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Houston PL, Van Hoozen BL, Qu C, Yu Q, Bowman JM. Teaching vibrational spectra to assign themselves. Faraday Discuss 2018; 212:65-82. [PMID: 30259026 DOI: 10.1039/c8fd00075a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new paradigm for assigning vibrational spectra is described. Instead of proceeding from potential to Hamiltonian to eigenvalues/eigenvectors/intensities to spectrum, the new method goes "backwards" directly from spectrum to eigenvectors. The eigenvectors then "assign" the spectrum, in that they identify the basis states that contribute to each eigenvalue. To start, we demonstrate an algorithm that can obtain useful estimates of the eigenvectors connecting a real, symmetric Hamiltonian to its eigenvalues even if the only available information about the Hamiltonian is its diagonal elements. When this algorithm is augmented with information about transition intensities, it can be used to assign a complex vibrational spectrum using only information about (1) eigenvalues (the peak centers of the spectrum) and (2) a harmonic basis set (taken to be the diagonal elements of the Hamiltonian). Examples will be discussed, including application to the vibrationally complex spectral region of the formic acid dimer.
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Affiliation(s)
- Paul L Houston
- Department of Chemistry and Chemical Biology, Cornell Universtiy, Ithaca, NY 14853, USA. and School of Chemistry and Biochemistry, Georgia Inst. of Technology, Atlanta, GA 30332-0400, USA
| | - Brian L Van Hoozen
- Department of Chemistry, Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - Chen Qu
- Department of Chemistry, Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - Qi Yu
- Department of Chemistry, Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - Joel M Bowman
- Department of Chemistry, Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
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2
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Johnson BA, Sibert EL. Assigning the low lying vibronic states of CH 3O and CD 3O. J Chem Phys 2017; 146:174112. [PMID: 28477600 DOI: 10.1063/1.4981795] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
The assignment of lines in vibrational spectra in strongly mixing systems is considered. Several low lying vibrational states of the ground electronic X∼2E state of the CH3O and CD3O radicals are assigned. Jahn-Teller, spin-orbit, and Fermi couplings mix the normal mode states. The mixing complicates the assignment of the infrared spectra using a zero-order normal mode representation. Alternative zero-order representations, which include specific Jahn-Teller couplings, are explored. These representations allow for definitive assignments. In many instances it is possible to plot the wavefunctions on which the assignments are based. The plots, which are shown in the adiabatic representation, allow one to visualize the effects of various higher order couplings. The plots also enable one to visualize the conical seam and its effect on the wavefunctions. The first and the second order Jahn-Teller couplings in the rocking motion dominate the spectral features in CH3O, while first order and modulated first order couplings dominate the spectral features in CD3O. The methods described here are general and can be applied to other Jahn-Teller systems.
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Affiliation(s)
- Britta A Johnson
- Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Edwin L Sibert
- Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
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3
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Keshavamurthy S. Eigenstates of Thiophosgene Near the Dissociation Threshold: Deviations From Ergodicity. J Phys Chem A 2013; 117:8729-36. [DOI: 10.1021/jp4033386] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Srihari Keshavamurthy
- Department
of Chemistry, Indian Institute of Technology, Kanpur, Uttar Pradesh 208016, India
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4
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Perry DS, Martens J, Amyay B, Herman M. Hierarchies of intramolecular vibration–rotation dynamical processes in acetylene up to 13,000 cm−1. Mol Phys 2012. [DOI: 10.1080/00268976.2012.711493] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- David S. Perry
- a Department of Chemistry , The University of Akron , OH 44325-3601 , USA
| | - Jonathan Martens
- a Department of Chemistry , The University of Akron , OH 44325-3601 , USA
| | - Badr Amyay
- b Laboratoire de Chimie Quantique et Photophysique, CP160/09, Faculté des Sciences , Université Libre de Bruxelles , 50 ave. Roosevelt, B-1050 Belgium
| | - Michel Herman
- b Laboratoire de Chimie Quantique et Photophysique, CP160/09, Faculté des Sciences , Université Libre de Bruxelles , 50 ave. Roosevelt, B-1050 Belgium
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Császár AG, Fábri C, Szidarovszky T, Mátyus E, Furtenbacher T, Czakó G. The fourth age of quantum chemistry: molecules in motion. Phys Chem Chem Phys 2012; 14:1085-106. [DOI: 10.1039/c1cp21830a] [Citation(s) in RCA: 176] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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6
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Mátyus E, Fábri C, Szidarovszky T, Czakó G, Allen WD, Császár AG. Assigning quantum labels to variationally computed rotational-vibrational eigenstates of polyatomic molecules. J Chem Phys 2010; 133:034113. [DOI: 10.1063/1.3451075] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Abstract
A reformulation of a semiclassical theory that presently seems uniquely capable of interpreting generic complex multiresonant vibrational spectra is presented. Once given the spectroscopic Hamiltonian which reveals the set of possible resonant couplings and its eigenstates, the new and old formulations both yield without any further computation level by level dynamical assignments for the spectra. Computing a simple trajectory in phase space reveals the motions that when quantized yield the assigned levels. The reformulation introduces two new projected representations of the wave functions. The first is in action space and the second in angle space. The projected representations often allow the reduced angle space, where nodal searches are made, to be of lower dimension than formally occurred. In addition the action representation is a similarly lower dimension lattice representation whose discreteness and regularity allow higher reduced dimensions to be studied. The lattice representation is used to produce a significantly more complete and detailed assignment of the thiophosgene spectrum than previously published.
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Affiliation(s)
- Christof Jung
- Instituto de Ciencias Fisicas, Universidad Nacional Autonoma de Mexico, Av. Universidad s/n, 62251 Cuernavaca, Mexico
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8
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Tyng V, Kellman ME. Critical points bifurcation analysis of high-ℓ bending dynamics in acetylene. J Chem Phys 2009; 131:244111. [DOI: 10.1063/1.3264686] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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9
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Tyng V, Kellman ME. Spectral Intensity Patterns and Vibrational Phase Space Structure. J Phys Chem A 2009; 113:13246-50. [DOI: 10.1021/jp904038f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Vivian Tyng
- 91 Klamath Hall, Department of Chemistry, University of Oregon, Eugene, Oregon 97403-1253
| | - Michael E. Kellman
- 91 Klamath Hall, Department of Chemistry, University of Oregon, Eugene, Oregon 97403-1253
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10
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Farantos SC, Schinke R, Guo H, Joyeux M. Energy Localization in Molecules, Bifurcation Phenomena, and Their Spectroscopic Signatures: The Global View. Chem Rev 2009; 109:4248-71. [DOI: 10.1021/cr900069m] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Stavros C. Farantos
- Institute of Electronic Structure and Laser, Foundation for Research and Technology—Hellas, and Department of Chemistry, University of Crete, Iraklion 711 10, Crete, Greece, Max-Planck-Institut für Dynamik und Selbstorganisation, D-37073 Göttingen, Germany, Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, and Laboratoire de Spectrométrie Physique, Université Joseph Fourier—Grenoble I, BP 87, F-38402, St. Martin d’Heres Cedex, France
| | - Reinhard Schinke
- Institute of Electronic Structure and Laser, Foundation for Research and Technology—Hellas, and Department of Chemistry, University of Crete, Iraklion 711 10, Crete, Greece, Max-Planck-Institut für Dynamik und Selbstorganisation, D-37073 Göttingen, Germany, Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, and Laboratoire de Spectrométrie Physique, Université Joseph Fourier—Grenoble I, BP 87, F-38402, St. Martin d’Heres Cedex, France
| | - Hua Guo
- Institute of Electronic Structure and Laser, Foundation for Research and Technology—Hellas, and Department of Chemistry, University of Crete, Iraklion 711 10, Crete, Greece, Max-Planck-Institut für Dynamik und Selbstorganisation, D-37073 Göttingen, Germany, Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, and Laboratoire de Spectrométrie Physique, Université Joseph Fourier—Grenoble I, BP 87, F-38402, St. Martin d’Heres Cedex, France
| | - Marc Joyeux
- Institute of Electronic Structure and Laser, Foundation for Research and Technology—Hellas, and Department of Chemistry, University of Crete, Iraklion 711 10, Crete, Greece, Max-Planck-Institut für Dynamik und Selbstorganisation, D-37073 Göttingen, Germany, Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, and Laboratoire de Spectrométrie Physique, Université Joseph Fourier—Grenoble I, BP 87, F-38402, St. Martin d’Heres Cedex, France
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11
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Tyng V, Kellman ME. Catastrophe map and the role of individual resonances in C2H2 bending dynamics. J Chem Phys 2009; 130:144311. [DOI: 10.1063/1.3046547] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
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12
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Manikandan P, Semparithi A, Keshavamurthy S. Decoding the Dynamical Information Embedded in Highly Excited Vibrational Eigenstates: State Space and Phase Space Viewpoints. J Phys Chem A 2009; 113:1717-30. [DOI: 10.1021/jp807231p] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Paranjothy Manikandan
- Department of Chemistry, Indian Institute of Technology, Kanpur, Uttar Pradesh 208016, India
| | - Aravindan Semparithi
- Department of Chemistry, Indian Institute of Technology, Kanpur, Uttar Pradesh 208016, India
| | - Srihari Keshavamurthy
- Department of Chemistry, Indian Institute of Technology, Kanpur, Uttar Pradesh 208016, India
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13
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Diaz A, Jung C. Analytic perturbative classification and assignment of eigenstates of algebraic vibrational Hamiltonians. Mol Phys 2008. [DOI: 10.1080/00268970801961021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Jung C, Taylor HS. Assignment and Extracting Dynamics from Experimentally and Theoretically Obtained Spectroscopic Hamiltonians in the Complex Spectral and Classically Chaotic Regions. J Phys Chem A 2007; 111:3047-68. [PMID: 17388400 DOI: 10.1021/jp066741p] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An analysis of existing algebraic multiresonance spectroscopic Hamiltonians, derived by fitting to experimental data or from classical canonical or quantum Van Vleck perturbation theory, allows without any significant further classical or quantum calculation the assignment of quantum numbers and motions to states observed in spectra that were previously thought to be irregular or just unassignable. In such cases, inspection of the amplitude and phase of eigenfunctions previously calculated in the Hamiltonians derivation process but now transformed to a reduced dimension semiclassical action-angle representation reveals extremely simple albeit unfamiliar topologies that give quantum numbers by simply counting nodes and phase advances. The topology allows these simple wave functions to be sorted into dynamically different excitation ladders or classes of states which are associated with different regions of phase space. The rungs of these ladders or the states in the classes intersperse in energy causing the spectral complexity. No experimental procedure allows such sorting. The success of the work stems from (1) the qualitative insights of nonlinear dynamics, (2) the conversion of the quantum problem in full dimension to a semiclassical one in reduced dimension by use of a canonical transform that takes advantage of the polyad and other constants of the motion, and (3) the judicious choice of the reduced angle variables to reflect rational ratio resonance frequency conditions. This leads to localization of those semiclassical wave functions, which are affected by the particular resonance. In reverse, the localized appearance of the reduced dimension wave function reveals which resonances govern it and makes sorting visually simple. The success of the work also stems from (4) the revealing use of plots of phase advances as well as the usual densities of the eigenstates for sorting and assignment purposes. Even in classically chaotic regions, organizing trajectories, which correspond to averages over regional phase space structures that need not be computed, can easily be drawn as the structure about which eigenfunction localization takes place. The organizing trajectories when transformed back to the full dimensional configuration space reveal the internal molecular motions. The complexity of the usual quantum stationary and propagated wave functions and associated classical trajectories forbids most often such assignments and sorting. This procedure brings the ability to interpret complex vibrational spectra to a degree previously thought possible only for lower excitations. The new methodology replaces and extends the computationally more difficult parts of a procedure used by the authors that was applied successfully to several molecules during the past few years. The new methodology is applied to DCO, CHBrClF, and the bending of acetylene.
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Affiliation(s)
- Christof Jung
- Instituto de Ciencias Fisicas, Universidad Nacional Autonoma de Mexico, Av. Universidad s/n, 62251 Cuernavaca, Mexico
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Rueda J, Jung C. Evaluation of an algebraic model for the vibrations of water, effects of a discrete symmetry. Mol Phys 2006. [DOI: 10.1080/00268970500228110] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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16
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Semparithi A, Keshavamurthy S. Parametric perspective on highly excited states: case studies of CHBrClF and C2H2. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2004.08.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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17
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Arranz FJ, Benito RM, Borondo F. Topology of the distribution of zeros of the Husimi function in the LiNC/LiCN molecular system. J Chem Phys 2004; 120:6516-23. [PMID: 15267542 DOI: 10.1063/1.1665984] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Phase space representations of quantum mechanics constitute useful tools to study vibrations in molecular systems. Among all possibilities, the Husimi function or coherent state representation is very widely used, its maxima indicating which regions of phase space are relevant in the dynamics of the system. The corresponding zeros are also a good indicator to investigate the characteristics of the eigenstates, and it has been shown how the corresponding distributions can discriminate between regular, irregular, and scarred wave functions. In this paper, we discuss how this result can be understood in terms of the overlap between coherent states and system eigenfunctions.
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Affiliation(s)
- F J Arranz
- Departamento de Fisica y Mecanica, E.T.S.I. Agronomos, Universidad Politecnica de Madrid, 28040 Madrid, Spain.
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Jung C, Mejia-Monasterio C, Taylor HS. Spectroscopic interpretation: The high vibrations of CDBrClF. J Chem Phys 2004; 120:4194-206. [PMID: 15268586 DOI: 10.1063/1.1644795] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
We extract the dynamics implicit in an algebraic fitted model Hamiltonian for the deuterium chromophore's vibrational motion in the molecule CDBrClF. The original model has four degrees of freedom, three positions and one representing interbond couplings. A conserved polyad allows in a semiclassical approach the reduction to three degrees of freedom. For most quantum states we can identify the underlying motion that when quantized gives the said state. Most of the classifications, identifications, and assignments are done by visual inspection of the already available wave function semiclassically transformed from the number representation to a representation on the reduced dimension toroidal configuration space corresponding to the classical action and angle variables. The concentration of the wave function density to lower dimensional subsets centered on idealized simple lower dimensional organizing structures and the behavior of the phase along such organizing centers already reveals the atomic motion. Extremely little computational work is needed.
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Affiliation(s)
- C Jung
- Centro de Ciencias Fisicas, UNAM, Av. Universidad, 62251 Cuernavaca, Mexico
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Azzam T, Schinke R, Farantos SC, Joyeux M, Peterson KA. The bound state spectrum of HOBr up to the dissociation limit: Evolution of saddle-node bifurcations. J Chem Phys 2003. [DOI: 10.1063/1.1569914] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
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20
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Joyeux M, Farantos SC, Schinke R. Highly Excited Motion in Molecules: Saddle-Node Bifurcations and Their Fingerprints in Vibrational Spectra. J Phys Chem A 2002. [DOI: 10.1021/jp0131065] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- M. Joyeux
- Laboratoire de Spectrométrie Physique, Université Joseph Fourier-Grenoble I, BP 87, F-38402 St Martin d'Heres Cedex, France
| | - S. C. Farantos
- Institute of Electronic Struture and Laser Foundation for Research and Technology−Hellas, Greece, and Department of Chemistry, University of Crete, Iraklion 711 10, Crete, Greece
| | - R. Schinke
- Max-Planck-Institut für Strömungsforschung, D-37073 Göttingen, Germany
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Jung C, Taylor HS, Atılgan E. Extraction of the Vibrational Dynamics from Spectra of Highly Excited Polyatomics: DCO. J Phys Chem A 2002. [DOI: 10.1021/jp014008m] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Christof Jung
- Centro de Ciencias Fisicas UNAM, Apartado Postal 48-3, 62251 Cuernavaca, Mexico
| | - Howard S. Taylor
- Department of Chemistry, University of Southern California, Los Angeles, California 90089
| | - Erdinç Atılgan
- Department of Chemistry, University of Southern California, Los Angeles, California 90089
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22
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Waalkens H, Jung C, Taylor HS. Semiclassical Assignment of the Vibrational Spectrum of N2O. J Phys Chem A 2002. [DOI: 10.1021/jp013057w] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Holger Waalkens
- Institut für Theoretische Physik and Institut für Dynamische Systeme, Universität Bremen, Postfach 330 440, 28334 Bremen, Germany
| | - Christof Jung
- Centro de Ciencias Fisicas UNAM, Apdo. postal 48-3, 62551 Cuernavaca, Mexico
| | - Howard S. Taylor
- Department of Chemistry, University of Southern California, Los Angeles, California 90089
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