First-Principles Theoretical Study of Molecular HCl Adsorption on a Hexagonal Ice (0001) Surface

Transition-Metal-Catalyzed Directed C-H Functionalization in/on Water

Directing group assisted C-H bond functionalization using transition-metal-catalysis has emerged as a reliable synthetic tool for the construction of regioselective carbon-carbon/heteroatom bonds. Off late, "in/on water directed transition-metal-catalysis", though still underdeveloped, has appeared as one of the prominent themes in sustainable organic chemistry. This article covers the advancements, mechanistic insights and application of the sustainable directed C-H bond functionalization of (hetero)arenes in/on water in the presence of transition-metal-catalysis.

"Pump-probe" atom-centered density matrix propagation studies to gauge anharmonicity and energy repartitioning in atmospheric reactive adducts: case study of the OH + isoprene and OH + butadiene reaction intermediates

Time-resolved "pump-probe" ab initio molecular dynamics studies are constructed to probe the stability of reaction intermediates, the mechanism of energy transfer, and energy repartitioning, for moieties involved during the interaction of volatile organic compunds with hydroxyl radical. These systems are of prime importance in the atmosphere. Specifically, the stability of reaction intermediates of hydroxyl radical adducts to isoprene and butadiene molecules is used as a case study to develop novel computational techniques involving "pump-probe" ab initio molecular dynamics. Starting with the various possible hydroxyl radical adducts to isoprene and butadiene, select vibrational modes of each of the adducts are populated with excess energy to mimic the initial conditions of an experiment. The flow of energy into the remaining modes is then probed by subjecting the excited adducts to ab initio molecular dynamics simulations. It is found that the stability of the adducts arises directly due to the anhormonically driven coupling of the modes to facilitate repartitioning of the excess vibrational energy. This kind of vibrational repartitioning has a critical influence on the energy density.

First-principles study of fluoroform adsorption on a hexagonal ice (0001) surface: weak hydrogen bonds-strong structural effects

For isolated fluoroform (F(3)CH) molecules adsorbed on a hexagonal ice (0001) surface the properties of blue- and red-shifting hydrogen bonds were studied using static density functional theory (DFT) calculations and Car-Parrinello molecular dynamics (CP-MD) simulations. A systematic search by starting from many initial configurations was performed to determine the lowest-energy structures of F(3)CH on the ice surface, and for the optimized geometries the vibrational frequencies were calculated. The local minima structures are analyzed in terms of their coordination to the surface, with special focus on identifying blue-shifting hydrogen bonds via their spectroscopic signature of an increased frequency of the C-H fundamental stretching vibration. Subsequently, by CP-MD simulations the stability of the lowest-energy configurations at finite temperatures was verified and possible transformation pathways connecting the local minima structures were explored.

New Insights into the Structure of the Vapor/Water Interface from Large-Scale First-Principles Simulations

We present extensive ab initio simulations of the molecular arrangements at the vapor/water interface, which provide valuable insights into the interface structure. In particular, the simulations address the controversy of whether there is a significant amount of nondonor configurations at this prototypical interface, using a novel Car-Parrinello-like ab initio molecular dynamics approach. The interface is modeled by a system of 384 water molecules for 125 ps in a two-dimensional periodic slab, the most extensive ab initio molecular dynamics simulation to date. In contrast to previous theoretical simulations and X-ray absorption spectroscopy, but consistent with sum-frequency generation experiments, we observe no evidence for a significant occurrence of acceptor-only species at the vapor/water interface. Besides a distinct surface relaxation effect, we find that only the topmost layers of the interface obey structural order.

Van der Waals interactions in density functional theory using Wannier functions

van der Waals interactions between atoms and molecules are ubiquitous and very important for many molecular and condensed-matter structures. These systems are often studied from first principles using the density functional theory (DFT), because this approach often represents a good compromise between accuracy and efficiency. However, the commonly used DFT functionals are not able to describe properly van der Waals effects. Most attempts to correct for this problem have a basic semiempirical character, although computationally more expensive first principles schemes have been recently developed. Of course, the key issue is finding a way to include van der Waals interactions in DFT without dramatically increasing the computational cost. We here describe in detail the recently developed scheme, based on the use of the maximally localized Wannier functions, that combines the simplicity of the semiempirical formalism with the accuracy of the first principles approaches and appears to be promising, being simple, efficient, accurate, and transferable (for instance, charge polarization effects are naturally included). The results of successful applications to small molecules, bulk Ar, and the interaction of Ar, He, and H(2) with two different Al surfaces are presented. Directions for further improvements of the method are finally suggested.

Interaction of Hydrogen Chloride with Ice Surfaces: The Effects of Grain Size, Surface Roughness, and Surface Disorder

Characterization of the interaction of hydrogen chloride (HCl) with polar stratospheric cloud (PSC) ice particles is essential to understanding the processes responsible for ozone depletion. The interaction of HCl with ice was studied using a coated-wall flow tube with chemical ionization mass spectrometry (CIMS) between 5x10(-8) and 10(-4) Torr HCl and between 186 and 223 K, including conditions recently shown to induce quasi-liquid layer (QLL) formation on single crystalline ice samples. Measurements were performed on smooth and rough (vapor-deposited) polycrystalline ice films. A numerical model of the coated-wall flow reactor was used to interpret these results and results of studies on zone-refined ice cylinders with grain sizes on the order of several millimeters (reported elsewhere). We found that HCl adsorption on polycrystalline ice films typically used in laboratory studies under conditions not known to induce surface disordering consists of two modes: one relatively strong mode leading to irreversible adsorption, and one relatively weak binding mode leading to reversible adsorption. We have indirect experimental evidence that these two modes of adsorption correspond to adsorption to sites at crystal faces and those at grain boundaries, but there is not enough information to enable us to conclusively assign each adsorption mode to a type of site. Unlike what was observed in the zone-refined ice study, there was no strong qualitative contrast found between the HCl uptake curves under QLL versus non-QLL conditions for adsorption on smooth and vapor-deposited ices. We also found indirect evidence that HCl hexahydrate formation on ice between 3x10(-7) and 2x10(-6) Torr HCl and between 186 and 190 K is a process involving hydrate nucleation and propagation on the crystal surface, rather than one originating in grain boundaries, as has been suggested for ice formed at lower temperatures. These results underscore the dependence of the HCl-ice interaction on the characteristics of the ice substrate.

On the Theory of Organic Catalysis “on Water”

A molecular origin of the striking rate increase observed in a reaction on water is studied theoretically. A key aspect of the on-water rate phenomenon is the chemistry between water and reactants that occurs at an oil-water phase boundary. In particular, the structure of water at the oil-water interface of an oil emulsion, in which approximately one in every four interfacial water molecules has a free ("dangling") OH group that protrudes into the organic phase, plays a key role in catalyzing reactions via the formation of hydrogen bonds. Catalysis is expected when these OH's form stronger hydrogen bonds with the transition state than with the reactants. In experiments more than a 5 orders of magnitude enhancement in rate constant was found in a chosen reaction. The structural arrangement at the "oil-water" interface is in contrast to the structure of water molecules around a small hydrophobic solute in homogeneous solution, where the water molecules are tangentially oriented. The latter implies that a breaking of an existing hydrogen-bond network in homogeneous solution is needed in order to permit a catalytic effect of hydrogen bonds, but not for the on-water reaction. Thereby, the reaction in homogeneous aqueous solution is intrinsically slower than the surface reaction, as observed experimentally. The proposed mechanism of rate acceleration is discussed in light of other on-water reactions that showed smaller accelerations in rates. To interpret the results in different media, a method is given for comparing the rate constants of different rate processes, homogeneous, neat and on-water, all of which have different units, by introducing models that reduce them to the same units. The observed deuterium kinetic isotope effect is discussed briefly, and some experiments are suggested that can test the present interpretation and increase our understanding of the on-water catalysis.

Adsorption of HCl on the Water Ice Surface Studied by X-ray Absorption Spectroscopy

The adsorption state of HCl at 20 and 90 K on crystalline water ice films deposited under ultrahigh vacuum at 150 K has been studied by X-ray absorption spectroscopy at the O1s K-edge and Cl2p L-edge. We show that HCl dissociates at temperatures as low as 20 K, in agreement with the prediction of a spontaneous ionization of HCl on ice. Comparison between the rate of saturation of the "dangling" hydrogen bonds and the chlorine uptake indicates that hydrogen bonding of HCl with the surface native water "dangling" groups only accounts for a small part of the ionization events (20% at 90 K). A further mechanism drives the rest of the dissociation/solvation process. We suggest that the weakening of the ice surface hydrogen-bond network after the initial HCl adsorption phase facilitates the generation of new dissociation/solvation sites, which increases the uptake capacity of ice. These results also emphasize the necessity to take into account not only a single dissociation event but its catalyzing effect on the subsequent events when modeling the uptake of hydrogen-bonding molecules on the ice surface.