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Telfah A, Charifi Z, Latelli N, Qattan IA, Baaziz H, Al-Bataineh QM, Alsaad AM, Sabirianov RF. Formation of hydrogen bonding network of methane sulfonic acid at low degree of hydration (MSA) m·(H 2O) n (m = 1-2 and n = 1-5). Sci Rep 2024; 14:11252. [PMID: 38755227 PMCID: PMC11099154 DOI: 10.1038/s41598-024-61364-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 05/06/2024] [Indexed: 05/18/2024] Open
Abstract
This study employs ab initio calculations based on density functional theory (DFT) to investigate the structural properties, 1H-NMR spectra, and vibrational spectra of methane sulfonic acid (MSA) at low degree of hydration. The findings reveal that energetically stable structures are formed by small clusters consisting of one or two MSA molecules (m = 1 and 2) and one or two water molecules in (MSA)m·(H2O)n (m = 1-2 and n = 1-5).These stable structures arise from the formation of strong cyclic hydrogen bonds between the proton of the hydroxyl (OH) group in MSA and the water molecules. However, clusters containing three or more water molecules (n > 2) exhibit proton transfer from MSA to water, resulting in the formation of ion-pairs composed of CH3SO3- and H3O+species. The measured 1H-NMR spectra demonstrate the presence of hydrogen-bonded interactions between MSA and water, with a single MSA molecule interacting with water molecules. This interaction model accurately represents the hydrogen bonding network, as supported by the agreement between the experimental and calculated NMR chemical shift results.
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Affiliation(s)
- Ahmad Telfah
- Nanotechnology Center, The University of Jordan, Amman, 11942, Jordan.
- Fachhochschule Dortmund University of Applied Sciences and Arts, Dortmund, Germany.
- Department of Physics, University of Nebraska at Omaha, Omaha, NE, 68182, USA.
| | - Z Charifi
- Department of Physics, Faculty of Science, University of M'sila, 28000, M'sila, Algeria
- Laboratory of Physics and Chemistry of Materials, University of M'sila, M'sila, Algeria
| | - N Latelli
- Department of Chemistry, Faculty of Science, University of M'sila, 28000, M'sila, Algeria
- Laboratoire Chimie des Matériaux et des Vivants: Activité, Réactivité, Université Batna1, 05001, Batna, Algerie
| | - Issam A Qattan
- Department of Physics, Khalifa University of Science and Technology, P.O. Box 127788, 127788, Abu Dhabi, United Arab Emirates.
| | - H Baaziz
- Department of Physics, Faculty of Science, University of M'sila, 28000, M'sila, Algeria
- Laboratory of Physics and Chemistry of Materials, University of M'sila, M'sila, Algeria
| | - Qais M Al-Bataineh
- Leibniz Institut für Analytische Wissenschaften-ISAS-e.V., 44139, Dortmund, Germany
- Experimental Physics, TU Dortmund University, 44227, Dortmund, Germany
| | - A M Alsaad
- Department of Physical Sciences, Jordan University of Science and Technology, Irbid, 22110, Jordan
| | - R F Sabirianov
- Department of Physics, University of Nebraska at Omaha, Omaha, NE, 68182, USA
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Abstract
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We
report a computational study of the little-studied neutral bisulfite,
bisulfate, dihydro-phosphite, and dihydro-phosphate radicals (HSOx•, H2POx•, x =
3,4), calling special attention to their various tautomeric structures
together with pKa values estimated from
the Gibbs free energies of their dissociations (at the G4 and CAM-B3LYP
levels of density functional theory). The energetics of microhydration
clusters with up to four water molecules for the S-based species and
up to eight water molecules for the P-based species were investigated.
The number of microhydrating water molecules needed to induce spontaneous
de-protonation is found to correlate the acid strength of each radical.
According to the computed Gibbs free reaction and activation energies,
S- and P-centered radicals preferentially add to the double bond of
propene (a lipid model), whereas the O-centered radical tautomers
prefer H-abstraction. The likely downstream reactions of these radicals
in biological media are discussed.
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Affiliation(s)
- Michael Bühl
- EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, U.K
| | - Tallulah Hutson
- EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, U.K
| | - Alice Missio
- EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, U.K
| | - John C Walton
- EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, U.K
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Walton JC. Dissociations of free radicals to generate protons, electrophiles or nucleophiles: role in DNA strand breaks. Chem Soc Rev 2021; 50:7496-7512. [PMID: 34019058 DOI: 10.1039/d1cs00193k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The concept behind the research described in this article was that of marrying the 'soft' methods of radical generation with the effectiveness and flexibility of nucleophile/electrophile synthetic procedures. Classic studies with pulse radiolysis and laser flash photolysis had shown that free radicals could be more acidic than their closed shell counterparts. QM computations harmonised with this and helped to define which radical centres and which structural types were most effective. Radicals based on the sulfonic acid moiety and on the Meldrum's acid moiety (2,2-dimethyl-1,3-dioxane-4,6-dione) were found to be extreme examples in the superacid class. The ethyne unit could be used as a very effective spacer between the radical centre and the site of proton donation. The key factor in promoting acidity was understood to be the thermodynamic stabilisation of the conjugate anion-radicals released on deprotonation. Solvation played a key part in promoting this and theoretical microhydration studies provided notable support. A corollary was that heterolytic dissociations of free radicals to yield either electrophiles or nucleophiles were also enhanced relative to non-radical models. The most effective radical types for spontaneous releases of both these types of reagents were identified. Ethyne units were again effective as spacers. The enhancement of release of phosphate anions by adjacent radical centres was an important special case. Reactive oxygen species and also diradicals from endiyne antibiotics generate C4'-deoxyribose radicals from nucleotides. Radicals of these types spontaneously release phosphate and triphosphate and this is a contributor to DNA and RNA strand breaks.
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Affiliation(s)
- John C Walton
- EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, UK.
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Microhydration and the Enhanced Acidity of Free Radicals. Molecules 2018; 23:molecules23020423. [PMID: 29443952 PMCID: PMC6017598 DOI: 10.3390/molecules23020423] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Revised: 02/09/2018] [Accepted: 02/14/2018] [Indexed: 12/02/2022] Open
Abstract
Recent theoretical research employing a continuum solvent model predicted that radical centers would enhance the acidity (RED-shift) of certain proton-donor molecules. Microhydration studies employing a DFT method are reported here with the aim of establishing the effect of the solvent micro-structure on the acidity of radicals with and without RED-shifts. Microhydration cluster structures were obtained for carboxyl, carboxy-ethynyl, carboxy-methyl, and hydroperoxyl radicals. The numbers of water molecules needed to induce spontaneous ionization were determined. The hydration clusters formed primarily round the CO2 units of the carboxylate-containing radicals. Only 4 or 5 water molecules were needed to induce ionization of carboxyl and carboxy-ethynyl radicals, thus corroborating their large RED-shifts.
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Affiliation(s)
- Parvathi Krishnakumar
- Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400094, India
| | - Dilip Kumar Maity
- Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400094, India
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Bühl M, DaBell P, Manley DW, McCaughan RP, Walton JC. Bicarbonate and Alkyl Carbonate Radicals: Structural Integrity and Reactions with Lipid Components. J Am Chem Soc 2015; 137:16153-62. [DOI: 10.1021/jacs.5b10693] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael Bühl
- University of St. Andrews, EaStCHEM School of Chemistry, St.
Andrews, Fife KY16 9ST, United Kingdom
| | - Peter DaBell
- University of St. Andrews, EaStCHEM School of Chemistry, St.
Andrews, Fife KY16 9ST, United Kingdom
| | - David W. Manley
- University of St. Andrews, EaStCHEM School of Chemistry, St.
Andrews, Fife KY16 9ST, United Kingdom
| | - Rory P. McCaughan
- University of St. Andrews, EaStCHEM School of Chemistry, St.
Andrews, Fife KY16 9ST, United Kingdom
| | - John C. Walton
- University of St. Andrews, EaStCHEM School of Chemistry, St.
Andrews, Fife KY16 9ST, United Kingdom
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Kim SK, Lee HM, Kim KS. Disulfuric acid dissociated by two water molecules: ab initio and density functional theory calculations. Phys Chem Chem Phys 2015; 17:28556-64. [PMID: 26400266 DOI: 10.1039/c5cp05201g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have studied geometries, energies and vibrational spectra of disulfuric acid (H2S2O7) and its anion (HS2O7(-)) hydrated by a few water molecules, using density functional theory (M062X) and ab initio theory (SCS-MP2 and CCSD(T)). The most noteworthy result is found in H2S2O7(H2O)2 in which the lowest energy conformer shows deprotonated H2S2O7. Thus, H2S2O7 requires only two water molecules, the fewest number of water molecules for deprotonation among various hydrated monomeric acids reported so far. Even the second deprotonation of the first deprotonated species HS2O7(-) needs only four water molecules. The deprotonation is supported by vibration spectra, in which acid O-H stretching peaks disappear and specific three O-H stretching peaks for H3O(+) (eigen structure) appear. We have also kept track of variations in several geometrical parameters, atomic charges, and hybrid orbital characters upon addition of water. As the number of water molecules added increases, the S-O bond weakens in the case of H2S2O7, but strengthens in the case of HS2O7(-). It implies that the decomposition leading to H2SO4 and SO3 hardly occurs prior to the 2nd deprotonation at low temperatures.
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Affiliation(s)
- Seong Kyu Kim
- Department of Chemistry, Sungkyunkwan University, Suwon 440-746, Korea.
| | - Han Myoung Lee
- Center for Superfunctional Materials, Department of Chemistry, Ulsan Institute of Science and Technology (UNIST), Ulsan 689-798, Korea.
| | - Kwang S Kim
- Center for Superfunctional Materials, Department of Chemistry, Ulsan Institute of Science and Technology (UNIST), Ulsan 689-798, Korea.
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Krishnakumar P, Maity DK. Effect of Microhydration on Dissociation of Trifluoroacetic Acid. J Phys Chem A 2014; 118:5443-53. [DOI: 10.1021/jp502976e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Parvathi Krishnakumar
- Homi
Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400094, India
| | - Dilip Kumar Maity
- Homi
Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400094, India
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Elena AM, Meloni S, Ciccotti G. Equilibrium and Rate Constants, and Reaction Mechanism of the HF Dissociation in the HF(H2O)7 Cluster by ab Initio Rare Event Simulations. J Phys Chem A 2013; 117:13039-50. [DOI: 10.1021/jp406982h] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alin Marin Elena
- School
of Physics, Room 302 UCD-EMSC, University College Dublin, Belfield, Dublin 4, Dublin, Ireland
| | - Simone Meloni
- School
of Physics, Room 302 UCD-EMSC, University College Dublin, Belfield, Dublin 4, Dublin, Ireland
- CINECA, Via dei Tizii 6, 00185 Roma, Italy
| | - Giovanni Ciccotti
- School
of Physics, Room 302 UCD-EMSC, University College Dublin, Belfield, Dublin 4, Dublin, Ireland
- Dipartimento
di Fisica and CNISM, Università La Sapienza, P. le A. Moro
5, 00185 Rome, Italy
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10
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Affiliation(s)
- Dilip K. Maity
- Theoretical
Chemistry Section, Chemistry Group, Bhabha Atomic Research Centre, Mumbai 400085, India
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WEBER KEVINH, HARRIS JULIEA, LARSON LAURAJ, TAO FUMING, LI SHUJIN, GU RENAO. MECHANISTIC STUDY OF THE REACTIONS OF SULFUR TRIOXIDE WITH HYDROGEN HALIDES TO FORM SUPERACID AND SURVEY OF HALO-SULFONIC ACID STRENGTH. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s0219633605001696] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The reaction mechanisms for the formations of halo-sulfonic acids from sulfur trioxide and hydrogen halides are investigated using density functional theory. Two channels of reaction are considered: the binary SO 3 + HX reaction pathway and the ternary SO 3 + 2 HX pathway. Equilibrium geometries, harmonic frequencies, and relative energies of the reactant, transition state, and product clusters are calculated at the B3LYP/6-311++G** level. Hydrogen fluoride was found to have a particularly strong interaction with SO 3, forming an electron donor acceptor complex. Similarities to the hydrolysis of SO 3 to form sulfuric acid are discussed and the relative acidities of the halo-sulfonic acid series are evaluated and compared in the same context to sulfuric and perchloric acids.
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Affiliation(s)
- KEVIN H. WEBER
- Department of Chemistry and Biochemistry, California State University, Fullerton, CA 92834, USA
| | - JULIE A. HARRIS
- Department of Chemistry and Biochemistry, California State University, Fullerton, CA 92834, USA
| | - LAURA J. LARSON
- Department of Chemistry and Biochemistry, California State University, Fullerton, CA 92834, USA
| | - FU-MING TAO
- Department of Chemistry and Biochemistry, California State University, Fullerton, CA 92834, USA
| | - SHUJIN LI
- Department of Chemistry, Suzhou University, Suzhou, Jiangsu, China
| | - RENAO GU
- Department of Chemistry, Suzhou University, Suzhou, Jiangsu, China
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Demianenko E, Ilchenko M, Grebenyuk A, Lobanov V. A theoretical study on orthosilicic acid dissociation in water clusters. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.09.038] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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13
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Pye CC, Walker VEJ. Ab Initio Investigation of the Hydration of the Tetrahedral Perchlorate, Perbromate, Selenate, Arsenate, and Vanadate Anions. J Phys Chem A 2011; 115:13007-15. [DOI: 10.1021/jp204783g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Cory C. Pye
- Department of Chemistry, Saint Mary’s University, Halifax, Nova Scotia, Canada B3H 3C3
| | - Victoria E. J. Walker
- Department of Chemistry, Saint Mary’s University, Halifax, Nova Scotia, Canada B3H 3C3
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Affiliation(s)
- Kenneth R. Leopold
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455;
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15
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Sedo G, Doran JL, Leopold KR. Partial Proton Transfer in the Nitric Acid Trihydrate Complex. J Phys Chem A 2009; 113:11301-10. [DOI: 10.1021/jp9063033] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Galen Sedo
- Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455
| | - Jamie L. Doran
- Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455
| | - Kenneth R. Leopold
- Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455
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Ionic dissociations of chlorosulfonic acid in microsolvated clusters: A density functional theory and ab initio MO study. ACTA ACUST UNITED AC 2008. [DOI: 10.1007/s11426-007-0106-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Intermolecular structure and properties of the methanesulfonic acid–ammonia system in small water clusters. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2007.09.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Li S, Tao FM, Gu R. Theoretical study on the ionic dissociation of halosulfonic acids in small water clusters. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.04.117] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Theoretical study of proton transfer reactions of halosulfonic acids with ammonia in hydrated clusters. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2005.10.041] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Johnson JRT, Panas I. Hydrolysis, Solvation, and Reduction of SO3, S2O6, ClO3(OH), Cl2O7, and ArO4Relating Chemical Properties to the Instability of SO, ClO, and ArO Groups. J Phys Chem A 2001. [DOI: 10.1021/jp015502t] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. R. Tobias Johnson
- Inorganic Chemistry, Department of Chemistry, Göteborg University, S-412 96 Göteborg, Sweden
| | - Itai Panas
- Department of Inorganic Environmental Chemistry, Chalmers University of Technology, S-412 96 Göteborg, Sweden
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