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Investigating radical pair reaction dynamics of B 12 coenzymes 2: Time-resolved electron paramagnetic resonance spectroscopy. Methods Enzymol 2022; 669:283-301. [PMID: 35644175 DOI: 10.1016/bs.mie.2021.12.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The chemistry of B12 coenzymes is highly sensitive to the nature of their upper axial ligand and can be further tuned by their environment. Methylcobalamin, for example, generates RPs photochemically but undergoes non-radical biochemistry when bound to its dependent enzymes. Owing to the transient nature of the reaction intermediates, it remains a challenge to investigate how their environment controls reactivity. Here, we describe how to use time-resolved electron paramagnetic spectroscopy to directly monitor the generation and evolution of transient radicals that result from the photolysis of a B12 coenzyme. This method produces evolving, spin-polarized spectra that are rich in mechanistic detail.
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Lukinović V, Woodward JR, Marrafa TC, Shanmugam M, Heyes DJ, Hardman SJO, Scrutton NS, Hay S, Fielding AJ, Jones AR. Photochemical Spin Dynamics of the Vitamin B 12 Derivative, Methylcobalamin. J Phys Chem B 2019; 123:4663-4672. [PMID: 31081330 DOI: 10.1021/acs.jpcb.9b01969] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Derivatives of vitamin B12 are six-coordinate cobalt corrinoids found in humans, other animals, and microorganisms. By acting as enzymatic cofactors and photoreceptor chromophores, they serve vital metabolic and photoprotective functions. Depending on the context, the chemical mechanisms of the biologically active derivatives of B12-methylcobalamin (MeCbl) and 5'-deoxyadenosylcobalamin (AdoCbl)-can be very different from one another. The extent to which this chemistry is tuned by the upper axial ligand, however, is not yet clear. Here, we have used a combination of time-resolved Fourier transform-electron paramagnetic resonance (FT-EPR), magnetic field effect experiments, and spin dynamic simulations to reveal that the upper axial ligand alone only results in relatively minor changes to the photochemical spin dynamics of B12. By studying the photolysis of MeCbl, we find that, similar to AdoCbl, the initial (or "geminate") radical pairs (RPs) are born predominantly in the singlet spin state and thus originate from singlet excited-state precursors. This is in contrast to the triplet RPs and precursors proposed previously. Unlike AdoCbl, the extent of geminate recombination is limited following MeCbl photolysis, resulting in significant distortions to the FT-EPR signal caused by polarization from spin-correlated methyl-methyl radical "f-pairs" formed following rapid diffusion. Despite the photophysical mechanism that precedes photolysis of MeCbl showing wavelength dependence, the subsequent spin dynamics appear to be largely independent of excitation wavelength, again similar to AdoCbl. Our data finally provide clarity to what in the literature to date has been a confused and contradictory picture. We conclude that, although the upper axial position of MeCbl and AdoCbl does impact their reactivity to some extent, the remarkable biochemical diversity of these fascinating molecules is most likely a result of tuning by their protein environment.
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Affiliation(s)
- Valentina Lukinović
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
| | - Jonathan R Woodward
- Graduate School of Arts and Sciences , The University of Tokyo , 3-8-1 Komaba , Meguro-ku, Tokyo 153-8902 , Japan
| | - Teresa C Marrafa
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
| | - Muralidharan Shanmugam
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
| | - Derren J Heyes
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
| | - Samantha J O Hardman
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
| | - Nigel S Scrutton
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
| | - Sam Hay
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
| | | | - Alex R Jones
- Manchester Institute of Biotechnology , The University of Manchester , 131 Princess Street , Manchester M1 7DN , U.K
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Grupp A, Bubrin M, Ehret F, Zeng Q, Hartl F, Kvapilová H, Záliš S, Kaim W. RuII(α-diimine) or RuIII(α-diimine·-)? Structural, Spectroscopic, and Theoretical Evidence for the Stabilization of a Prominent Metal-to-Ligand Charge-Transfer Excited-State Configuration in the Ground State. Eur J Inorg Chem 2013. [DOI: 10.1002/ejic.201301206] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Lebedeva NV, Schmidt RD, Concepcion JJ, Brennaman MK, Stanton IN, Therien MJ, Meyer TJ, Forbes MDE. Structural and pH Dependence of Excited State PCET Reactions Involving Reductive Quenching of the MLCT Excited State of [RuII(bpy)2(bpz)]2+ by Hydroquinones. J Phys Chem A 2011; 115:3346-56. [DOI: 10.1021/jp200381n] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Natalia V. Lebedeva
- Department of Chemistry Caudill Laboratories University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
| | - Robert D. Schmidt
- Department of Chemistry Caudill Laboratories University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
| | - Javier J. Concepcion
- Department of Chemistry Caudill Laboratories University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
| | - M. Kyle Brennaman
- Department of Chemistry Caudill Laboratories University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
| | - Ian N. Stanton
- Department of Chemistry French Family Science Center Duke University, Durham, North Carolina 27708, United States
| | - Michael J. Therien
- Department of Chemistry French Family Science Center Duke University, Durham, North Carolina 27708, United States
| | - Thomas J. Meyer
- Department of Chemistry Caudill Laboratories University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
| | - Malcolm D. E. Forbes
- Department of Chemistry Caudill Laboratories University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
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Cauët E, Bogatko S, Mugeniwabagara E, Fusaro L, Kirsch-De Mesmaeker A, Luhmer M, Vaeck N. Density Functional Theory Interpretation of the 1H Photo-Chemically Induced Dynamic Nuclear Polarization Enhancements Characterizing Photoreduced Polyazaaromatic Ru(II) Coordination Complexes. Inorg Chem 2010; 49:7826-31. [DOI: 10.1021/ic100636j] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Emilie Cauët
- Service de Chimie Quantique et Photophysique, CP 160/09
| | | | | | - Luca Fusaro
- Laboratoire de Résonance Magnétique Nucléaire Haute Résolution, CP 160/08
| | | | - Michel Luhmer
- Laboratoire de Résonance Magnétique Nucléaire Haute Résolution, CP 160/08
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Perrier S, Mugeniwabagara E, Kirsch-De Mesmaeker A, Hore PJ, Luhmer M. Exploring photoreactions between polyazaaromatic Ru(II) complexes and biomolecules by chemically induced dynamic nuclear polarization measurements. J Am Chem Soc 2009; 131:12458-65. [PMID: 19658383 DOI: 10.1021/ja9024287] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Steady-state (1)H photo-chemically induced dynamic nuclear polarization (CIDNP) experiments were conducted at 14.1 T on deoxygenated (buffered pH 7) aqueous solutions of [Ru(phen)(3)](2+), [Ru(tap)(2)(phen)](2+), and [Ru(tap)(3)](2+) (tap = 1,4,5,8-tetraazaphenanthrene; phen = 1,10-phenanthroline) in the presence of guanosine-5'-monophosphate or N-acetyltyrosine. For the first time, CIDNP arising from photo-oxidation by polyazaaromatic Ru(II) complexes is reported. In agreement with the occurrence of a photo-electron-transfer process, photo-CIDNP effects are observed with [Ru(tap)(3)](2+) and [Ru(tap)(2)(phen)](2+) but not with [Ru(phen)(3)](2+). With [Ru(tap)(2)(phen)](2+), no significant photo-CIDNP is observed for the (1)H nuclei of the phen ligand, consistent with the fact that the metal-to-ligand charge-transfer triplet excited states responsible for the photo-oxidation involve a tap ligand. Successive experiments with [Ru(tap)(3)](2+) highlight the accumulation of long-lived radical species in solution that cause (1)H NMR signal broadening and photo-CIDNP extinction. The (1)H photo-CIDNP observed for the biomolecules is rather weak, less than about 30% of the equilibrium magnetization. However, up to 60% polarization enhancement is observed for H-2 and H-7 of the tap ligands, which indicates high unpaired electron density in the vicinity of these atoms in the transient radical pair. This is consistent with the structure of known photoadducts formed, for instance, between the metallic compounds and the guanine base of mono- and polynucleotides. Indeed, in these adducts the covalent bond involves carbon C-2 or C-7 of a tap ligand. The occurrence of photo-CIDNP with polyazaaromatic Ru(II) complexes opens new perspectives for the study of this type of compound.
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Affiliation(s)
- Sandrine Perrier
- Laboratoire de Résonance Magnétique Nucléaire Haute Résolution, Université Libre de Bruxelles, 50 Av. F.D. Roosevelt, B-1050 Bruxelles, Belgium
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Wiberg KB, Wang YG, Wilson SM, Vaccaro PH, Cheeseman JR. Sum-over-States Calculation of the Specific Rotations of Some Substituted Oxiranes, Chloropropionitrile, Ethane, and Norbornenone. J Phys Chem A 2006; 110:13995-4002. [PMID: 17181361 DOI: 10.1021/jp0655221] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A sum-over-states approach has been applied to the calculation of the specific rotations of several substituted oxiranes, 2-chloropropionitrile, and 30 degrees-rotated ethane. In each case, the first few excited states proved to have only a relatively small effect on the calculated specific rotation. It was necessary to use a very large number of excited states in order to achieve convergence with the results of the more direct linear response method. However, the latter does not give information on which excited states are important in determining the specific rotation. Norbornenone is unique in that its greatly enhanced specific rotation as compared to norbornanone is associated with the low-energy n-pi* transition. The C=C bond orbitals interact with the C=O in the LUMO, and a density difference plot for going from the ground state to the first excited state clearly shows the perturbation of the C=C.
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Affiliation(s)
- Kenneth B Wiberg
- Department of Chemistry, Yale University, New Haven, CT 06520-8197, USA.
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Gabrielsson A, Blanco-Rodríguez AM, Matousek P, Towrie M, Vlček A. Different Mechanisms of Photochemical Re−Me and Re−Et Bond Homolysis in [Re(R)(CO)3(4,4‘-dimethyl-2,2‘-bipyridine)]. A Time-Resolved IR Spectroscopic Study Ranging from Picoseconds to Microseconds. Organometallics 2006. [DOI: 10.1021/om0508886] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Anders Gabrielsson
- School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, United Kingdom, and Central Laser Facility, CCLRC Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - Ana María Blanco-Rodríguez
- School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, United Kingdom, and Central Laser Facility, CCLRC Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - Pavel Matousek
- School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, United Kingdom, and Central Laser Facility, CCLRC Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - Mike Towrie
- School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, United Kingdom, and Central Laser Facility, CCLRC Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - Antonín Vlček
- School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, United Kingdom, and Central Laser Facility, CCLRC Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, United Kingdom
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Wiberg KB, Wang YG, Wilson SM, Vaccaro PH, Cheeseman JR. Chiroptical Properties of 2-Chloropropionitrile. J Phys Chem A 2005; 109:3448-53. [PMID: 16833682 DOI: 10.1021/jp0407371] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
(S)-(-)-2-chloropropionitrile has been prepared from (S)-(+)-alanine, and the ORD curves have been obtained in several solvents and in the gas phase. A reaction field extrapolation of the solution data to the gas phase led to an estimated value of [alpha]D = -21 degrees, whereas the interpolated gas phase value is -8 degrees. The specific rotation was found to be temperature dependent in ethylcyclohexane solution over the range 0-100 degrees C. Although rotation of the methyl group leads to large calculated effects on the specific rotation, it does not lead to the temperature dependence. Rather, a low frequency mode at 224 cm(-1) was found to be responsible. This is a mixed mode involving methyl torsion and C-C[triple bond]N bending. The specific rotations calculated at the B3LYP/aug-cc-pVDZ level including electric field dependent functions are in very good agreement with the measured gas phase values.
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Affiliation(s)
- Kenneth B Wiberg
- Department of Chemistry, Yale University, New Haven, Connecticut 06520-8107, USA
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Wiberg KB, Wang YG, Murphy MJ, Vaccaro PH. Temperature Dependence of Optical Rotation: α-Pinene, β-Pinene Pinane, Camphene, Camphor and Fenchone. J Phys Chem A 2004. [DOI: 10.1021/jp040085g] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kenneth B. Wiberg
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
| | - Yi-gui Wang
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
| | - Michael J. Murphy
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
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van Slageren J, Klein A, Záliš S. Ligand-to-ligand charge transfer states and photochemical bond homolysis in metalcarbon bonded platinum complexes. Coord Chem Rev 2002. [DOI: 10.1016/s0010-8545(02)00092-9] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Bussandri A, van Willigen H. FT-EPR Study of the Wavelength Dependence of the Photochemistry of Phenols. J Phys Chem A 2002. [DOI: 10.1021/jp013526u] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alejandro Bussandri
- Department of Chemistry, University of Massachusetts at Boston, Boston, Massachusetts 02125
| | - Hans van Willigen
- Department of Chemistry, University of Massachusetts at Boston, Boston, Massachusetts 02125
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Vergeer FW, Kleverlaan CJ, Stufkens DJ. The first steps of the light-induced biradical and zwitterion formation from the clusters [Os3(CO)10(α-diimine)] studied with ultrafast time-resolved absorption spectroscopy. Inorganica Chim Acta 2002. [DOI: 10.1016/s0020-1693(01)00678-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Bussandri AP, Kiarie CW, Van Willigen H. Photoinduced bond homolysis of B12 coenzymes. An FT-EPR study. RESEARCH ON CHEMICAL INTERMEDIATES 2002. [DOI: 10.1163/15685670260469366] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Turki M, Daniel C, Zális S, Vlcek A, van Slageren J, Stufkens DJ. UV-visible absorption spectra of [Ru(E)(E')(CO)(2)(iPr-DAB)] (E = E' = SnPh(3) or Cl; E = SnPh(3) or Cl, E' = CH(3); iPr-DAB = N,N'-Di-isopropyl-1,4-diaza-1,3-butadiene): combination of CASSCF/CASPT2 and TD-DFT calculations. J Am Chem Soc 2001; 123:11431-40. [PMID: 11707120 DOI: 10.1021/ja010782b] [Citation(s) in RCA: 83] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The UV-visible absorption spectra of [Ru(E)(E')(CO)(2)(iPr-DAB)] (E = E' = SnPh(3) or Cl; E = SnPh(3) or Cl, E' = CH(3); iPr-DAB = N,N'-di-isopropyl-1,4-diaza-1,3-butadiene) are investigated using CASSCF/CASPT2 and TD-DFT calculations on model complexes [Ru(E)(E')(CO)(2)(Me-DAB)] (E = E' = SnH(3) or Cl; E = SnH(3) or Cl, E' = CH(3); Me-DAB = N,N'-dimethyl-1,4-diaza-1,3-butadiene). The calculated transition energies and oscillator strengths allow an unambiguous assignment of the spectra of the nonhalide complexes [Ru(SnPh(3))(2)(CO)(2)(iPr-DAB)] and [Ru(SnPh(3))(Me)(CO)(2)(iPr-DAB)]. The agreement between the CASSCF/CASPT2 and TD-DFT approaches is remarkably good in the case of these nonhalide complexes. The lowest-energy part of the spectrum (visible absorption) originates in electronic transitions that correspond to excitations from the axial E-Ru-E' sigma(2) orbital into the low-lying pi(DAB) orbital (sigma-bond-to-ligand charge transfer, SBLCT, transitions), while the absorption between 25 000 and 35 000 cm(-1) is due to metal-to-ligand charge transfer (MLCT) excitations from the 4d(Ru) orbitals to pi(DAB) (MLCT). Above 35 000 cm(-1), the transitions mostly correspond to MLCT and SBLCT excitations into pi(CO) orbitals. Analysis of the occupied sigma orbitals involved in electronic transitions of the nonhalide complexes shows that the Kohn-Sham orbitals are generally more delocalized than their CASSCF/CASPT2 counterparts. The CASSCF/CASPT2 and TD-DFT approaches lead to different descriptions of electronic transitions of the halide complexes [Ru(Cl)(2)(CO)(2)(Me-DAB)] and [Ru(Cl)(Me)(CO)(2)(Me-DAB)]. CASSCF/CASPT2 reproduces well the observed blue-shift of the lowest absorption band on going from the nonhalide to halide complexes. TD-DFT systematically underestimates the transition energies of these complexes, although it reproduces the general spectral features. The CASSCF/CASPT2 and TD-DFT techniques differ significantly in their assessment of the chloride contribution. Thus, CASSCF/CASPT2 assigns the lowest-energy absorption to predominantly Ru --> DAB MLCT transitions, while TD-DFT predicts a mixed XLCT/MLCT character, with the XLCT component being predominant. (XLCT stands for halide (X)-to-ligand-charge transfer.) Analysis of Kohn-Sham orbitals shows a very important 3p(Cl) admixture into the high-lying occupied orbitals, in contrast to the CASSCF/CASSPT2 molecular orbitals which are nearly pure 4d(Ru) with the usual contribution of the back-donation to pi(CO) orbitals. Further dramatic differences were found between characters of the occupied sigma orbitals, as calculated by CASSCF/CASPT2 and DFT. They differ even in their bonding character with respect to the axial E-Ru and Cl-Ru bonds. These differences are attributed to a drawback of the DFT technique with respect to the dynamical correlation effects which become very important in complexes with a polar Ru-Cl bond. Similar differences in the CASSCF/CASPT2 and TD-DFT descriptions of the lowest allowed transition of [Ru(Cl)(2)(CO)(2)(Me-DAB)] and [Ru(Cl)(Me)(CO)(2)(Me-DAB)] were found by comparing the changes of Mulliken population upon excitation. This comparison also reveals that CASSCF/CASPT2 generally predicts smaller electron density redistribution upon excitation than TD-DFT, despite the more localized character of CASSCF/CASPT2 molecular orbitals.
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Affiliation(s)
- M Turki
- Laboratoire de Chimie Quantique UMR 7551 CNRS / Université Louis Pasteur Institut LeBel, 4 Rue Blaise Pascal, F- 67 000 Strasbourg, France
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Hartl F, Groenestein RP, Mahabiersing T. Air-Tight Three-Electrode Design of Coaxial Electrochemical-EPR Cell for Redox Studies at Low Temperatures. ACTA ACUST UNITED AC 2001. [DOI: 10.1135/cccc20010052] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The weak point of the original Allendoerfer electrochemical-EPR cell has been the reference electrode, placed outside the space-limited electrolysis cavity or not used at all in experiments at low temperatures. We present here an elegant solution to this problem, based on a modified air-tight design of an Allendoerfer cell equipped with a silver-wire pseudoreference electrode. The cell performance is demonstrated on one-electron electrochemical oxidation of heterocyclic 3,6-diphenyl-1,2-dithiine and one-electron reduction of 6-methyl-6-phenylfulvene and the pseudo-octahedral complex fac-[Re(benzyl)(CO)3(dmb)] (dmb = 4,4'-dimethyl-2,2'-bipyridine). In the latter case, the EPR spectrum of the radical anion [Re(benzyl)(CO)3(dmb)]•- points to predominant localization of the unpaired electron on the dmb ligand, in agreement with UV-VIS and IR spectroelectrochemical data.
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