collapse
Affiliation(s)
- David N Lebard
- Center for Biological Physics, Arizona State University, P.O. Box 871604, Tempe, Arizona 85287-1604, USA
| | | |
Collapse
|
17
|
Francia F, Malferrari M, Sacquin-Mora S, Venturoli G. Charge Recombination Kinetics and Protein Dynamics in Wild Type and Carotenoid-less Bacterial Reaction Centers: Studies in Trehalose Glasses. J Phys Chem B 2009; 113:10389-98. [DOI: 10.1021/jp902287y] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Francesco Francia
- Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Laboratoire de Biochimie Théorique, CNRS UPR 9080, Institut de Biologie Physico-Chimique, 75005 Paris, France, and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia (CNISM), Bologna, Italy
| | - Marco Malferrari
- Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Laboratoire de Biochimie Théorique, CNRS UPR 9080, Institut de Biologie Physico-Chimique, 75005 Paris, France, and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia (CNISM), Bologna, Italy
| | - Sophie Sacquin-Mora
- Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Laboratoire de Biochimie Théorique, CNRS UPR 9080, Institut de Biologie Physico-Chimique, 75005 Paris, France, and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia (CNISM), Bologna, Italy
| | - Giovanni Venturoli
- Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Laboratoire de Biochimie Théorique, CNRS UPR 9080, Institut de Biologie Physico-Chimique, 75005 Paris, France, and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia (CNISM), Bologna, Italy
| |
Collapse
|
18
|
Hou HJM, Shen G, Boichenko VA, Golbeck JH, Mauzerall D. Thermodynamics of Charge Separation of Photosystem I in the menA and menB Null Mutants of Synechocystis sp. PCC 6803 Determined by Pulsed Photoacoustics. Biochemistry 2009; 48:1829-37. [DOI: 10.1021/bi801951t] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Harvey J. M. Hou
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, Massachusetts 02747, Department of Biochemistry and Molecular Biology and Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino 142290, Russia, and The Rockefeller University, 1230 York Avenue, New York, New York 10065
| | - Gaozhong Shen
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, Massachusetts 02747, Department of Biochemistry and Molecular Biology and Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino 142290, Russia, and The Rockefeller University, 1230 York Avenue, New York, New York 10065
| | - Vladimir A. Boichenko
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, Massachusetts 02747, Department of Biochemistry and Molecular Biology and Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino 142290, Russia, and The Rockefeller University, 1230 York Avenue, New York, New York 10065
| | - John H. Golbeck
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, Massachusetts 02747, Department of Biochemistry and Molecular Biology and Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino 142290, Russia, and The Rockefeller University, 1230 York Avenue, New York, New York 10065
| | - David Mauzerall
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, Massachusetts 02747, Department of Biochemistry and Molecular Biology and Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino 142290, Russia, and The Rockefeller University, 1230 York Avenue, New York, New York 10065
| |
Collapse
|
19
|
Jones MR. Structural Plasticity of Reaction Centers from Purple Bacteria. THE PURPLE PHOTOTROPHIC BACTERIA 2009. [DOI: 10.1007/978-1-4020-8815-5_16] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
|
20
|
Wraight CA, Gunner MR. The Acceptor Quinones of Purple Photosynthetic Bacteria — Structure and Spectroscopy. THE PURPLE PHOTOTROPHIC BACTERIA 2009. [DOI: 10.1007/978-1-4020-8815-5_20] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
21
|
Gunner MR, Madeo J, Zhu Z. Modification of quinone electrochemistry by the proteins in the biological electron transfer chains: examples from photosynthetic reaction centers. J Bioenerg Biomembr 2008; 40:509-19. [PMID: 18979192 DOI: 10.1007/s10863-008-9179-1] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2008] [Accepted: 08/31/2008] [Indexed: 11/29/2022]
Abstract
Quinones such as ubiquinone are the lipid soluble electron and proton carriers in the membranes of mitochondria, chloroplasts and oxygenic bacteria. Quinones undergo controlled redox reactions bound to specific sites in integral membrane proteins such as the cytochrome bc(1) oxidoreductase. The quinone reactions in bacterial photosynthesis are amongst the best characterized, presenting a model to understand how proteins modulate cofactor chemistry. The free energy of ubiquinone redox reactions in aqueous solution and in the Q(A) and Q(B) sites of the bacterial photosynthetic reaction centers (RCs) are compared. In the primary Q(A) site ubiquinone is reduced only to the anionic semiquinone (Q(*-)) while in the secondary Q(B) site the product is the doubly reduced, doubly protonated quinol (QH(2)). The ways in which the protein modifies the relative energy of each reduced and protonated intermediate are described. For example, the protein stabilizes Q(*-) while destabilizing Q(=) relative to aqueous solution through electrostatic interactions. In addition, kinetic and thermodynamic mechanisms for stabilizing the intermediate semiquinones are compared. Evidence for the protein sequestering anionic compounds by slowing both on and off rates as well as by binding the anion more tightly is reviewed.
Collapse
Affiliation(s)
- M R Gunner
- Physics Department, The City College of New York, New York, NY 10031, USA.
| | | | | |
Collapse
|
22
|
Nagy L, Kiss V, Brumfeld V, Malkin S. Thermal and Structural Changes of Photosynthetic Reaction Centers Characterized by Photoacoustic Detection with a Broad Frequency Band Hydrophone¶. Photochem Photobiol 2007. [DOI: 10.1562/0031-8655(2001)0740081tascop2.0.co2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
23
|
Gunner MR, Mao J, Song Y, Kim J. Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2006; 1757:942-68. [PMID: 16905113 PMCID: PMC2760439 DOI: 10.1016/j.bbabio.2006.06.005] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2006] [Revised: 06/07/2006] [Accepted: 06/13/2006] [Indexed: 11/15/2022]
Abstract
A protein structure should provide the information needed to understand its observed properties. Significant progress has been made in developing accurate calculations of acid/base and oxidation/reduction reactions in proteins. Current methods and their strengths and weaknesses are discussed. The distribution and calculated ionization states in a survey of proteins is described, showing that a significant minority of acidic and basic residues are buried in the protein and that most of these remain ionized. The electrochemistry of heme and quinones are considered. Proton transfers in bacteriorhodopsin and coupled electron and proton transfers in photosynthetic reaction centers, 5-coordinate heme binding proteins and cytochrome c oxidase are highlighted as systems where calculations have provided insight into the reaction mechanism.
Collapse
Affiliation(s)
- M R Gunner
- Physics Department City College of New York, New York, NY 10031, USA.
| | | | | | | |
Collapse
|
24
|
Ghorai PK, Matyushov DV. Dynamical Arrest of Electron Transfer Reorganization in Super-Cooled Water. J Am Chem Soc 2005; 127:16390-1. [PMID: 16305214 DOI: 10.1021/ja0535920] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This paper reports the results of Molecular Dynamics (MD) simulations of the solvent reorganization energy of electron transfer (ET) reactions in low-temperature solvents. Simulations are carried out for a model charge-transfer optical dye (p-nitroaniline) in SPC/E water in a range of temperatures down to the point of solvent ideal glass transition. We show a significant departure of the solvent reorganization energy, measured on a given time window, from its thermodynamic limit obtained by averaging over long simulation trajectories. Our results thus indicate that optical solvatochromism and activation parameters of ET reactions measured in viscous solvents will be significantly affected by the dynamical arrest of nuclear solvation when the experimental time scale becomes comparable to the characteristic relaxation time of the solvent.
Collapse
Affiliation(s)
- Pradip K Ghorai
- Department of Chemistry and Biochemistry and the Center for the Study of Early Events in Photosynthesis, Arizona State University, PO Box 871604, Tempe, Arizona 85287-1604, USA
| | | |
Collapse
|
25
|
Pushkar YN, Karyagina I, Stehlik D, Brown S, van der Est A. Recruitment of a Foreign Quinone into the A1 Site of Photosystem I. J Biol Chem 2005; 280:12382-90. [PMID: 15640524 DOI: 10.1074/jbc.m412940200] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
In photosystem I (PS I), phylloquinone (PhQ) acts as a low potential electron acceptor during light-induced electron transfer (ET). The origin of the very low midpoint potential of the quinone is investigated by introducing anthraquinone (AQ) into PS I in the presence and absence of the iron-sulfur clusters. Solvent extraction and reincubation is used to obtain PS I particles containing AQ and the iron-sulfur clusters, whereas incubation of the menB rubA double mutant yields PS I with AQ in the PhQ site but no iron-sulfur clusters. Transient electron paramagnetic resonance spectroscopy is used to investigate the orientation of AQ in the binding site and the ET kinetics. The low temperature spectra suggest that the orientation of AQ in all samples is the same as that of PhQ in native PS I. In PS I containing the iron sulfur clusters, (i) the rate of forward electron transfer from the AQ*- to F(X) is found to be faster than from PhQ*- to F(X), and (ii) the spin polarization patterns provide indirect evidence that the preceding ET step from A0*- to quinone is slower than in the native system. The changes in the kinetics are in accordance with the more negative reduction midpoint potential of AQ. Moreover, a comparison of the spectra in the presence and absence of the iron-sulfur clusters suggests that the midpoint potential of AQ is more negative in the presence of F(X). The electron transfer from the AQ- to F(X) is found to be thermally activated with a lower apparent activation energy than for PhQ in native PS I. The spin polarization patterns show that the triplet character in the initial state of P700)*+AQ*- increases with temperature. This behavior is rationalized in terms of a model involving a distribution of lifetimes/redox potentials for A0 and related competition between charge recombination and forward electron transfer from the radical pair P700*+A0*-.
Collapse
Affiliation(s)
- Yulia N Pushkar
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany
| | | | | | | | | |
Collapse
|
26
|
Kriegl JM, Forster FK, Nienhaus GU. Charge recombination and protein dynamics in bacterial photosynthetic reaction centers entrapped in a sol-gel matrix. Biophys J 2003; 85:1851-70. [PMID: 12944298 PMCID: PMC1303357 DOI: 10.1016/s0006-3495(03)74613-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Many proteins can be immobilized in silica hydrogel matrices without compromising their function, making this a suitable technique for biosensor applications. Immobilization will in general affect protein structure and dynamics. To study these effects, we have measured the P(+)Q(A)(-) charge recombination kinetics after laser excitation of Q(B)-depleted wild-type photosynthetic reaction centers from Rhodobacter sphaeroides in a tetramethoxysilane (TMOS) sol-gel matrix and, for comparison, also in cryosolvent. The nonexponential electron transfer kinetics observed between 10 and 300 K were analyzed quantitatively using the spin boson model for the intrinsic temperature dependence of the electron transfer and an adiabatic change of the energy gap and electronic coupling caused by protein motions in response to the altered charge distributions. The analysis reveals similarities and differences in the TMOS-matrix and bulk-solvent samples. In both preparations, electron transfer is coupled to the same spectrum of low frequency phonons. As in bulk solvent, charge-solvating protein motions are present in the TMOS matrix. Large-scale conformational changes are arrested in the hydrogel, as evident from the nonexponential kinetics even at room temperature. The altered dynamics is likely responsible for the observed changes in the electronic coupling matrix element.
Collapse
Affiliation(s)
- Jan M Kriegl
- Department of Biophysics, University of Ulm, Ulm, Germany
| | | | | |
Collapse
|
27
|
Di Donato M, Correa A, Peluso A. The role of the iron–histidine bridge in the early steps of photosynthesis. Chem Phys Lett 2003. [DOI: 10.1016/s0009-2614(02)01892-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
28
|
Palazzo G, Mallardi A, Hochkoeppler A, Cordone L, Venturoli G. Electron transfer kinetics in photosynthetic reaction centers embedded in trehalose glasses: trapping of conformational substates at room temperature. Biophys J 2002; 82:558-68. [PMID: 11806901 PMCID: PMC1301868 DOI: 10.1016/s0006-3495(02)75421-0] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We report on room temperature electron transfer in the reaction center (RC) complex purified from Rhodobacter sphaeroides. The protein was embedded in trehalose-water systems of different trehalose/water ratios. This enabled us to get new insights on the relationship between RC conformational dynamics and long-range electron transfer. In particular, we measured the kinetics of electron transfer from the primary reduced quinone acceptor (Q(A)(-)) to the primary photo oxidized donor (P(+)), by time-resolved absorption spectroscopy, as a function of the matrix composition. The composition was evaluated either by weighing (liquid samples) or by near infrared spectroscopy (highly viscous or solid glasses). Deconvolution of the observed, nonexponential kinetics required a continuous spectrum of rate constants. The average rate constant (<k> = 8.7 s(-1) in a 28% (w/w) trehalose solution) increases smoothly by increasing the trehalose/water ratio. In solid glasses, at trehalose/water ratios > or = 97%, an abrupt <k> increase is observed (<k> = 26.6 s(-1) in the driest solid sample). A dramatic broadening of the rate distribution function parallels the above sudden <k> increase. Both effects fully revert upon rehydration of the glass. We compared the kinetics observed at room temperature in extensively dried water-trehalose matrices with the ones measured in glycerol-water mixtures at cryogenic temperatures and conclude that, in solid trehalose-water glasses, the thermal fluctuations among conformational substates are inhibited. This was inferred from the large broadening of the rate constant distribution for electron transfer obtained in solid glasses, which was due to the free energy distribution barriers having become quasi static. Accordingly, the RC relaxation from dark-adapted to light-adapted conformation, which follows primary charge separation at room temperature, is progressively hindered over the time scale of P(+)Q(A)(-) charge recombination, upon decreasing the water content. In solid trehalose-water glasses the electron transfer process resulted much more affected than in RC dried in the absence of sugar. This indicated a larger hindering of the internal dynamics in trehalose-coated RC, notwithstanding the larger amount of residual water present in comparison with samples dried in the absence of sugar.
Collapse
Affiliation(s)
- Gerardo Palazzo
- Dipartimento di Chimica, Università di Bari, 70126 Bari, Italy
| | | | | | | | | |
Collapse
|
29
|
Hucke O, Schmid R, Labahn A. Exploring the primary electron acceptor (QA)-site of the bacterial reaction center from Rhodobacter sphaeroides. Binding mode of vitamin K derivatives. EUROPEAN JOURNAL OF BIOCHEMISTRY 2002; 269:1096-108. [PMID: 11856340 DOI: 10.1046/j.0014-2956.2001.02699.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The functional replacement of the primary ubiquinone (QA) in the photosynthetic reaction center (RC) from Rhodobacter sphaeroides with synthetic vitamin K derivatives has provided a powerful tool to investigate the electron transfer mechanism. To investigate the binding mode of these quinones to the QA binding site we have determined the binding free energy and charge recombination rate from QA(-) to D+ (kAD) of 29 different 1,4-naphthoquinone derivatives with systematically altered structures. The most striking result was that none of the eight tested compounds carrying methyl groups in both positions 5 and 8 of the aromatic ring exhibited functional binding. To understand the binding properties of these quinones on a molecular level, the structures of the reaction center-naphthoquinone complexes were predicted with ligand docking calculations. All protein--ligand structures show hydrogen bonds between the carbonyl oxygens of the quinone and AlaM260 and HisM219 as found for the native ubiquinone-10 in the X-ray structure. The center-to-center distance between the naphthoquinones at QA and the native ubiquinone-10 at QB (the secondary electron acceptor) is essentially the same, compared to the native structure. A detailed analysis of the docking calculations reveals that 5,8-disubstitution prohibits binding due to steric clashes of the 5-methyl group with the backbone atoms of AlaM260 and AlaM249. The experimentally determined binding free energies were reproduced with an rmsd of approximately 4 kJ x mol(-1) in most cases providing a valuable tool for the design of new artificial electron acceptors and inhibitors.
Collapse
Affiliation(s)
- Oliver Hucke
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Germany
| | | | | |
Collapse
|
30
|
Nagy L, Kiss V, Brumfeld V, Malkin S. Thermal and structural changes of photosynthetic reaction centers characterized by photoacoustic detection with a broad frequency band hydrophone. Photochem Photobiol 2001; 74:81-7. [PMID: 11460542 DOI: 10.1562/0031-8655(2001)074<0081:tascop>2.0.co;2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Photoacoustic measurements using a broad frequency band hydrophone were carried out in photosynthetic reaction centers (RC) isolated from Rhodobacter sphaeroides R-26 purple bacteria. Data were extracted on enthalpy and volume changes accompanying the primary steps after excitation in the range of 0-500 microseconds aimed at further characterizing the thermodynamic properties of the RC. Quinone titration showed that the volume contraction accompanying the electron transport is sensitive to the molecular species occupying the secondary quinone site. delta VM = 14.4, 7.7 and 4.3 cm3 molar volume contractions were calculated from the measured parameters for 1, 2 and 0.07 quinone/RC after light excitation. Comparing the enthalpy changes (delta H) to the Gibbs free energy data in the literature, a rather large (26%) entropic contribution to the free energy changes (delta G) is estimated for the P*QAQB-->P+QA-QB electron transport (where QA and QB represent primary and secondary quinones, respectively). This is in contrast to previous estimations that delta G = delta H in these processes. On the other hand, only a small (4%) entropic contribution to the delta G of the P*QAQB-->P+QAQB- process is estimated, in agreement with the literature data. Our results are in good agreement with the data obtained earlier (Edens et al. [2000] J. Am. Chem. Soc. 122, 1479-1485).
Collapse
Affiliation(s)
- L Nagy
- Department of Biophysics, Szeged University, Szeged Egyetem u. 2. H-6722, Hungary.
| | | | | | | |
Collapse
|